This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.
Afgan E., Baker D., van den Beek M., Blankenberg D., Bouvier D., Čech M., Chilton J., Clements D., Coraor N., Eberhard C., Grüning B., Guerler A., Hillman-Jackson J., Von Kuster G., Rasche E., Soranzo N., Turaga N., Taylor J., Nekrutenko A., Goecks J.: The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acid Res 2016, 44, 3–10, doi: 10.1093/nar/gkw343.AfganE.BakerD.van denBeek M.BlankenbergD.BouvierD.ČechM.ChiltonJ.ClementsD.CoraorN.EberhardC.GrüningB.GuerlerA.Hillman-JacksonJ.VonKuster G.RascheE.SoranzoN.TuragaN.TaylorJ.NekrutenkoA.GoecksJ.The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 updateNucleic Acid Res20164431010.1093/nar/gkw343498790627137889Open DOISearch in Google Scholar
Aschfalk A., Kemper N., Arnemo J.M., Veiberg V., Rosef O., Neubauer H.: Prevalence of Yersinia species in healty free-ranging red deer (Cervus elaphus) in Norway. Vet Rec 2008 163, 27–28, doi: 10.1136/vr.163.1.27.AschfalkA.KemperN.ArnemoJ.M.VeibergV.RosefO.NeubauerH.Prevalence of Yersinia species in healty free-ranging red deer (Cervus elaphus) in NorwayVet Rec200816327–2810.1136/vr.163.1.2718603633Open DOISearch in Google Scholar
Bancerz-Kisiel A., Pieczywek M., Łada P., Szweda W.: The most important virulence markers of Yersinia enterocolitica and their role during infection. Genes 2018, 9, 235, doi: 10.3390/genes9050235.Bancerz-KisielA.PieczywekM.ŁadaP.SzwedaW.The most important virulence markers of Yersinia enterocolitica and their role during infectionGenes2018923510.3390/genes9050235597717529751540Open DOISearch in Google Scholar
Bancerz-Kisiel A., Platt-Samoraj A., Szczerba-Turek A., Syczyło K., Szweda W.: The first pathogenic Yersinia enterocolitica bioserotype 4/O:3 strain isolated from a hunted wild boar (Sus Scrofa) in Poland. Epidemiol Infect 2015, 143, 2758–2765, doi:10.1017/S0950268814003872.Bancerz-KisielA.Platt-SamorajA.Szczerba-TurekA.SyczyłoK.SzwedaW.The first pathogenic Yersinia enterocolitica bioserotype 4/O:3 strain isolated from a hunted wild boar (Sus Scrofa) in PolandEpidemiol Infect20151432758–276510.1017/S095026881400387225608621Open DOISearch in Google Scholar
Bancerz-Kisiel A., Szczerba-Turek A., Platt-Samoraj A., Socha P., Szweda W.: Bioserotypes and virulence markers of Y. enterocolitica strains isolated from roe deer (Capreolus capreolus) and red deer (Cervus elaphus). Pol J Vet Sci 2014, 17, 315–319, doi: 10.2478/pjvs-2014-0043.Bancerz-KisielA.Szczerba-TurekA.Platt-SamorajA.SochaP.SzwedaW.Bioserotypes and virulence markers of Yenterocolitica strains isolated from roe deer (Capreolus capreolus) and red deer (Cervus elaphus). Pol J Vet Sci20141731531910.2478/pjvs-2014-004324988858Open DOISearch in Google Scholar
Bolger A.M., Lohse M., Usadel B.: Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 2014, 30, 2114–2120, doi: 10.1093/bioinformatics/btu170.BolgerA.M.LohseM.UsadelB.Trimmomatic: a flexible trimmer for Illumina sequence dataBioinformatics2014302114212010.1093/bioinformatics/btu170410359024695404Open DOISearch in Google Scholar
