Otwarty dostęp

Transcriptomic analysis of Bursaphelenchus xylophilus treated by a potential phytonematicide, punicalagin


Zacytuj

Conesa, A. and Götz, S. 2008. Blast2GO: a comprehensive suite for functional analysis in plant genomics. International Journal of Plant Genomics. DOI: 10.1155/2008/619832. Conesa A. and Götz S. 2008 . Blast2GO: a comprehensive suite for functional analysis in plant genomics . International Journal of Plant Genomics DOI: 10.1155/2008/619832 . 10.1155/2008/619832237597418483572 Search in Google Scholar

Funabara, D., Hamamoto, C., Yamamoto, K., Inoue, A., Ueda, M., Osawa, R., Kanoh, S., Hartshorne, D.J., Suzuki, S. and Watabe, S. 2007. Unphosphorylated twitchin forms a complex with actin and myosin that may contribute to tension maintenance in catch. Journal of Experimental Biology 210:4399–4410. Funabara D. Hamamoto C. Yamamoto K. Inoue A. Ueda M. Osawa R. Kanoh S. Hartshorne D.J. Suzuki S. and Watabe S. 2007 . Unphosphorylated twitchin forms a complex with actin and myosin that may contribute to tension maintenance in catch . Journal of Experimental Biology 210 : 4399 4410 . 10.1242/jeb.008722221954518055628 Search in Google Scholar

Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Adiconis, Amit, I. X., Fan, L., Raychowdhury, R. and Zeng, Q. D. 2011. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology 29:644–652. Grabherr M. G. Haas B. J. Yassour M. Levin J. Z. Thompson D. A. Adiconis Amit I. X. Fan L. Raychowdhury R. and Zeng Q. D. 2011 . Full-length transcriptome assembly from RNA-Seq data without a reference genome . Nature Biotechnology 29 : 644 652 . 10.1038/nbt.1883357171221572440 Search in Google Scholar

Gray, H.B. and Winkler, J. R. 1996. Electron transfer in proteins. Annual Review of Biochemistry 65:537–561. Gray H.B. and Winkler J. R. 1996 . Electron transfer in proteins . Annual Review of Biochemistry 65 : 537 561 . 10.1146/annurev.bi.65.070196.0025418811189 Search in Google Scholar

Guo, Q. Q., Du, G. C., He, H. W., Xu, H. K., Guo, D. S. and Li, R. G. 2016. Two nematocidal furocoumarins from Ficus carica L. leaves and their physiological effects on pine wood nematode (Bursaphelenchus xylophilus). Natural Product Research 30:1969–1973. Guo Q. Q. Du G. C. He H. W. Xu H. K. Guo D. S. and Li R. G. 2016 . Two nematocidal furocoumarins from Ficus carica L. leaves and their physiological effects on pine wood nematode (Bursaphelenchus xylophilus) . Natural Product Research 30 : 1969 1973 . 10.1080/14786419.2015.109480426479900 Search in Google Scholar

Guo, Q. Q., Du, G. C., Li, Y. X., Liang, C. Y., Wang, C., Zhang, Y. N. and Li, R. G. 2018. Nematotoxic coumarins from Angelica pubescens Maxim. f. biserrata Shan et Yuan roots and their physiological effects on Bursaphelenchus xylophilus. Journal of Nematology 50:1–10 Guo Q. Q. Du G. C. Li Y. X. Liang C. Y. Wang C. Zhang Y. N. and Li R. G. 2018 . Nematotoxic coumarins from Angelica pubescens Maxim. f. biserrata Shan et Yuan roots and their physiological effects on Bursaphelenchus xylophilus . Journal of Nematology 50 : 1 10 10.21307/jofnem-2018-045690931131094158 Search in Google Scholar

Guo, Q. Q., Du, G. C., Qi, H. T., Zhang, Y. N., Yue, T. Q., Wang, J. C. and Li, R. G. 2017. A nematicidal tannin from Punica granatum L. rind and its physiological effect on pine wood nematode (Bursaphelenchus xylophilus). Pesticide Biochemistry and Physiology 135:64–68. Guo Q. Q. Du G. C. Qi H. T. Zhang Y. N. Yue T. Q. Wang J. C. and Li R. G. 2017 . A nematicidal tannin from Punica granatum L. rind and its physiological effect on pine wood nematode (Bursaphelenchus xylophilus) . Pesticide Biochemistry and Physiology 135 : 64 68 . 10.1016/j.pestbp.2016.06.00328043333 Search in Google Scholar

Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B. and Lieber, M. 2013. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nature Protocols 8:1494–512. Haas B. J. Papanicolaou A. Yassour M. Grabherr M. Blood P. D. Bowden J. Couger M. B. Eccles D. Li B. and Lieber M. 2013 . De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis . Nature Protocols 8 : 1494 512 . 10.1038/nprot.2013.084387513223845962 Search in Google Scholar

