Acceso abierto

Development and Evaluation of a Rapid GII Norovirus Detection Method Based on CRISPR-Cas12a


Cite

Broughton JP, Deng X, Yu G, Fasching CL, Servellita V, Singh J, Miao X, Streithorst JA, Granados A, Sotomayor-Gonzalez A, et al. CRISPR-Cas12-based detection of SARS-CoV-2. Nat Biotechnol. 2020 Jul;38(7):870–874. https://doi.org/10.1038/s41587-020-0513-4 Broughton JP Deng X Yu G Fasching CL Servellita V Singh J Miao X Streithorst JA Granados A Sotomayor-Gonzalez A CRISPR-Cas12-based detection of SARS-CoV-2 . Nat Biotechnol . 2020 Jul ; 38 ( 7 ): 870 874 . https://doi.org/10.1038/s41587-020-0513-4 Search in Google Scholar

Chen LN, Wang SJ, Wang SM, Fu XL, Zheng WJ, Hao ZY, Zhou HS, Zhang XJ, Zhao YL, Qiu C, et al. Molecular epidemiology analysis of symptomatic and asymptomatic norovirus infections in Chinese infants. Virol J. 2023 Apr;20(1):60. https://doi.org/10.1186/s12985-023-02024-z Chen LN Wang SJ Wang SM Fu XL Zheng WJ Hao ZY Zhou HS Zhang XJ Zhao YL Qiu C Molecular epidemiology analysis of symptomatic and asymptomatic norovirus infections in Chinese infants . Virol J . 2023 Apr ; 20 ( 1 ): 60 . https://doi.org/10.1186/s12985-023-02024-z Search in Google Scholar

Chhabra P, de Graaf M, Parra GI, Chan MC, Green K, Martella V, Wang Q, White PA, Katayama K, Vennema H, et al. Updated classification of norovirus genogroups and genotypes. J Gen Virol. 2019 Oct;100(10):1393–1406. https://doi.org/10.1099/jgv.0.001318 Chhabra P de Graaf M Parra GI Chan MC Green K Martella V Wang Q White PA Katayama K Vennema H Updated classification of norovirus genogroups and genotypes . J Gen Virol . 2019 Oct ; 100 ( 10 ): 1393 1406 . https://doi.org/10.1099/jgv.0.001318 Search in Google Scholar

Chin NA, Salihah NT, Shivanand P, Ahmed MU. Recent trends and developments of PCR-based methods for the detection of food-borne Salmonella bacteria and Norovirus. J Food Sci Technol. 2022 Dec;59(12):4570–4582. https://doi.org/10.1007/s13197-021-05280-5 Chin NA Salihah NT Shivanand P Ahmed MU. Recent trends and developments of PCR-based methods for the detection of food-borne Salmonella bacteria and Norovirus . J Food Sci Technol . 2022 Dec ; 59 ( 12 ): 4570 4582 . https://doi.org/10.1007/s13197-021-05280-5 Search in Google Scholar

Ettayebi K, Crawford SE, Murakami K, Broughman JR, Karandikar U, Tenge VR, Neill FH, Blutt SE, Zeng XL, Qu L, et al. Replication of human noroviruses in stem cell-derived human enteroids. Science. 2016 Sep;353(6306):1387–1393. https://doi.org/10.1126/science.aaf5211 Ettayebi K Crawford SE Murakami K Broughman JR Karandikar U Tenge VR Neill FH Blutt SE Zeng XL Qu L Replication of human noroviruses in stem cell-derived human enteroids . Science . 2016 Sep ; 353 ( 6306 ): 1387 1393 . https://doi.org/10.1126/science.aaf5211 Search in Google Scholar

Fernández JM, Gómez JB. [Norovirus infections] (in Spanish). Enferm Infecc Microbiol Clin. 2010 Jan;28(Suppl 1):51–55. https://doi.org/10.1016/s0213-005x(10)70009-4 Fernández JM Gómez JB. [Norovirus infections] (in Spanish) . Enferm Infecc Microbiol Clin . 2010 Jan ; 28 ( Suppl 1 ): 51 55 . https://doi.org/10.1016/s0213-005x(10)70009-4 Search in Google Scholar

Jiang T, Hu X, Lin C, Xia Z, Yang W, Zhu Y, Xu H, Tang H, Shen J. Rapid visualization of Clostridioides difficile toxins A and B by multiplex RPA combined with CRISPR-Cas12a. Front Microbiol. 2023 Mar;14:1119395. https://doi.org/10.3389/fmicb.2023.1119395 Jiang T Hu X Lin C Xia Z Yang W Zhu Y Xu H Tang H Shen J. Rapid visualization of Clostridioides difficile toxins A and B by multiplex RPA combined with CRISPR-Cas12a . Front Microbiol . 2023 Mar ; 14 : 1119395 . https://doi.org/10.3389/fmicb.2023.1119395 Search in Google Scholar

