<abstract xmlns="http://www.w3.org/1999/xhtml"><p>Seven genomic SSR markers of <italic>Eucalyptus</italic> were developed from DNA sequences of <italic>E. grandis</italic> deposited in GenBank. Their repeat motifs were revealed by resequencing with an individual tree of <italic>E. urophylla</italic> or <italic>E. tereticornis</italic>, and five out of the seven markers turned out to be heterozygous within the specific tree sequenced. The sequence identity ranged from 75.06% to 96.66%, with an average of 87.31%. These markers could be valuable in genetics studies in <italic>Eucalyptus</italic>. This report demonstrates the advantages of re-sequencing in developing SSR markers from publicly accessible databases.</p></abstract>

Seven genomic SSR markers of Eucalyptus were developed from DNA sequences of E. grandis deposited in GenBank. Their repeat motifs were revealed by resequencing with an individual tree of E. urophylla or E. tereticornis, and five out of the seven markers turned out to be heterozygous within the specific tree sequenced. The sequence identity ranged from 75.06% to 96.66%, with an average of 87.31%. These markers could be valuable in genetics studies in Eucalyptus. This report demonstrates the advantages of re-sequencing in developing SSR markers from publicly accessible databases.

Short Note: Seven Genomic SSRs Revealed in <italic>Eucalyptus</italic> by Re-sequencing of DNA Sequences from GenBank

Research Institute of Tropical Forestry and National Key Laboratory of Forest Tree Genetics and Breeding

The Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education

Silvae Genetica

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Short Note: Seven Genomic SSRs Revealed in  by Re-sequencing of DNA Sequences from GenBank

Seven genomic SSR markers of Eucalyptus were developed from DNA sequences of E. grandis deposited in GenBank. Their repeat motifs were revealed by resequencing...

Short Note: Seven Genomic SSRs Revealed in Eucalyptus by Re-sequencing of DNA Sequences from GenBank

Pubblicato online: 05 ago 2017

Pagine: 92 - 94

Ricevuto: 28 gen 2010

DOI: https://doi.org/10.1515/sg-2011-0013

Parole chiave
Simple sequence repeats (SSRs), microsatellites, molecular markers, re-sequencing

© 2011 X. He et al., published by De Gruyter Open

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Short Note: Seven Genomic SSRs Revealed in Eucalyptus by Re-sequencing of DNA Sequences from GenBank

Pubblicato online: 05 ago 2017

Pagine: 92 - 94

Ricevuto: 28 gen 2010

DOI: https://doi.org/10.1515/sg-2011-0013

Parole chiaveSimple sequence repeats (SSRs), microsatellites, molecular markers, re-sequencing

© 2011 X. He et al., published by De Gruyter Open

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Parole chiave
Simple sequence repeats (SSRs), microsatellites, molecular markers, re-sequencing