Bortolaia V., Kaas R., Ruppe E., Roberts M.C., Schwarz S., Cattoir V., Philippon A., Allesoel R.L., Rebelo A.R., Florensa A.F., Fagelhauer L., Chakraborty T., Neumann B., Werner G., Bender J.K., Stingl K., Nguyen M., Coppens J., Xavier B.B., Malhotra-Kumar S., Westh H., Pinholt M., Anijum M.F., Duggett N.A., Kempf I., Nykäsenoja S., Olkkola S., Wieczorek K., Amaro A., Clemente L., Mosssong J., Losch S., Ragimbeau C., Lund O., Møller Aarestrup F.: ResFinder 4.0 for predictions of phenotypes from genotypes. J Antimicrob Chemother 2020, 75, 3491–3500, doi: 10.1093/jac/dkaa345.BortolaiaV.KaasR.RuppeE.RobertsM.C.SchwarzS.CattoirV.PhilipponA.AllesoelR.L.RebeloA.R.FlorensaA.F.FagelhauerL.ChakrabortyT.NeumannB.WernerG.BenderJ.K.StinglK.NguyenM.CoppensJ.XavierB.B.Malhotra-KumarS.WesthH.PinholtM.AnijumM.F.DuggettN.A.KempfI.NykäsenojaS.OlkkolaS.WieczorekK.AmaroA.ClementeL.MosssongJ.LoschS.RagimbeauC.LundO.MøllerAarestrup F.ResFinder 4.0 for predictions of phenotypes from genotypesJ Antimicrob Chemother2020753491350010.1093/jac/dkaa345766217632780112Open DOISearch in Google Scholar
Bottone E.J.: Yersinia enterocolitica: Revisitation of an Enduring Human Pathogen. Clin Microbiol Newsl 2015, 37, 1–8, doi: 10.1016/j.clinmicnews.2014.12.003.BottoneE.J.Yersinia enterocolitica: Revisitation of an Enduring Human PathogenClin Microbiol Newsl2015371810.1016/j.clinmicnews.2014.12.003Open DOISearch in Google Scholar
Bucher M., Meyer C., Grötzbach B., Wacheck S., Stolle A., Fredriksson-Ahomaa M.: Epidemiological data on pathogenic Yersinia enterocolitica in Southern Germany during 2000-2006. Foodborne Pathog Dis 2008, 5, 273–280, doi: 10.1089/fpd.2007.0076.BucherM.MeyerC.GrötzbachB.WacheckS.StolleA.Fredriksson-AhomaaM.Epidemiological data on pathogenic Yersinia enterocolitica in Southern Germany during 2000-2006Foodborne Pathog Dis2008527328010.1089/fpd.2007.007618564908Open DOISearch in Google Scholar
Carattoli A., Zankari E., García-Fernández A., Voldby Larsen M., Lund O., Villa L., Møller Aarestrup F., Hasman H.: In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing. Antimicrob Agents Chemother 2014, 58, 3895–3903, doi: 10.1128/AAC.02412-14.CarattoliA.ZankariE.García-FernándezA.VoldbyLarsen M.LundO.VillaL.MøllerAarestrup F.HasmanH.In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence TypingAntimicrob Agents Chemother2014583895390310.1128/AAC.02412-14406853524777092Open DOISearch in Google Scholar
Clausen P.T.L.C., Møller Aarestrup F., Lund O.: Rapid and precise alignment of raw reads against redundant databases with KMA. BMC Bioinformatics 2018, 19, 307, doi: 10.1186/s12859-018-2336-6.ClausenP.T.L.C.MøllerAarestrup F.LundO.Rapid and precise alignment of raw reads against redundant databases with KMABMC Bioinformatics20181930710.1186/s12859-018-2336-6611648530157759Open DOISearch in Google Scholar
European Food Safety Authority, European Centre for Disease Prevention and Control: The European Union One Health 2019 Zoonoses Report. EFSA Journal 2021, 19, 2, e06406, doi: 10.2903/j.efsa.2021.6406.European Food Safety Authority, European Centre for Disease Prevention and ControlThe European Union One Health 2019 Zoonoses ReportEFSA Journal2021192e0640610.2903/j.efsa.2021.6406791330033680134Open DOISearch in Google Scholar
Falcão J.P., Falcão D.P., Pitondo-Silva A., Malaspina A.C., Brocchi M.: Molecular typing and virulence markers of Yersinia enterocolitica strains from human, animal and food origins isolated between 1968 and 2000 in Brazil. 2006, J Med Microbiol 2006, 55, 1539–1548, doi: 10.1099/jmm.0.46733-0.FalcãoJ.P.FalcãoD.P.Pitondo-SilvaA.MalaspinaA.C.BrocchiM.Molecular typing and virulence markers of Yersinia enterocolitica strains from human, animal and food origins isolated between 1968 and 2000 in Brazil2006, J Med Microbiol2006551539154810.1099/jmm.0.46733-017030914Open DOISearch in Google Scholar