Jones MK, Watanabe M, Zhu S, Graves CL, Keyes LR, Grau KR, Gonzalez-Hernandez MB, Iovine NM, Wobus CE, Vinjé J, et al. Enteric bacteria promote human and mouse norovirus infection of B cells. Science. 2014 Nov;346(6210):755–759. https://doi.org/10.1126/science.1257147 Jones MK Watanabe M Zhu S Graves CL Keyes LR Grau KR Gonzalez-Hernandez MB Iovine NM Wobus CE Vinjé J Enteric bacteria promote human and mouse norovirus infection of B cells . Science . 2014 Nov ; 346 ( 6210 ): 755 759 . https://doi.org/10.1126/science.1257147 Search in Google Scholar

Kanwar N, Hassan F, Barclay L, Langley C, Vinjé J, Bryant PW, George KS, Mosher L, Matthews-Greer JM, Rocha MA, et al. Evaluation of RIDA®GENE norovirus GI/GII real time RT-PCR using stool specimens collected from children and adults with acute gastroenteritis. J Clin Virol. 2018 Jul;104:1–4. https://doi.org/10.1016/j.jcv.2018.04.006 Kanwar N Hassan F Barclay L Langley C Vinjé J Bryant PW George KS Mosher L Matthews-Greer JM Rocha MA Evaluation of RIDA®GENE norovirus GI/GII real time RT-PCR using stool specimens collected from children and adults with acute gastroenteritis . J Clin Virol . 2018 Jul ; 104 : 1 4 . https://doi.org/10.1016/j.jcv.2018.04.006 Search in Google Scholar

Kapikian AZ, Wyatt RG, Dolin R, Thornhill TS, Kalica AR, Chanock RM. Visualization by immune electron microscopy of a 27-nm particle associated with acute infectious nonbacterial gastroenteritis. J Virol. 1972 Nov;10(5):1075–1081. https://doi.org/10.1128/jvi.10.5.1075-1081.1972 Kapikian AZ Wyatt RG Dolin R Thornhill TS Kalica AR Chanock RM. Visualization by immune electron microscopy of a 27-nm particle associated with acute infectious nonbacterial gastroenteritis . J Virol . 1972 Nov ; 10 ( 5 ): 1075 1081 . https://doi.org/10.1128/jvi.10.5.1075-1081.1972 Search in Google Scholar

Kele B, Lengyel G, Deak J. Comparison of an ELISA and two reverse transcription polymerase chain reaction methods for norovirus detection. Diagn Microbiol Infect Dis. 2011 Aug;70(4):475–478. https://doi.org/10.1016/j.diagmicrobio.2011.04.002 Kele B Lengyel G Deak J. Comparison of an ELISA and two reverse transcription polymerase chain reaction methods for norovirus detection . Diagn Microbiol Infect Dis . 2011 Aug ; 70 ( 4 ): 475 478 . https://doi.org/10.1016/j.diagmicrobio.2011.04.002 Search in Google Scholar

Li M, Li K, Lan H, Hao X, Liu Y, Zhou C. Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China. Open Life Sci. 2022 Nov;17(1):1429–1435. https://doi.org/10.1515/biol-2022-0511 Li M Li K Lan H Hao X Liu Y Zhou C. Investigation of genotype diversity of 7,804 norovirus sequences in humans and animals of China . Open Life Sci . 2022 Nov ; 17 ( 1 ): 1429 1435 . https://doi.org/10.1515/biol-2022-0511 Search in Google Scholar

Lian Y, Wu S, Luo L, Lv B, Liao Q, Li Z, Rainey JJ, Hall AJ, Ran L. Epidemiology of norovirus outbreaks reported to The Public Health Emergency Event Surveillance System, China, 2014–2017. Viruses. 2019 Apr;11(4):342. https://doi.org/10.3390/v11040342 Lian Y Wu S Luo L Lv B Liao Q Li Z Rainey JJ Hall AJ Ran L. Epidemiology of norovirus outbreaks reported to The Public Health Emergency Event Surveillance System, China, 2014–2017 . Viruses . 2019 Apr ; 11 ( 4 ): 342 . https://doi.org/10.3390/v11040342 Search in Google Scholar

Liu B, Wang Y, Wang X, Jia L, Tian Y, Yan H, Li W, Shen L, Wang Q, Gao Z. Excess acute diarrhoea cases attributed to norovirus variants in Beijing, China between 2011 and 2018. J Med Virol. 2023 Mar; 95(3):e28627. https://doi.org/10.1002/jmv.28627 Liu B Wang Y Wang X Jia L Tian Y Yan H Li W Shen L Wang Q Gao Z. Excess acute diarrhoea cases attributed to norovirus variants in Beijing, China between 2011 and 2018 . J Med Virol . 2023 Mar ; 95 ( 3 ): e28627 . https://doi.org/10.1002/jmv.28627 Search in Google Scholar

