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Characterisation of ORF3, M, N and E gene sequences of porcine epidemic diarrhoea virus from domestic pigs in Poland

Monika Olech

Monika Olech

  • Department of Pathology, National Veterinary Research InstitutePuławy, Poland
  • Department of Swine Diseases, National Veterinary Research InstitutePuławy, Poland
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Olech, Monika
, 
Marta Antas

Marta Antas

Department of Swine Diseases, National Veterinary Research InstitutePuławy, Poland
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Antas, Marta
 and 
Anna Szczotka-Bochniarz

Anna Szczotka-Bochniarz

Department of Swine Diseases, National Veterinary Research InstitutePuławy, Poland
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Szczotka-Bochniarz, Anna
  
Sep 30, 2022
Characterisation of ORF3, M, N and E gene sequences of porcine epidemic diarrhoea virus from domestic pigs in Poland's Cover Image
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Published Online: Sep 30, 2022
Page range: 317 - 324
Received: Apr 24, 2022
Accepted: Sep 12, 2022
DOI: https://doi.org/10.2478/jvetres-2022-0051
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© 2022 M. Olech et al. published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Fig. 1

Phylogenetic relationship between the sequences of PEDV Polish strains and sequences of reference strains obtained from GenBank. The phylogenetic trees were constructed on the basis of the ORF3 (a) and E (b) nucleotide sequences with MEGA6 software using the neighbour-joining method. Bootstrap values >70 are shown. The numbers of each branch represent the bootstrap value calculated using 1,000 replicates. The scale bars indicate nucleotide substitutions per site. PEDV isolates identified in this study are indicated with solid black circles
Phylogenetic relationship between the sequences of PEDV Polish strains and sequences of reference strains obtained from GenBank. The phylogenetic trees were constructed on the basis of the ORF3 (a) and E (b) nucleotide sequences with MEGA6 software using the neighbour-joining method. Bootstrap values >70 are shown. The numbers of each branch represent the bootstrap value calculated using 1,000 replicates. The scale bars indicate nucleotide substitutions per site. PEDV isolates identified in this study are indicated with solid black circles

Fig. 2

Phylogenetic relationship between the sequences of PEDV Polish strains and sequences of reference strains obtained from GenBank. The phylogenetic trees were constructed on the basis of the M (a) and N (b) nucleotide sequences with the MEGA6 software using the neighbour-joining method. Bootstrap values >70 are shown. The numbers of each branch represent the bootstrap value calculated using 1,000 replicates. The scale bars indicate nucleotide substitutions per site. PEDV isolates identified in this study are indicated with solid black circles
Phylogenetic relationship between the sequences of PEDV Polish strains and sequences of reference strains obtained from GenBank. The phylogenetic trees were constructed on the basis of the M (a) and N (b) nucleotide sequences with the MEGA6 software using the neighbour-joining method. Bootstrap values >70 are shown. The numbers of each branch represent the bootstrap value calculated using 1,000 replicates. The scale bars indicate nucleotide substitutions per site. PEDV isolates identified in this study are indicated with solid black circles
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English
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Journal Subjects:
Life Sciences, Molecular Biology, Microbiology and Virology, Life Sciences, other, Medicine, Veterinary Medicine
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