Online veröffentlicht: 31 Mar 2022 Seitenbereich: 7 - 12
Zusammenfassung
Abstract
New strategies in the development of anthrax vaccines and therapeutics have been presented. Recently, considerable progress has been made in the finding of new drugs and suitable therapy for anthrax. Very promising research considers the use of antimicrobials against selected bacteria species, including antibiotic-resistant strains. However, alternative therapeutic options should also be considered, among them vaccines. Bacillus anthracis spores are still the most dangerous weapon amongst pathogens which can be used in a bioterror attack. In this case, research for new anti-anthrax preparations is of primary importance for the protection of humans and animals. The overview of the most recent data shows the many new and promising possibilities for effective strategies in the development of vaccines and anti-anthrax preparations. The most effective of them should be available in the National Stockpile in the event of a biological crisis.
Online veröffentlicht: 31 Mar 2022 Seitenbereich: 13 - 20
Zusammenfassung
Abstract
Anaerobic bacteraemia is not frequent (1.2–13.7%), but is associated with a high mortality rate of 16–27%. Anaerobic infections including bacteraemia nearly always arise from contamination by endogenous bacteria into contiguous or other sites like gastrointestinal tracts, genito-urinary tracts, abscesses etc. Factors leading to anaerobic bacteraemia are mainly surgical procedures, crush injuries, the presence of foreign bodies, tissue necrosis, tumours, diabetes. The most common infectious anaerobic agents are Gram-negative bacilli belonging to the Bacteroides/Parabacteroides, which under normal conditions constitute the natural human microflora. An important factor in the virulency of B. fragilis is the ability to form abscesses; a limited infection may progress to bacteraemia and then systemic inflammatory response syndrome and sepsis. Anaerobic bacteraemia mainly affects adults, with elderly patients over 65 years with underlying diseases. The importance of anaerobic bacteria in neonatal bacteraemia and sepsis is a relatively new phenomenon. In contrast the prevalence of anaerobes in bloodstream infections in children is extremely rare with children between 2 and 6 years of age having the least risk ranging 0–0.5% overall. The incidence of recovery of anaerobes in neonatal bacteraemia varies between 1.8% and 12.5%. The majority of cases reported in the literature were due to Bacteroides spp. (41%) other cultured anaerobes belonged to Clostridium spp. (32%), Peptostreptococcus spp. (20%).
Blood cultures remain the gold standard for detection of the etiologic both anaerobes and aerobes agent of bloodstream infection. In recent years significant progress has been made in the methods used in the diagnosis of anaerobes, which significantly reduced the time and cost of the examination. Currently, the mass spectometry MALDI-TOF MS and 16S rRNA sequencing are increasingly used for anaerobic bacteria identification. In 2022, EUCAST published standardized disk diffusion method for the drug susceptibility testing of Bacteroides spp. and other 4 clinically significant anaerobes. Determining the sensitivity of anaerobes to antibiotics is important due to the increasing drug resistance in this group. Number of B. fragilis strains resistant to clindamycin and moxifloxacin is increasing. According to the published studies sensitivity to clindamycin and moxifloxacin is significantly rare and occurs in 64% and 68% of isolates and in 50.8% and 58.2% respectively. Carbapenems and metronidazole continue to be the most effective active antibiotics to be used in the empirical therapy of anaerobic bacteraemia. There are case reports of infections caused by multidrug-resistant strains of Bacteroides spp, meaning resistant to at least three antibiotics from different groups. Rapid microbial diagnosis, targeted therapy and surgical treatment of a possible source of infection are crucial in treatment of sepsis caused by anaerobic bacteria.
Online veröffentlicht: 31 Mar 2022 Seitenbereich: 21 - 29
Zusammenfassung
Abstract
The microbiota plays an important role in human health. Disturbance in microbiota composition can be compensated by administration of probiotic microorganisms. However, their application is associated with some constraints. Probiotics are commonly used in disease prevention, whereas they play only a supportive role in disease therapy. Moreover, probiotics during technological processes and gastrointestinal tract passage may lose their beneficial properties. These constraints can be overcome by genetic modification of bacteria. The current research shows that genetically modified bacteria can have new biological properties and can be used in diagnostics and therapy.