Han, Y., Gao, S., Muegge, K., Zhang, W. and Zhou, B. 2015. Advanced applications of RNA sequencing and challenges. Bioinformatics and Biology Insights 9(S1):29–46. Han Y. Gao S. Muegge K. Zhang W. and Zhou B. 2015 . Advanced applications of RNA sequencing and challenges . Bioinformatics and Biology Insights 9 (S1) : 29 46 . 10.4137/BBI.S28991464856626609224 Search in Google Scholar

Hatefi, Y. 1985. The mitochondrial electron transport and oxidative phosphorylation system. Annual Review of Biochemistry 54:1015–1069. Hatefi Y. 1985 . The mitochondrial electron transport and oxidative phosphorylation system . Annual Review of Biochemistry 54 : 1015 1069 . 10.1146/annurev.bi.54.070185.0050552862839 Search in Google Scholar

Huang, T., Lin, Q., Qian, X., Zheng, Y., Yao, J., Wu, H., Li, M., Jin, X., Pan, X., Zhang, L. and Guan, X. 2017. Nematicidal activity of Cry1Ea11 from bacillus thuringiensis brc-xq12 against the pine wood nematode (Bursaphelenchus xylophilus). Phytopathology 108:44–51. Huang T. Lin Q. Qian X. Zheng Y. Yao J. Wu H. Li M. Jin X. Pan X. Zhang L. and Guan X. 2017 . Nematicidal activity of Cry1Ea11 from bacillus thuringiensis brc-xq12 against the pine wood nematode (Bursaphelenchus xylophilus) . Phytopathology 108 : 44 51 . 10.1094/PHYTO-05-17-0179-R Search in Google Scholar

Kim, E., Kim, J. and Park, I. K. 2011. Nematicidal activity of Korean domestic plant extracts against the pine wood nematode, Bursaphelenchus xylophilus. Nematology 13:377–380. Kim E. Kim J. and Park I. K. 2011 . Nematicidal activity of Korean domestic plant extracts against the pine wood nematode, Bursaphelenchus xylophilus . Nematology 13 : 377 380 . 10.1163/138855410X543517 Search in Google Scholar

Lee, H. R., Lee, S. C., Lee, J. E., Seo, S. M., Jeong, Y. C., Jung, C. S., Moloney, M. G. and Park, I. K. 2017. Nematicidal activity of 3-acyltetramic acid analogues against pine wood nematode, Bursaphelenchus xylophilus. Molecules 22:1568–1575. Lee H. R. Lee S. C. Lee J. E. Seo S. M. Jeong Y. C. Jung C. S. Moloney M. G. and Park I. K. 2017 . Nematicidal activity of 3-acyltetramic acid analogues against pine wood nematode, Bursaphelenchus xylophilus . Molecules 22 : 1568 1575 . 10.3390/molecules22091568 Search in Google Scholar

Li, B. and Dewey, C. N. 2011. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12:323–338. Li B. and Dewey C. N. 2011 . RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome . BMC Bioinformatics 12 : 323 338 . 10.1186/1471-2105-12-323 Search in Google Scholar

Livak, K. J. and Schmittgen, T. D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 25:402–408. Livak K. J. and Schmittgen T. D. 2001 . Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔC T method . Methods 25 : 402 408 . 10.1006/meth.2001.1262 Search in Google Scholar

Mamiya, Y. 1983. Pathology of the pine wilt disease caused by Bursaphelenchus xylophilus. Annual Review of Phytopathology 21:201–220. Mamiya Y. 1983 . Pathology of the pine wilt disease caused by Bursaphelenchus xylophilus . Annual Review of Phytopathology 21 : 201 220 . 10.1146/annurev.py.21.090183.001221 Search in Google Scholar

Mota, M. M., Braasch, H. M., Bravo, A. A., Penas, C., Burgemeister, W., Metge, K. and Sousa, E. 1999. First report of Bursaphelenchus xylophilus in Portugal and in Europe. Nematology 1:727–734. Mota M. M. Braasch H. M. Bravo A. A. Penas C. Burgemeister W. Metge K. and Sousa E. 1999 . First report of Bursaphelenchus xylophilus in Portugal and in Europe . Nematology 1 : 727 734 . 10.1163/156854199508757 Search in Google Scholar

