<abstract xmlns="http://www.w3.org/1999/xhtml">Three of the most frequently used sigmoidal growth curves from the Richards family are the logistic model, Gompertz model and Richards model. They are used in the analysis of organismal growth over time in many disciplines/studies and were proposed in many parameterisations. Choosing the right parameterisation is not easy. The correct parameterisation of the model should take into account such parameters that are useful to describe the analysed growth phenomenon and are biologically relevant without additional calculations. In addition, each parameter of the model only affects one shape characteristic of each growth curve, which makes it possible to determine standard errors and confidence intervals using statistical software.Growth curves in germination dynamics studies should provide information on topics such as the length of the lag in onset of germination, the maximum germination rate and, when it occurs, the time at which 50% of seeds will germinate and the final germination proportion. In this article, we present three parameterisations of the logistic, Gompertz and Richards models and indicate two parameterisations for each model, corresponding to the above-mentioned issues. Our proposition is parameterisation by taking into account the maximum absolute growth rate. Parameterisations indicated as useful for germination dynamics are characterised by the fact that each parameter has the same meaning in every model, so its estimates can be compared directly amongst the models. We also discussed the goodness-of-fit measures for nonlinear models and in particular measures of nonlinear behaviour of a model’s individual parameters as well as overall measures of nonlinearity.All described models were used to study the dynamics of the epicotyl emergence of pedunculate oak. After checking the close-to-linear behaviour of the studied model parameters and by taking into account the criteria of model selection (AICc of each growth curve and the residual variance [RV]), the best model describing the dynamics of epicotyl appearance of pedunculate oak was the Richards curve.</abstract>

Three of the most frequently used sigmoidal growth curves from the Richards family are the logistic model, Gompertz model and Richards model. They are used in the analysis of organismal growth over time in many disciplines/studies and were proposed in many parameterisations. Choosing the right parameterisation is not easy. The correct parameterisation of the model should take into account such parameters that are useful to describe the analysed growth phenomenon and are biologically relevant without additional calculations. In addition, each parameter of the model only affects one shape characteristic of each growth curve, which makes it possible to determine standard errors and confidence intervals using statistical software.Growth curves in germination dynamics studies should provide information on topics such as the length of the lag in onset of germination, the maximum germination rate and, when it occurs, the time at which 50% of seeds will germinate and the final germination proportion. In this article, we present three parameterisations of the logistic, Gompertz and Richards models and indicate two parameterisations for each model, corresponding to the above-mentioned issues. Our proposition is parameterisation by taking into account the maximum absolute growth rate. Parameterisations indicated as useful for germination dynamics are characterised by the fact that each parameter has the same meaning in every model, so its estimates can be compared directly amongst the models. We also discussed the goodness-of-fit measures for nonlinear models and in particular measures of nonlinear behaviour of a model’s individual parameters as well as overall measures of nonlinearity.All described models were used to study the dynamics of the epicotyl emergence of pedunculate oak. After checking the close-to-linear behaviour of the studied model parameters and by taking into account the criteria of model selection (AICc of each growth curve and the residual variance [RV]), the best model describing the dynamics of epicotyl appearance of pedunculate oak was the Richards curve.

Sigmoid growth curves, a new approach to study the dynamics of the epicotyl emergence of oak

Faculty of Applied Informatics and Mathematics, Department of Econometrics and Statistics, Biometry Division

Forest Research Institute, Department of Silviculture and Genetics of Forest Trees

Folia Forestalia Polonica

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Three of the most frequently used sigmoidal growth curves from the Richards family are the logistic model, Gompertz model and Richards model. They are used in...

Sigmoid growth curves, a new approach to study the dynamics of the epicotyl emergence of oak

Data publikacji: 04 maj 2019

Zakres stron: 30 - 41

Otrzymano: 10 sty 2019

Przyjęty: 05 lut 2019

DOI: https://doi.org/10.2478/ffp-2019-0003

Słowa kluczowe
cumulative germination, Gompertz model, growth curves, logistic model, nonlinear regression, pedunculate oak, Richards model

© 2019 Joanna Ukalska et al., published by Sciendo

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Sigmoid growth curves, a new approach to study the dynamics of the epicotyl emergence of oak

Data publikacji: 04 maj 2019

Zakres stron: 30 - 41

Otrzymano: 10 sty 2019

Przyjęty: 05 lut 2019

DOI: https://doi.org/10.2478/ffp-2019-0003

Słowa kluczowecumulative germination, Gompertz model, growth curves, logistic model, nonlinear regression, pedunculate oak, Richards model

© 2019 Joanna Ukalska et al., published by Sciendo

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Słowa kluczowe
cumulative germination, Gompertz model, growth curves, logistic model, nonlinear regression, pedunculate oak, Richards model