Online veröffentlicht: 31 Mar 2022 Seitenbereich: 31 - 38
Zusammenfassung
Abstract
Liquid biopsy involves testing extracellular DNA (cfDNA – circulating, cell-free DNA) circulating in the blood and deriving from normal or cancer cells. Analysis of a small amount of blood can be a rich source of information about the health status of cancer patient. Liquid biopsy may be an alternative to tumor biopsy, but it presents particular value in cases of inaccessibility of tissue samples and the possibility of repeating it many times. The tumor-derived cfDNA fraction is called circulating tumor DNA (ctDNA) in oncology. An example of ctDNA may be the genome sequences of the Human Papillomavirus (HPV), which is the etiological factor of some head and neck cancers (HNC), in particular of the oropharyngeal cancer (OPC). HPV16 is the most common genotype found in OPC. Noninvasive and frequent determination of HPV16 DNA (ctHPV16) in the blood gives the opportunity to monitor the course of the disease during and after treatment. Very good tools for HPV DNA detection are techniques based on polymerase chain reaction (PCR) like quantitative real-time PCR (qPCR) and digital droplet PCR (ddPCR). The use of these techniques for virus DNA detection in the blood gives high specificity and sensitivity of the analysis. Determination of ctHPV16 after treatment may be helpful in diagnosis of residual disease, which is difficult to assess in radiological imaging. The ctHPV16 biomarker can be successfully used to diagnose the effects of treatment of patients with OPC, which in the future may be helpful in making therapeutic decisions.
Online veröffentlicht: 31 Mar 2022 Seitenbereich: 39 - 48
Zusammenfassung
Abstract
Coliphages are bacterial viruses that have been tested for many years to dermine their usefulness as indicators of faecal contamination and presence of human viral pathogens in water. Retrospective analyzes of water-borne outbreaks have shown that E. coli tests are not enough to assure the safety of water intended for human consumption. Coliphages are more resistant to disinfection in comparison with bacterial indicators and are able to survive at considerable distance from source of contamination. Using of coliphages as indicators, to ensure better control and safety of drinking water had been recommended by WHO experts and introduced in Directive (EU) 2020/2184. Somatic coliphages are new indicators of water microbiological quality assessment, including indication of intestinal viruses. They can be used to verify processes of water treatment and to assess efficiency of removing intestinal viruses.
New strategies in the development of anthrax vaccines and therapeutics have been presented. Recently, considerable progress has been made in the finding of new drugs and suitable therapy for anthrax. Very promising research considers the use of antimicrobials against selected bacteria species, including antibiotic-resistant strains. However, alternative therapeutic options should also be considered, among them vaccines. Bacillus anthracis spores are still the most dangerous weapon amongst pathogens which can be used in a bioterror attack. In this case, research for new anti-anthrax preparations is of primary importance for the protection of humans and animals. The overview of the most recent data shows the many new and promising possibilities for effective strategies in the development of vaccines and anti-anthrax preparations. The most effective of them should be available in the National Stockpile in the event of a biological crisis.
Anaerobic bacteraemia is not frequent (1.2–13.7%), but is associated with a high mortality rate of 16–27%. Anaerobic infections including bacteraemia nearly always arise from contamination by endogenous bacteria into contiguous or other sites like gastrointestinal tracts, genito-urinary tracts, abscesses etc. Factors leading to anaerobic bacteraemia are mainly surgical procedures, crush injuries, the presence of foreign bodies, tissue necrosis, tumours, diabetes. The most common infectious anaerobic agents are Gram-negative bacilli belonging to the Bacteroides/Parabacteroides, which under normal conditions constitute the natural human microflora. An important factor in the virulency of B. fragilis is the ability to form abscesses; a limited infection may progress to bacteraemia and then systemic inflammatory response syndrome and sepsis. Anaerobic bacteraemia mainly affects adults, with elderly patients over 65 years with underlying diseases. The importance of anaerobic bacteria in neonatal bacteraemia and sepsis is a relatively new phenomenon. In contrast the prevalence of anaerobes in bloodstream infections in children is extremely rare with children between 2 and 6 years of age having the least risk ranging 0–0.5% overall. The incidence of recovery of anaerobes in neonatal bacteraemia varies between 1.8% and 12.5%. The majority of cases reported in the literature were due to Bacteroides spp. (41%) other cultured anaerobes belonged to Clostridium spp. (32%), Peptostreptococcus spp. (20%).
