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Conesa, A. and Götz, S. 2008. Blast2GO: a comprehensive suite for functional analysis in plant genomics. International Journal of Plant Genomics. DOI: 10.1155/2008/619832.ConesaA. and GötzS.2008. Blast2GO: a comprehensive suite for functional analysis in plant genomics. DOI: 10.1155/2008/619832.10.1155/2008/619832237597418483572Search in Google Scholar
Funabara, D., Hamamoto, C., Yamamoto, K., Inoue, A., Ueda, M., Osawa, R., Kanoh, S., Hartshorne, D.J., Suzuki, S. and Watabe, S. 2007. Unphosphorylated twitchin forms a complex with actin and myosin that may contribute to tension maintenance in catch. Journal of Experimental Biology 210:4399–4410.FunabaraD.HamamotoC.YamamotoK.InoueA.UedaM.OsawaR.KanohS.HartshorneD.J.SuzukiS. and WatabeS.2007. Unphosphorylated twitchin forms a complex with actin and myosin that may contribute to tension maintenance in catch. 210:4399–4410.10.1242/jeb.008722221954518055628Search in Google Scholar
Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Adiconis, Amit, I. X., Fan, L., Raychowdhury, R. and Zeng, Q. D. 2011. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology 29:644–652.GrabherrM. G.HaasB. J.YassourM.LevinJ. Z.ThompsonD. A.AdiconisAmitI. X.FanL.RaychowdhuryR. and ZengQ. D.2011. Full-length transcriptome assembly from RNA-Seq data without a reference genome. 29:644–652.10.1038/nbt.1883357171221572440Search in Google Scholar
Gray, H.B. and Winkler, J. R. 1996. Electron transfer in proteins. Annual Review of Biochemistry 65:537–561.GrayH.B. and WinklerJ. R.1996. Electron transfer in proteins. 65:537–561.10.1146/annurev.bi.65.070196.0025418811189Search in Google Scholar
Guo, Q. Q., Du, G. C., He, H. W., Xu, H. K., Guo, D. S. and Li, R. G. 2016. Two nematocidal furocoumarins from Ficus carica L. leaves and their physiological effects on pine wood nematode (Bursaphelenchus xylophilus). Natural Product Research 30:1969–1973.GuoQ. Q.DuG. C.HeH. W.XuH. K.GuoD. S. and LiR. G.2016. Two nematocidal furocoumarins from Ficus carica L. leaves and their physiological effects on pine wood nematode (Bursaphelenchus xylophilus). 30:1969–1973.10.1080/14786419.2015.109480426479900Search in Google Scholar
Guo, Q. Q., Du, G. C., Li, Y. X., Liang, C. Y., Wang, C., Zhang, Y. N. and Li, R. G. 2018. Nematotoxic coumarins from Angelica pubescens Maxim. f. biserrata Shan et Yuan roots and their physiological effects on Bursaphelenchus xylophilus. Journal of Nematology 50:1–10GuoQ. Q.DuG. C.LiY. X.LiangC. Y.WangC.ZhangY. N. and LiR. G.2018. Nematotoxic coumarins from Angelica pubescens Maxim. f. biserrata Shan et Yuan roots and their physiological effects on Bursaphelenchus xylophilus. 50:1–1010.21307/jofnem-2018-045690931131094158Search in Google Scholar
Guo, Q. Q., Du, G. C., Qi, H. T., Zhang, Y. N., Yue, T. Q., Wang, J. C. and Li, R. G. 2017. A nematicidal tannin from Punica granatum L. rind and its physiological effect on pine wood nematode (Bursaphelenchus xylophilus). Pesticide Biochemistry and Physiology 135:64–68.GuoQ. Q.DuG. C.QiH. T.ZhangY. N.YueT. Q.WangJ. C. and LiR. G.2017. A nematicidal tannin from Punica granatum L. rind and its physiological effect on pine wood nematode (Bursaphelenchus xylophilus). 135:64–68.10.1016/j.pestbp.2016.06.00328043333Search in Google Scholar
Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B. and Lieber, M. 2013. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nature Protocols 8:1494–512.HaasB. J.PapanicolaouA.YassourM.GrabherrM.BloodP. D.BowdenJ.CougerM. B.EcclesD.LiB. and LieberM.2013. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. 8:1494–512.10.1038/nprot.2013.084387513223845962Search in Google Scholar