Fredriksson-Ahomaa M., Stolle A., Stephan R.: Prevalence of pathogenic Yersinia enterocolitica in pigs slaughtered at a Swiss abattoir. Int J Food Microbiol 2007, 119, 207–212, doi: 10.1016/j.ifoodmicro.2007.07.050.Fredriksson-AhomaaM.StolleA.StephanR.Prevalence of pathogenic Yersinia enterocolitica in pigs slaughtered at a Swiss abattoirInt J Food Microbiol200711920721210.1016/j.ifoodmicro.2007.07.050Open DOISearch in Google Scholar
Fredriksson-Ahomaa M., Wacheck S., Bonke R., Stephan R.: Different Enteropathogenic Yersinia strains found in wild boars and domestic pigs. Foodborne Pathog Dis 2011, 8, 733–737, doi: 10.1089/fpd.2010.0711.Fredriksson-AhomaaM.WacheckS.BonkeR.StephanR.Different Enteropathogenic Yersinia strains found in wild boars and domestic pigsFoodborne Pathog Dis2011873373710.1089/fpd.2010.071121288132Open DOISearch in Google Scholar
Grant T., Bennet-Wood V., Robins-Browne R.M.: Characterization of the interaction between Yersinia enterocolitica biotype 1A and the phagocytes and epithelial cells in vitro. Infect Immun 1999, 67, 4367–4375, doi: 10.1128/IAI.67.9.4367-4375.1999.GrantT.Bennet-WoodV.Robins-BrowneR.M.Characterization of the interaction between Yersinia enterocolitica biotype 1A and the phagocytes and epithelial cells in vitroInfect Immun1999674367437510.1128/IAI.67.9.4367-4375.19999675410456876Open DOISearch in Google Scholar
Grimstrup Joensen K., Scheutz F., Lund O., Hasman H., Kaas R.S., Nielsen E.M., Møller Aarestrup F.: Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli. J Clin Microbiol 2014, 52, 1501–1510, doi: 10.1128/JCM.03617-13.GrimstrupJoensen K.ScheutzF.LundO.HasmanH.KaasR.S.NielsenE.M.MøllerAarestrup F.Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coliJ Clin Microbiol2014521501151010.1128/JCM.03617-13399369024574290Open DOISearch in Google Scholar
Hammerl J.A., Freytag B., Lanka E., Appel B., Hertwig S.: The pYV virulence plasmids of Yersinia pseudotuberculosis and Y. pestis contain a conserved DNA region responsible for the mobilization by the self-transmissible plasmid pYE854. Environ Microbiol Rep 2012, 4, 433–438, doi: 10.1111/j.1758-2229.2012.00353.x.HammerlJ.A.FreytagB.LankaE.AppelB.HertwigS.The pYV virulence plasmids of Yersinia pseudotuberculosis and Ypestis contain a conserved DNA region responsible for the mobilization by the self-transmissible plasmid pYE854. Environ Microbiol Rep2012443343810.1111/j.1758-2229.2012.00353.x23760829Open DOISearch in Google Scholar
Hammerl J.A., Klein I., Lanka E., Appel B., Hertwig S.: Genetic and Functional Properties of the Self-Transmissible Yersinia enterocolitica Plasmid pYE854, Which Mobilizes the Virulence Plasmid pYV. J Bacteriol 2008, 190, 991–1010, doi: 10.1128/JB.01467-07.HammerlJ.A.KleinI.LankaE.AppelB.HertwigS.Genetic and Functional Properties of the Self-Transmissible Yersinia enterocolitica Plasmid pYE854, Which Mobilizes the Virulence Plasmid pYVJ Bacteriol2008190991101010.1128/JB.01467-07222358118055592Open DOISearch in Google Scholar
Joutsen S., Sarno E., Fredriksson-Ahmoaa M., Cernela N., Stephan R.: Pathogenic Yersinia enterocolitica O:3 isolated from a hunted wild alpine ibex. Epidemiol Infect 2013, 141, 612–617, doi:10.1017/S0950268812001239.JoutsenS.SarnoE.Fredriksson-AhmoaaM.CernelaN.StephanR.Pathogenic Yersinia enterocolitica O3 isolated from a hunted wild alpine ibexEpidemiol Infect2013141612–61710.1017/S095026881200123922697252Open DOISearch in Google Scholar
