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Bacterial Diversity in Roots, Stems, and Leaves of Chinese Medicinal Plant Paris polyphylla var. yunnanensis

TIAN-HAO LIU

TIAN-HAO LIU

  • Yunnan Key Laboratory of Molecular Biology of Chinese Medicine, Faculty of Basic Medical Science, Yunnan University of Chinese MedicineKunming, Yunnan, China
  • College of Chinese Medicine, Jinan UniversityGuangzhou, Guangdong, China
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LIU, TIAN-HAO
, 
YIN ZHOU

YIN ZHOU

Yunnan Key Laboratory of Molecular Biology of Chinese Medicine, Faculty of Basic Medical Science, Yunnan University of Chinese MedicineKunming, Yunnan, China
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ZHOU, YIN
, 
WEN-CONG TAO

WEN-CONG TAO

College of Chinese Medicine, Jinan UniversityGuangzhou, Guangdong, China
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TAO, WEN-CONG
, 
YANG LIU

YANG LIU

Yunnan Key Laboratory of Molecular Biology of Chinese Medicine, Faculty of Basic Medical Science, Yunnan University of Chinese MedicineKunming, Yunnan, China
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LIU, YANG
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XIAO-MEI ZHANG

XIAO-MEI ZHANG

Yunnan Key Laboratory of Molecular Biology of Chinese Medicine, Faculty of Basic Medical Science, Yunnan University of Chinese MedicineKunming, Yunnan, China
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ZHANG, XIAO-MEI
 and 
SHOU-ZHENG TIAN

SHOU-ZHENG TIAN

Yunnan Key Laboratory of Molecular Biology of Chinese Medicine, Faculty of Basic Medical Science, Yunnan University of Chinese MedicineKunming, Yunnan, China
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TIAN, SHOU-ZHENG
  
Mar 11, 2020
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Article Category: original-paper
Published Online: Mar 11, 2020
Page range: 91 - 97
Received: Oct 09, 2019
Accepted: Feb 13, 2020
DOI: https://doi.org/10.33073/pjm-2020-012
Keywords
© 2020 Tian-Hao Liu et al., published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

Fig. 1.

OTU relative abundances of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
OTU relative abundances of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 2.

Chao index of OTU level of roots, stems, and leaves (mean ± SD) (n = 6). S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **, p ≤ 0.001 marked as ***).
Chao index of OTU level of roots, stems, and leaves (mean ± SD) (n = 6). S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **, p ≤ 0.001 marked as ***).

Fig. 3.

Shannon index of OTU level of roots, stems, and leaves (mean ± SD) (n = 6). S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **, p ≤ 0.001 marked as ***).
Shannon index of OTU level of roots, stems, and leaves (mean ± SD) (n = 6). S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **, p ≤ 0.001 marked as ***).

Fig. 4.

PCA of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
PCA of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 5.

Percent of community abundance on the phylum level of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
Percent of community abundance on the phylum level of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 6.

Percent of community abundance on Genus level of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
Percent of community abundance on Genus level of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 7.

Functional relative abundance of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
Functional relative abundance of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 8.

Significantly relative abundance of roots, stems, and leaves (mean ± SD) (n = 6). A: enriched in extracellular structures. B: enriched in the cytoskeleton. S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **).
Significantly relative abundance of roots, stems, and leaves (mean ± SD) (n = 6). A: enriched in extracellular structures. B: enriched in the cytoskeleton. S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **).

Microbial diversity indices in roots, stems, and leaves (mean ± SD) (n = 6)_

Index Mean ± SD (R) Mean ± SD (S) Mean ± SD (L) p-value (R-S) p-value (L-S) p-value (L-R)
Shannon 2.66 ± 0.72 1.55 ± 0.58 0.72 ± 0.28 1.51E-02 1.07E-02 1.10E-04
Chao1 614.36 ± 44.24 467.46 ± 111.12 386.30 ± 66.16 1.32E-02 1.55E-01 3.63E-05
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