Liu G, Lin Q, Jin S, Gao C. The CRISPR-Cas toolbox and gene editing technologies. Mol Cell. 2022 Jan;82(2):333–347. https://doi.org/10.1016/j.molcel.2021.12.002 Liu G Lin Q Jin S Gao C. The CRISPR-Cas toolbox and gene editing technologies . Mol Cell . 2022 Jan ; 82 ( 2 ): 333 347 . https://doi.org/10.1016/j.molcel.2021.12.002 Search in Google Scholar

Lozano R, Naghavi M, Foreman K, Lim S, Shibuya K, Aboyans V, Abraham J, Adair T, Aggarwal R, Ahn SY et al. Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: A systematic analysis for the Global Burden of Disease Study 2010. Lancet. 2012 Dec;380(9859):2095–2128. https://doi.org/10.1016/s0140-6736(12)61728-0 Lozano R Naghavi M Foreman K Lim S Shibuya K Aboyans V Abraham J Adair T Aggarwal R Ahn SY Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: A systematic analysis for the Global Burden of Disease Study 2010 . Lancet . 2012 Dec ; 380 ( 9859 ): 2095 2128 . https://doi.org/10.1016/s0140-6736(12)61728-0 Search in Google Scholar

Ludwig-Begall LF, Mauroy A, Thiry E. Noroviruses – the state of the art, nearly fifty years after their initial discovery. Viruses. 2021 Aug;13(8):1541. https://doi.org/10.3390/v13081541 Ludwig-Begall LF Mauroy A Thiry E. Noroviruses – the state of the art, nearly fifty years after their initial discovery . Viruses . 2021 Aug ; 13 ( 8 ): 1541 . https://doi.org/10.3390/v13081541 Search in Google Scholar

Piepenburg O, Williams CH, Stemple DL, Armes NA. DNA detection using recombination proteins. PLoS Biol. 2006 Jul;4(7):e204. https://doi.org/10.1371/journal.pbio.0040204 Piepenburg O Williams CH Stemple DL Armes NA. DNA detection using recombination proteins . PLoS Biol . 2006 Jul ; 4 ( 7 ): e204 . https://doi.org/10.1371/journal.pbio.0040204 Search in Google Scholar

Pires SM, Fischer-Walker CL, Lanata CF, Devleesschauwer B, Hall AJ, Kirk MD, Duarte AS, Black RE, Angulo FJ. Aetiology-specific estimates of the global and regional incidence and mortality of diarrhoeal diseases commonly transmitted through food. PLoS One. 2015 Dec;10(12):e0142927. https://doi.org/10.1371/journal.pone.0142927 Pires SM Fischer-Walker CL Lanata CF Devleesschauwer B Hall AJ Kirk MD Duarte AS Black RE Angulo FJ. Aetiology-specific estimates of the global and regional incidence and mortality of diarrhoeal diseases commonly transmitted through food . PLoS One . 2015 Dec ; 10 ( 12 ): e0142927 . https://doi.org/10.1371/journal.pone.0142927 Search in Google Scholar

Qi Y, Dong X, Cheng X, Xu H, Wang J, Wang B, Chen Y, Sun B, Zhang L, Yao Y. Epidemiological characteristics of norovirus outbreaks in Shenyang from 2017 to 2021. J Microbiol. 2023 Apr; 61(4): 471–478. https://doi.org/10.1007/s12275-023-00033-9 Qi Y Dong X Cheng X Xu H Wang J Wang B Chen Y Sun B Zhang L Yao Y. Epidemiological characteristics of norovirus outbreaks in Shenyang from 2017 to 2021 . J Microbiol . 2023 Apr ; 61 ( 4 ): 471 478 . https://doi.org/10.1007/s12275-023-00033-9 Search in Google Scholar

Rupprom K, Chavalitshewinkoon-Petmitr P, Diraphat P, Kittigul L. Evaluation of real-time RT-PCR assays for detection and quantification of norovirus genogroups I and II. Virol Sin. 2017 Apr; 32(2):139–146. https://doi.org/10.1007/s12250-016-3863-9 Rupprom K Chavalitshewinkoon-Petmitr P Diraphat P Kittigul L. Evaluation of real-time RT-PCR assays for detection and quantification of norovirus genogroups I and II . Virol Sin . 2017 Apr ; 32 ( 2 ): 139 146 . https://doi.org/10.1007/s12250-016-3863-9 Search in Google Scholar