Livermore D.M., Winstanley T.G., Shannon K.P.:, Interpretative reading: recognizing the unusual and inferring resistance mechanisms from resistance phenotypes. J Antimicrob Chemother 2001, 48, 87–102, doi: 10.1093/jac/48.suppl_1.87.LivermoreD.M.WinstanleyT.G.ShannonK.P.Interpretative reading: recognizing the unusual and inferring resistance mechanisms from resistance phenotypesJ Antimicrob Chemother2001488710210.1093/jac/48.suppl_1.87Open DOISearch in Google Scholar
Modesto P., De Ciucis C.G., Vencia W., Pugliano M.C., Mignone W., Berio E., Masotti C., Ercolini C., Serracca L., Andreoli T., Dellepiane M., Adriano D., Zoppi S., Meloni D., Razzuoli E.: Evidence of Antimicrobial Resistance and Presence of Pathogenicity Genes in Yersinia enterocolitica Isolate from Wild Boars. Pathogens 2021, 10, 398, doi: 10.3390/pathogens10040398.ModestoP.De CiucisC.G.VenciaW.PuglianoM.C.MignoneW.BerioE.MasottiC.ErcoliniC.SerraccaL.AndreoliT.DellepianeM.AdrianoD.ZoppiS.MeloniD.RazzuoliE.Evidence of Antimicrobial Resistance and Presence of Pathogenicity Genes in Yersinia enterocolitica Isolate from Wild BoarsPathogens20211039810.3390/pathogens10040398Open DOISearch in Google Scholar
Nikolova S., Tzvetkov Y., Najdenski H., Vesselinova A.:, Isolation of pathogenic yersiniae from wild animals in Bulgaria. J Vet Med B Infect Dis Vet Public Health 2001, 48, 203–209, doi: 10.1046/j.1439-0450.2001.00448.x.NikolovaS.TzvetkovY.NajdenskiH.VesselinovaA.Isolation of pathogenic yersiniae from wild animals in BulgariaJ Vet Med B Infect Dis Vet Public Health20014820320910.1046/j.1439-0450.2001.00448.xOpen DOISearch in Google Scholar
Nowakiewicz A., Zięba P., Ziółkowska G., Gnat S., Muszyńska M., Tomczuk K., Dziedzic B.M., Ulbrych Ł., Trościańczyk A.: Free-Living Species of Carnivorous Mammals in Poland: Red Fox, Beech Marten, and Raccoon as a Potential Reservoir of SalmonellaYersiniaListeria spp. and Coagulase-Positive Staphylococcus. PLoS One 2016, 11, e0155533, doi: 10.1371/journal.pone.0155533.NowakiewiczA.ZiębaP.ZiółkowskaG.GnatS.MuszyńskaM.TomczukK.DziedzicB.M.UlbrychŁ.TrościańczykA.Free-Living Species of Carnivorous Mammals in Poland: Red Fox, Beech Marten, and Raccoon as a Potential Reservoir of Salmonella Yersinia Listeria sppand Coagulase-Positive Staphylococcus. PLoS One201611e015553310.1371/journal.pone.0155533Open DOISearch in Google Scholar
Sacchini L., Garofalo G., Di Serafino G., Marotta F., Ricci L., Di Donato G., Miracco M.G., Perletta F., Di Giannatale E.: The prevalence, characterisation and antimicrobial resistance of Yersinia enterocolitica in pigs from central Italy. Vet Ital 2018, 54, 115–123, doi: 10.12834/VetIt.1126.6109.2.SacchiniL.GarofaloG.DiSerafino G.MarottaF.RicciL.DiDonato G.MiraccoM.G.PerlettaF.DiGiannatale E.The prevalence, characterisation and antimicrobial resistance of Yersinia enterocolitica in pigs from central ItalyVet Ital20185411512310.12834/VetIt.1126.6109.2Open DOISearch in Google Scholar
Seoane A., Garcia Lobo J.M.: Identification of a Streptogramin A Acetyltransferase Gene in the Chromosome of Yersinia enterocolitica. Antimicrob Agents Chemother 2000, 44, 905–909, doi: 10.1128/aac.44.4.905-909.2000.SeoaneA.GarciaLobo J.M.Identification of a Streptogramin A Acetyltransferase Gene in the Chromosome of Yersinia enterocoliticaAntimicrob Agents Chemother20004490590910.1128/aac.44.4.905-909.2000Open DOISearch in Google Scholar