Park, I. K., Kim, J., Lee, S. G. and Shin, S. C. 2007. Nematicidal activity of plant essential oils and components from Ajowan (Trachyspermum ammi), all spice (Pimenta dioica) and Litsea (Litsea cubeba) essential oils against pine wood nematode (Bursaphelenchus xylophilus). Journal of Nematology 39:275–279. Park I. K. Kim J. Lee S. G. and Shin S. C. 2007 . Nematicidal activity of plant essential oils and components from Ajowan (Trachyspermum ammi), all spice (Pimenta dioica) and Litsea (Litsea cubeba) essential oils against pine wood nematode (Bursaphelenchus xylophilus) . Journal of Nematology 39 : 275 279 . Search in Google Scholar

Rabinovitch, M. 1995. Professional and non-professional phagocytes: an introduction. Trends in Cell Biology 5:85–87. Rabinovitch M. 1995 . Professional and non-professional phagocytes: an introduction . Trends in Cell Biology 5 : 85 87 . 10.1016/S0962-8924(00)88955-2 Search in Google Scholar

Revel, A. T., Talaat, A. M. and Norgard, M. V. 2002. DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete. Proceedings of the National Academy of Sciences of the United States of America 99:1562–1567. Revel A. T. Talaat A. M. and Norgard M. V. 2002 . DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete . Proceedings of the National Academy of Sciences of the United States of America 99 : 1562 1567 . 10.1073/pnas.03266769912223011830671 Search in Google Scholar

Seo, S. M., Kim, J. S., Koh, H., Ahn, Y. J. and Park, I. K. 2014. Nematicidal activity of natural ester compounds and their analogues against pine wood nematode, Bursaphelenchus xylophilus. Journal of Agricultural and Food Chemistry 62:9103–9108. Seo S. M. Kim J. S. Koh H. Ahn Y. J. and Park I. K . 2014 . Nematicidal activity of natural ester compounds and their analogues against pine wood nematode, Bursaphelenchus xylophilus . Journal of Agricultural and Food Chemistry 62 : 9103 9108 . 10.1021/jf503631e25153339 Search in Google Scholar

Viglierchio, D. R. and Schmit, R. V. 1983. On the methodology of nematode extraction from field samples: Baermann funnel modifications. Journal of Nematology 15:438–444. Viglierchio D. R. and Schmit R. V. 1983 . On the methodology of nematode extraction from field samples: Baermann funnel modifications . Journal of Nematology 15 : 438 444 . Search in Google Scholar

Wang, J., Pan, X., Han, Y., Guo, D., Guo, Q. and Li, R. 2012. Rosmarinic acid from eelgrass shows nematicidal and antibacterial activities against pine wood nematode and its carrying bacteria. Marine Drugs 10:2729–2740. Wang J. Pan X. Han Y. Guo D. Guo Q. and Li R. 2012 . Rosmarinic acid from eelgrass shows nematicidal and antibacterial activities against pine wood nematode and its carrying bacteria . Marine Drugs 10 : 2729 2740 . 10.3390/md10122729352812223201594 Search in Google Scholar

Wang, Z., Gerstein, M. and Snyder, M. 2009. RNA-Seq: a revolutionary tool for transcriptomics. Nature Reviews Genetics 10:57–63. Wang Z. Gerstein M. and Snyder M. 2009 . RNA-Seq: a revolutionary tool for transcriptomics . Nature Reviews Genetics 10 : 57 63 . 10.1038/nrg2484294928019015660 Search in Google Scholar

Xie, C., Mao, X. Z., Huang, J. J., Ding, Y., Wu, J. M., Dong, S., Kong, L., Gao, G., Li, C. Y. and Wei, L. P. 2011. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Research 39:W316–W322. Xie C. Mao X. Z. Huang J. J. Ding Y. Wu J. M. Dong S. Kong L. Gao G. Li C. Y. and Wei L. P. 2011 . KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases . Nucleic Acids Research 39 : W316 W322 . 10.1093/nar/gkr483312580921715386 Search in Google Scholar

Yu, J., Du, G., Li, R., Li, L., Li, Z., Zhou, C., Chen, C. and Guo, D. 2015. Nematicidal activities of bacterial volatiles and components from two marine bacteria, Pseudoalteromonas marinastrain H-42 and Vibrio atlanticusstrain S-16, against the pine wood nematode, Bursaphelenchus xylophilus. Nematology 17:1011–1025. Yu J. Du G. Li R. Li L. Li Z. Zhou C. Chen C. and Guo D. 2015 . Nematicidal activities of bacterial volatiles and components from two marine bacteria, Pseudoalteromonas marinastrain H-42 and Vibrio atlanticusstrain S-16, against the pine wood nematode, Bursaphelenchus xylophilus . Nematology 17 : 1011 1025 . 10.1163/15685411-00002920 Search in Google Scholar

eISSN:
2640-396X
Język:
Angielski
Częstotliwość wydawania:
Volume Open
Dziedziny czasopisma:
Life Sciences, other