Shang X, Fu X, Zhang P, Sheng M, Song J, He F, Qiu Y, Wu H, Lu Q, Feng Y, et al. An outbreak of norovirus-associated acute gastroenteritis associated with contaminated barrelled water in many schools in Zhejiang, China. PLoS One. 2017 Feb;12(2):e0171307. https://doi.org/10.1371/journal.pone.0171307 Shang X Fu X Zhang P Sheng M Song J He F Qiu Y Wu H Lu Q Feng Y An outbreak of norovirus-associated acute gastroenteritis associated with contaminated barrelled water in many schools in Zhejiang, China . PLoS One . 2017 Feb ; 12 ( 2 ): e0171307 . https://doi.org/10.1371/journal.pone.0171307 Search in Google Scholar

Teunis PF, Moe CL, Liu P, Miller SE, Lindesmith L, Baric RS, Le Pendu J, Calderon RL. Norwalk virus: How infectious is it? J Med Virol. 2008 Aug;80(8):1468–1476. https://doi.org/10.1002/jmv.21237 Teunis PF Moe CL Liu P Miller SE Lindesmith L Baric RS Le Pendu J Calderon RL. Norwalk virus: How infectious is it? J Med Virol . 2008 Aug ; 80 ( 8 ): 1468 1476 . https://doi.org/10.1002/jmv.21237 Search in Google Scholar

Utagawa ET, Nakazawa E, Matsuo K, Oishi I, Takeda N, Miyamura T. Application of an automated specimen search system installed in a transmission electron microscope for the detection of caliciviruses in clinical specimens. J Virol Methods. 2002 Feb; 100(1–2):49–56. https://doi.org/10.1016/s0166-0934(01)00395-0 Utagawa ET Nakazawa E Matsuo K Oishi I Takeda N Miyamura T. Application of an automated specimen search system installed in a transmission electron microscope for the detection of caliciviruses in clinical specimens . J Virol Methods . 2002 Feb ; 100 ( 1–2 ): 49 56 . https://doi.org/10.1016/s0166-0934(01)00395-0 Search in Google Scholar

Vega E, Barclay L, Gregoricus N, Williams K, Lee D, Vinjé J. Novel surveillance network for norovirus gastroenteritis outbreaks, United States. Emerg Infect Dis. 2011 Aug;17(8):1389–1395. https://doi.org/10.3201/eid1708.101837 Vega E Barclay L Gregoricus N Williams K Lee D Vinjé J. Novel surveillance network for norovirus gastroenteritis outbreaks, United States . Emerg Infect Dis . 2011 Aug ; 17 ( 8 ): 1389 1395 . https://doi.org/10.3201/eid1708.101837 Search in Google Scholar

Vinjé J. Advances in laboratory methods for detection and typing of norovirus. J Clin Microbiol. 2015 Feb;53(2):373–381. https://doi.org/10.1128/jcm.01535-14 Vinjé J. Advances in laboratory methods for detection and typing of norovirus . J Clin Microbiol . 2015 Feb ; 53 ( 2 ): 373 381 . https://doi.org/10.1128/jcm.01535-14 Search in Google Scholar

Xu H, Tang H, Li R, Xia Z, Yang W, Zhu Y, Liu Z, Lu G, Ni S, Shen J. A new method based on LAMP-CRISPR-Cas12a-lateral flow immunochromatographic strip for detection. Infect Drug Resist. 2022 Feb;15:685–696. https://doi.org/10.2147/idr.S348456 Xu H Tang H Li R Xia Z Yang W Zhu Y Liu Z Lu G Ni S Shen J. A new method based on LAMP-CRISPR-Cas12a-lateral flow immunochromatographic strip for detection . Infect Drug Resist . 2022 Feb ; 15 : 685 696 . https://doi.org/10.2147/idr.S348456 Search in Google Scholar

Xue C, Pan L, Zhu W, Wang Y, Fu H, Cui C, Lu L, Qiao S, Xu B. Molecular epidemiology of genogroup II norovirus infections in acute gastroenteritis patients during 2014–2016 in Pudong New Area, Shanghai, China. Gut Pathog. 2018 Feb;10:7. https://doi.org/10.1186/s13099-018-0233-1 Xue C Pan L Zhu W Wang Y Fu H Cui C Lu L Qiao S Xu B. Molecular epidemiology of genogroup II norovirus infections in acute gastroenteritis patients during 2014–2016 in Pudong New Area, Shanghai, China . Gut Pathog . 2018 Feb ; 10 : 7 . https://doi.org/10.1186/s13099-018-0233-1 Search in Google Scholar

eISSN:
2544-4646
Idioma:
Inglés
Calendario de la edición:
4 veces al año
Temas de la revista:
Life Sciences, Microbiology and Virology