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New molecular markers involved in immune system homeostasis and hemopoietic organ development are differentially regulated during oocytes in vitro maturation

Lisa Moncrieff

Lisa Moncrieff

  • School of Medicine, Medical Sciences and Nutrition, University of AberdeenAberdeen, United Kingdom
  • Department of Histology and Embryology, Poznań University of Medical SciencesPoznań, Poland
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Moncrieff, Lisa
, 
Ievgeniia Kocherova

Ievgeniia Kocherova

Department of Anatomy, Poznan University of Medical SciencesPoznań, Poland
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Kocherova, Ievgeniia
, 
Artur Bryja

Artur Bryja

Department of Anatomy, Poznan University of Medical SciencesPoznań, Poland
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Bryja, Artur
, 
Wiesława Kranc

Wiesława Kranc

Department of Anatomy, Poznan University of Medical SciencesPoznań, Poland
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Kranc, Wiesława
, 
Joanna Perek

Joanna Perek

Department of Anatomy, Poznan University of Medical SciencesPoznań, Poland
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Perek, Joanna
, 
Piotr Celichowski

Piotr Celichowski

Department of Histology and Embryology, Poznań University of Medical SciencesPoznań, Poland
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Celichowski, Piotr
, 
Magdalena Kulus

Magdalena Kulus

Department of Veterinary Surgery, Nicolaus Copernicus University in ToruńToruń, Poland
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Kulus, Magdalena
, 
Bartosz Kempisty

Bartosz Kempisty

  • Department of Histology and Embryology, Poznań University of Medical SciencesPoznań, Poland
  • Department of Anatomy, Poznan University of Medical SciencesPoznań, Poland
  • Department of Veterinary Surgery, Nicolaus Copernicus University in ToruńToruń, Poland
  • Department of Obstetrics and Gynecology, University Hospital and Masaryk UniversityBrno, Czech Republic
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Kempisty, Bartosz
, 
Paul Mozdziak

Paul Mozdziak

Graduate Physiology Program, North Carolina State UniversityRaleigh, USA
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Mozdziak, Paul
 oraz 
Michal Jeseta

Michal Jeseta

Department of Obstetrics and Gynecology, University Hospital and Masaryk UniversityBrno, Czech Republic
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Jeseta, Michal
  
29 kwi 2020
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Data publikacji: 29 kwi 2020
Zakres stron: 35 - 43
Otrzymano: 17 lut 2020
Przyjęty: 02 kwi 2020
DOI: https://doi.org/10.2478/acb-2020-0004
Słowa kluczowe
© 2020 Lisa Moncrieff, Ievgeniia Kocherova, Artur Bryja, Wiesława Kranc, Joanna Perek, Piotr Celichowski, Magdalena Kulus, Bartosz Kempisty, Paul Mozdziak, Michal Jeseta, published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Figure 1

Heat map representations of differentially expressed genes belonging to the “hemopoietic or lymphoid organ development” and “immune system development” GO BP terms. Arbitrary signal intensity acquired from microarray analysis is represented by colours (green, higher; red, lower expression). Log2 signal intensity values for any single gene were resized to Row Z-Score scale (from -2, the lowest expression to +2, the highest expression for single gene)
Heat map representations of differentially expressed genes belonging to the “hemopoietic or lymphoid organ development” and “immune system development” GO BP terms. Arbitrary signal intensity acquired from microarray analysis is represented by colours (green, higher; red, lower expression). Log2 signal intensity values for any single gene were resized to Row Z-Score scale (from -2, the lowest expression to +2, the highest expression for single gene)

Figure 2

The circle plot showing the differently expressed genes and z-score “hemopoietic or lymphoid organ development” and “immune system development” GO BP Terms. The outer circle shows a scatter plot for each term of the fold change of the assigned genes. Red circles display down- regulation and green ones up- regulation. The inner circle shows the z-score of each GO BP term. The width of each bar corresponds to the number of genes within GO BP term and the color corresponds to the z-score
The circle plot showing the differently expressed genes and z-score “hemopoietic or lymphoid organ development” and “immune system development” GO BP Terms. The outer circle shows a scatter plot for each term of the fold change of the assigned genes. Red circles display down- regulation and green ones up- regulation. The inner circle shows the z-score of each GO BP term. The width of each bar corresponds to the number of genes within GO BP term and the color corresponds to the z-score

Figure 3

The representation of the mutual relationship between differently expressed genes that belongs to “hemopoietic or lymphoid organ development” and “immune system development” GO BP Terms. The ribbons indicate which gene belongs to which categories. The middle circle represents logarithm from fold change (LogFC) between before IVM and after IVM respectively. The genes were sorted by logFC from most to least changed gene
The representation of the mutual relationship between differently expressed genes that belongs to “hemopoietic or lymphoid organ development” and “immune system development” GO BP Terms. The ribbons indicate which gene belongs to which categories. The middle circle represents logarithm from fold change (LogFC) between before IVM and after IVM respectively. The genes were sorted by logFC from most to least changed gene

Figure 4

STRING-generated interaction network between genes that belongs to the “hemopoietic or lymphoid organ development” and “immune system development” GO BP Terms. The intensity of the edges reflects the strength of interaction score
STRING-generated interaction network between genes that belongs to the “hemopoietic or lymphoid organ development” and “immune system development” GO BP Terms. The intensity of the edges reflects the strength of interaction score
Język:
Angielski
Częstotliwość wydawania:
4 razy w roku
Dziedziny czasopisma:
Nauki biologiczne, Biologia molekularna, Biochemia
Kanał RSS czasopisma