Blood cultures remain the gold standard for detection of the etiologic both anaerobes and aerobes agent of bloodstream infection. In recent years significant progress has been made in the methods used in the diagnosis of anaerobes, which significantly reduced the time and cost of the examination. Currently, the mass spectometry MALDI-TOF MS and 16S rRNA sequencing are increasingly used for anaerobic bacteria identification. In 2022, EUCAST published standardized disk diffusion method for the drug susceptibility testing of Bacteroides spp. and other 4 clinically significant anaerobes. Determining the sensitivity of anaerobes to antibiotics is important due to the increasing drug resistance in this group. Number of B. fragilis strains resistant to clindamycin and moxifloxacin is increasing. According to the published studies sensitivity to clindamycin and moxifloxacin is significantly rare and occurs in 64% and 68% of isolates and in 50.8% and 58.2% respectively. Carbapenems and metronidazole continue to be the most effective active antibiotics to be used in the empirical therapy of anaerobic bacteraemia. There are case reports of infections caused by multidrug-resistant strains of Bacteroides spp, meaning resistant to at least three antibiotics from different groups. Rapid microbial diagnosis, targeted therapy and surgical treatment of a possible source of infection are crucial in treatment of sepsis caused by anaerobic bacteria.
The microbiota plays an important role in human health. Disturbance in microbiota composition can be compensated by administration of probiotic microorganisms. However, their application is associated with some constraints. Probiotics are commonly used in disease prevention, whereas they play only a supportive role in disease therapy. Moreover, probiotics during technological processes and gastrointestinal tract passage may lose their beneficial properties. These constraints can be overcome by genetic modification of bacteria. The current research shows that genetically modified bacteria can have new biological properties and can be used in diagnostics and therapy.
Liquid biopsy involves testing extracellular DNA (cfDNA – circulating, cell-free DNA) circulating in the blood and deriving from normal or cancer cells. Analysis of a small amount of blood can be a rich source of information about the health status of cancer patient. Liquid biopsy may be an alternative to tumor biopsy, but it presents particular value in cases of inaccessibility of tissue samples and the possibility of repeating it many times. The tumor-derived cfDNA fraction is called circulating tumor DNA (ctDNA) in oncology. An example of ctDNA may be the genome sequences of the Human Papillomavirus (HPV), which is the etiological factor of some head and neck cancers (HNC), in particular of the oropharyngeal cancer (OPC). HPV16 is the most common genotype found in OPC. Noninvasive and frequent determination of HPV16 DNA (ctHPV16) in the blood gives the opportunity to monitor the course of the disease during and after treatment. Very good tools for HPV DNA detection are techniques based on polymerase chain reaction (PCR) like quantitative real-time PCR (qPCR) and digital droplet PCR (ddPCR). The use of these techniques for virus DNA detection in the blood gives high specificity and sensitivity of the analysis. Determination of ctHPV16 after treatment may be helpful in diagnosis of residual disease, which is difficult to assess in radiological imaging. The ctHPV16 biomarker can be successfully used to diagnose the effects of treatment of patients with OPC, which in the future may be helpful in making therapeutic decisions.
Coliphages are bacterial viruses that have been tested for many years to dermine their usefulness as indicators of faecal contamination and presence of human viral pathogens in water. Retrospective analyzes of water-borne outbreaks have shown that E. coli tests are not enough to assure the safety of water intended for human consumption. Coliphages are more resistant to disinfection in comparison with bacterial indicators and are able to survive at considerable distance from source of contamination. Using of coliphages as indicators, to ensure better control and safety of drinking water had been recommended by WHO experts and introduced in Directive (EU) 2020/2184. Somatic coliphages are new indicators of water microbiological quality assessment, including indication of intestinal viruses. They can be used to verify processes of water treatment and to assess efficiency of removing intestinal viruses.