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Bacterial Diversity in Roots, Stems, and Leaves of Chinese Medicinal Plant Paris polyphylla var. yunnanensis

TIAN-HAO LIU
TIAN-HAO LIU
, 
YIN ZHOU
YIN ZHOU
, 
WEN-CONG TAO
WEN-CONG TAO
, 
YANG LIU
YANG LIU
, 
XIAO-MEI ZHANG
XIAO-MEI ZHANG
 e 
SHOU-ZHENG TIAN
SHOU-ZHENG TIAN
   | 11 mar 2020
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Article Category: original-paper
Pubblicato online: 11 mar 2020
Pagine: 91 - 97
Ricevuto: 09 ott 2019
Accettato: 13 feb 2020
DOI: https://doi.org/10.33073/pjm-2020-012
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© 2020 Tian-Hao Liu et al., published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

Fig. 1.

OTU relative abundances of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
OTU relative abundances of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 2.

Chao index of OTU level of roots, stems, and leaves (mean ± SD) (n = 6). S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **, p ≤ 0.001 marked as ***).
Chao index of OTU level of roots, stems, and leaves (mean ± SD) (n = 6). S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **, p ≤ 0.001 marked as ***).

Fig. 3.

Shannon index of OTU level of roots, stems, and leaves (mean ± SD) (n = 6). S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **, p ≤ 0.001 marked as ***).
Shannon index of OTU level of roots, stems, and leaves (mean ± SD) (n = 6). S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **, p ≤ 0.001 marked as ***).

Fig. 4.

PCA of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
PCA of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 5.

Percent of community abundance on the phylum level of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
Percent of community abundance on the phylum level of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 6.

Percent of community abundance on Genus level of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
Percent of community abundance on Genus level of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 7.

Functional relative abundance of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.
Functional relative abundance of roots, stems, and leaves (n = 6). S represents stems, R represents root, and L represents leaf.

Fig. 8.

Significantly relative abundance of roots, stems, and leaves (mean ± SD) (n = 6). A: enriched in extracellular structures. B: enriched in the cytoskeleton. S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **).
Significantly relative abundance of roots, stems, and leaves (mean ± SD) (n = 6). A: enriched in extracellular structures. B: enriched in the cytoskeleton. S represents stems, R represents root, and L represents leaf. (0.01 < p ≤ 0.05 marked as *, 0.001 < p ≤ 0.01 marked as **).

Microbial diversity indices in roots, stems, and leaves (mean ± SD) (n = 6).

Index Mean ± SD (R) Mean ± SD (S) Mean ± SD (L) p-value (R-S) p-value (L-S) p-value (L-R)
Shannon 2.66 ± 0.72 1.55 ± 0.58 0.72 ± 0.28 1.51E-02 1.07E-02 1.10E-04
Chao1 614.36 ± 44.24 467.46 ± 111.12 386.30 ± 66.16 1.32E-02 1.55E-01 3.63E-05
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Life Sciences, Microbiology and Virology
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