Han, Y., Gao, S., Muegge, K., Zhang, W. and Zhou, B. 2015. Advanced applications of RNA sequencing and challenges. Bioinformatics and Biology Insights 9(S1):29–46.HanY.GaoS.MueggeK.ZhangW. and ZhouB.2015. Advanced applications of RNA sequencing and challenges. 9(S1):29–46.10.4137/BBI.S28991464856626609224Search in Google Scholar
Hatefi, Y. 1985. The mitochondrial electron transport and oxidative phosphorylation system. Annual Review of Biochemistry 54:1015–1069.HatefiY.1985. The mitochondrial electron transport and oxidative phosphorylation system. 54:1015–1069.10.1146/annurev.bi.54.070185.0050552862839Search in Google Scholar
Huang, T., Lin, Q., Qian, X., Zheng, Y., Yao, J., Wu, H., Li, M., Jin, X., Pan, X., Zhang, L. and Guan, X. 2017. Nematicidal activity of Cry1Ea11 from bacillus thuringiensis brc-xq12 against the pine wood nematode (Bursaphelenchus xylophilus). Phytopathology 108:44–51.HuangT.LinQ.QianX.ZhengY.YaoJ.WuH.LiM.JinX.PanX.ZhangL. and GuanX.2017. Nematicidal activity of Cry1Ea11 from bacillus thuringiensis brc-xq12 against the pine wood nematode (Bursaphelenchus xylophilus). 108:44–51.10.1094/PHYTO-05-17-0179-RSearch in Google Scholar
Kim, E., Kim, J. and Park, I. K. 2011. Nematicidal activity of Korean domestic plant extracts against the pine wood nematode, Bursaphelenchus xylophilus. Nematology 13:377–380.KimE.KimJ. and ParkI. K.2011. Nematicidal activity of Korean domestic plant extracts against the pine wood nematode, Bursaphelenchus xylophilus. 13:377–380.10.1163/138855410X543517Search in Google Scholar
Lee, H. R., Lee, S. C., Lee, J. E., Seo, S. M., Jeong, Y. C., Jung, C. S., Moloney, M. G. and Park, I. K. 2017. Nematicidal activity of 3-acyltetramic acid analogues against pine wood nematode, Bursaphelenchus xylophilus. Molecules 22:1568–1575.LeeH. R.LeeS. C.LeeJ. E.SeoS. M.JeongY. C.JungC. S.MoloneyM. G. and ParkI. K.2017. Nematicidal activity of 3-acyltetramic acid analogues against pine wood nematode, Bursaphelenchus xylophilus. 22:1568–1575.10.3390/molecules22091568Search in Google Scholar
Li, B. and Dewey, C. N. 2011. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12:323–338.LiB. and DeweyC. N.2011. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. 12:323–338.10.1186/1471-2105-12-323Search in Google Scholar
Livak, K. J. and Schmittgen, T. D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 25:402–408.LivakK. J. and SchmittgenT. D.2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. 25:402–408.10.1006/meth.2001.1262Search in Google Scholar
Mamiya, Y. 1983. Pathology of the pine wilt disease caused by Bursaphelenchus xylophilus. Annual Review of Phytopathology 21:201–220.MamiyaY.1983. Pathology of the pine wilt disease caused by Bursaphelenchus xylophilus. 21:201–220.10.1146/annurev.py.21.090183.001221Search in Google Scholar
Mota, M. M., Braasch, H. M., Bravo, A. A., Penas, C., Burgemeister, W., Metge, K. and Sousa, E. 1999. First report of Bursaphelenchus xylophilus in Portugal and in Europe. Nematology 1:727–734.MotaM. M.BraaschH. M.BravoA. A.PenasC.BurgemeisterW.MetgeK. and SousaE.1999. First report of Bursaphelenchus xylophilus in Portugal and in Europe. 1:727–734.10.1163/156854199508757Search in Google Scholar