Singh I., Virdi J.S.: Production of Yersinia stable toxin (YST) and distribution of yst genes in biotype 1A strains of Yersinia enterocolitica. J Med Microbiol 2004, 53, 1065–1068, doi: 10.1099/jmm.0.45527-0.SinghI.VirdiJ.S.Production of Yersinia stable toxin (YST) and distribution of yst genes in biotype 1A strains of Yersinia enterocoliticaJ Med Microbiol2004531065106810.1099/jmm.0.45527-0Open DOISearch in Google Scholar
Stojilikovic I., Hantke K.: Hemin uptake system of Yersinia enterocolitica: similarities with other TonB-dependent systems in gram-negative bacteria. EMBO J 1992, 11, 4359–4367.StojilikovicI.HantkeK.Hemin uptake system of Yersinia enterocolitica: similarities with other TonB-dependent systems in gram-negative bacteriaEMBO J1992114359436710.1002/j.1460-2075.1992.tb05535.xSearch in Google Scholar
Syczylo K., Platt-Samoraj A., Bancerz-Kisiel A., Szczerba-Turek A., Pajdak-Czaus J., Labuć S., Procajło Z., Socha P., Chuzhebayeva G., Szweda W.: The prevalence of Yersinia enterocolitica in game animals in Poland. PLoS One 2018, 13, e0195136, doi: 10.1371/journal.pone.0195136.SyczyloK.Platt-SamorajA.Bancerz-KisielA.Szczerba-TurekA.Pajdak-CzausJ.LabućS.ProcajłoZ.SochaP.ChuzhebayevaG.SzwedaW.The prevalence of Yersinia enterocolitica in game animals in PolandPLoS One201813e019513610.1371/journal.pone.0195136Open DOISearch in Google Scholar
Tennant S.M., Grant T.H., Robins-Browne R.M.: Pathogenicity of Yersinia enterocolitica biotype 1A. FEMS Immunol Med Microbiol 2003, 38, 127–137, doi: 10.1016/S0928-8244(03)00180-9.TennantS.M.GrantT.H.Robins-BrowneR.M.Pathogenicity of Yersinia enterocolitica biotype 1AFEMS Immunol Med Microbiol20033812713710.1016/S0928-8244(03)00180-9Open DOISearch in Google Scholar
Thisted Lambertz S., Nilsson C., Hallanvuo S., Lindblad M.: Real-time PCR method for detection of pathogenic Yersinia enterocolitica in food. Appl Environ Microbiol 2008, 74, 6060–6067, doi: 10.1128/AEM.00405-08.ThistedLambertz S.NilssonC.HallanvuoS.LindbladM.Real-time PCR method for detection of pathogenic Yersinia enterocolitica in foodAppl Environ Microbiol2008746060606710.1128/AEM.00405-08256596518708521Open DOISearch in Google Scholar
von Altrock A., Seinige D., Kehrenberg C.: Yersinia enterocolitica isolates from wild boars hunted in lower Saxony, Germany. Appl Environ Microbiol 2015, 81, 4835–4840, doi: 10.1128/AEM.00550-15.vonAltrock A.SeinigeD.KehrenbergC.Yersinia enterocolitica isolates from wild boars hunted in lower Saxony, GermanyAppl Environ Microbiol2015814835484010.1128/AEM.00550-15455117825956779Open DOISearch in Google Scholar
Zhou Z., Alikhan N.F., Mohamed K., the Agama Study Group, Achtman M.: The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny and Escherichia core genomic diversity. Genome Res. 2020, 30, 138–152, doi: 10.1101/gr.251678.119.ZhouZ.AlikhanN.F.MohamedK.the AgamaStudy GroupAchtmanM.The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny and Escherichia core genomic diversityGenome Res20203013815210.1101/gr.251678.119696158431809257Open DOISearch in Google Scholar
Zhou Z., Alikhan N.-F., Sergeant M.J., Luhmann N., Vaz C., Francisco A.P., Carriço J.A., Achtman M.: GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Res 2018, 28, 1395–1404, doi: 10.1101/gr.232397.117.ZhouZ.AlikhanN.-F.SergeantM.J.LuhmannN.VazC.FranciscoA.P.CarriçoJ.A.AchtmanM.GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogensGenome Res2018281395140410.1101/gr.232397.117612063330049790Open DOISearch in Google Scholar