Park, I. K., Kim, J., Lee, S. G. and Shin, S. C. 2007. Nematicidal activity of plant essential oils and components from Ajowan (Trachyspermum ammi), all spice (Pimenta dioica) and Litsea (Litsea cubeba) essential oils against pine wood nematode (Bursaphelenchus xylophilus). Journal of Nematology 39:275–279.ParkI. K.KimJ.LeeS. G. and ShinS. C.2007. Nematicidal activity of plant essential oils and components from Ajowan (Trachyspermum ammi), all spice (Pimenta dioica) and Litsea (Litsea cubeba) essential oils against pine wood nematode (Bursaphelenchus xylophilus). 39:275–279.Search in Google Scholar
Rabinovitch, M. 1995. Professional and non-professional phagocytes: an introduction. Trends in Cell Biology 5:85–87.RabinovitchM.1995. Professional and non-professional phagocytes: an introduction. 5:85–87.10.1016/S0962-8924(00)88955-2Search in Google Scholar
Revel, A. T., Talaat, A. M. and Norgard, M. V. 2002. DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete. Proceedings of the National Academy of Sciences of the United States of America 99:1562–1567.RevelA. T.TalaatA. M. and NorgardM. V.2002. DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete. 99:1562–1567.10.1073/pnas.03266769912223011830671Search in Google Scholar
Seo, S. M., Kim, J. S., Koh, H., Ahn, Y. J. and Park, I. K. 2014. Nematicidal activity of natural ester compounds and their analogues against pine wood nematode, Bursaphelenchus xylophilus. Journal of Agricultural and Food Chemistry 62:9103–9108.SeoS. M.KimJ. S.KohH.AhnY. J. and ParkI. K. 2014. Nematicidal activity of natural ester compounds and their analogues against pine wood nematode, Bursaphelenchus xylophilus. 62:9103–9108.10.1021/jf503631e25153339Search in Google Scholar
Viglierchio, D. R. and Schmit, R. V. 1983. On the methodology of nematode extraction from field samples: Baermann funnel modifications. Journal of Nematology 15:438–444.ViglierchioD. R. and SchmitR. V.1983. On the methodology of nematode extraction from field samples: Baermann funnel modifications. 15:438–444.Search in Google Scholar
Wang, J., Pan, X., Han, Y., Guo, D., Guo, Q. and Li, R. 2012. Rosmarinic acid from eelgrass shows nematicidal and antibacterial activities against pine wood nematode and its carrying bacteria. Marine Drugs 10:2729–2740.WangJ.PanX.HanY.GuoD.GuoQ. and LiR.2012. Rosmarinic acid from eelgrass shows nematicidal and antibacterial activities against pine wood nematode and its carrying bacteria. 10:2729–2740.10.3390/md10122729352812223201594Search in Google Scholar
Wang, Z., Gerstein, M. and Snyder, M. 2009. RNA-Seq: a revolutionary tool for transcriptomics. Nature Reviews Genetics 10:57–63.WangZ.GersteinM. and SnyderM.2009. RNA-Seq: a revolutionary tool for transcriptomics. 10:57–63.10.1038/nrg2484294928019015660Search in Google Scholar
Xie, C., Mao, X. Z., Huang, J. J., Ding, Y., Wu, J. M., Dong, S., Kong, L., Gao, G., Li, C. Y. and Wei, L. P. 2011. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Research 39:W316–W322.XieC.MaoX. Z.HuangJ. J.DingY.WuJ. M.DongS.KongL.GaoG.LiC. Y. and WeiL. P.2011. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. 39:W316–W322.10.1093/nar/gkr483312580921715386Search in Google Scholar
Yu, J., Du, G., Li, R., Li, L., Li, Z., Zhou, C., Chen, C. and Guo, D. 2015. Nematicidal activities of bacterial volatiles and components from two marine bacteria, Pseudoalteromonas marinastrain H-42 and Vibrio atlanticusstrain S-16, against the pine wood nematode, Bursaphelenchus xylophilus. Nematology 17:1011–1025.YuJ.DuG.LiR.LiL.LiZ.ZhouC.ChenC. and GuoD.2015. Nematicidal activities of bacterial volatiles and components from two marine bacteria, Pseudoalteromonas marinastrain H-42 and Vibrio atlanticusstrain S-16, against the pine wood nematode, Bursaphelenchus xylophilus. 17:1011–1025.10.1163/15685411-00002920Search in Google Scholar