This work is licensed under the Creative Commons Attribution 4.0 International License.
Baermann, G. 1917. Eine einfache Methode zur Auffindung von Ankylostomum (Nematoden) larven in Erdproben. Geneeskd Tijdschr Voor Ned Indië 57:131–137.BaermannG.1917Eine einfache Methode zur Auffindung von Ankylostomum (Nematoden) larven in Erdproben57131137Search in Google Scholar
Bik, H. M., Fournier, D., Sung, W., Bergeron, R. D., and Thomas, W. K. 2013. Intra-genomic variation in the ribosomal repeats of nematodes. PLoS One 8:e78230.BikH. M.FournierD.SungW.BergeronR. D.ThomasW. K.2013Intra-genomic variation in the ribosomal repeats of nematodes8e78230Search in Google Scholar
Birnby, D. A., Link, E. M., Vowels, J. J., Tian, H., Colacurcio, P. L., and Thomas, J. H. 2000. A transmembrane guanylyl cyclase (DAF-11) and Hsp90 (DAF-21) regulate a common set of chemosensory behaviors in Caenorhabditis elegans. Genetics 155:85–104.BirnbyD. A.LinkE. M.VowelsJ. J.TianH.ColacurcioP. L.ThomasJ. H.2000A transmembrane guanylyl cyclase (DAF-11) and Hsp90 (DAF-21) regulate a common set of chemosensory behaviors in Caenorhabditis elegans15585104Search in Google Scholar
Blok, V. C., Malloch, G., Harrower, B., Phillips, M. S., and Vrain, T. C. 1998. Intraspecific variation in ribosomal DNA in populations of the potato cyst nematode Globodera pallida. Journal of Nematology 30:262–274.BlokV. C.MallochG.HarrowerB.PhillipsM. S.VrainT. C.1998Intraspecific variation in ribosomal DNA in populations of the potato cyst nematode Globodera pallida30262274Search in Google Scholar
Braun-Kiewnick, A., and Kiewnick, S. 2018. Real-time PCR, a great tool for fast identification, sensitive detection and quantification of important plant-parasitic nematodes. European Journal of Plant Pathology 152:271–283.Braun-KiewnickA.KiewnickS.2018Real-time PCR, a great tool for fast identification, sensitive detection and quantification of important plant-parasitic nematodes152271283Search in Google Scholar
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., and Madden, T. L. 2009. BLAST+: Architecture and applications. BMC Bioinformatics 10:421.CamachoC.CoulourisG.AvagyanV.MaN.PapadopoulosJ.BealerK.MaddenT. L.2009BLAST+: Architecture and applications10421Search in Google Scholar
Chizhov, V. N., Borisov, B. A., and Subbotin, S. A. 2010. A new stem nematode, Ditylenchus weischeri sp. n. (Nematoda: Tylenchida), a parasite of Cirsium arvense (L.) Scop. in the central region of the non-chernozem zone of Russia. Russian Journal of Nematology 18:95–102.ChizhovV. N.BorisovB. A.SubbotinS. A.2010A new stem nematode, Ditylenchus weischeri sp. n. (Nematoda: Tylenchida), a parasite of Cirsium arvense (L.) Scop. in the central region of the non-chernozem zone of Russia1895102Search in Google Scholar
Deych, K. O., Pridannikov, M. V., Nikitin, M. M., Statsyuk, N. V., Dzhavakhiya, V. G., and Golikov, A. G. 2018. Simultaneous detection of three plant-parasitic nematode species from the genus Ditylenchus using a real-time qPCR matrix-based technology. Russian Journal of Nematology 26:97–107.DeychK. O.PridannikovM. V.NikitinM. M.StatsyukN. V.DzhavakhiyaV. G.GolikovA. G.2018Simultaneous detection of three plant-parasitic nematode species from the genus Ditylenchus using a real-time qPCR matrix-based technology2697107Search in Google Scholar
Edgar, R. C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792–1797.EdgarR. C.2004MUSCLE: Multiple sequence alignment with high accuracy and high throughput3217921797Search in Google Scholar
Emms, D. M., and Kelly, S. 2019. OrthoFinder: Phylogenetic orthology inference for comparative genomics. Genome Biology 20:1–14.EmmsD. M.KellyS.2019OrthoFinder: Phylogenetic orthology inference for comparative genomics20114Search in Google Scholar
EPPO (European and Mediterranean Plant Protection Organization). 2017. PM 7/87 (2) Ditylenchus destructor and Ditylenchus dipsaci. EPPO Bulletin 47:401–419.EPPO (European and Mediterranean Plant Protection Organization)2017PM 7/87 (2)47401419Search in Google Scholar
Fanelli, E., Troccoli, A., Capriglia, F., Lucarelli, G., Vovlas, N., Greco, N., and De Luca, F. 2018. Sequence variation in ribosomal DNA and in the nuclear Hsp90 gene of Pratylenchus penetrans (Nematoda: Pratylenchidae) populations and phylogenetic analysis. European Journal of Plant Pathology 152:355–365.FanelliE.TroccoliA.CaprigliaF.LucarelliG.VovlasN.GrecoN.De LucaF.2018Sequence variation in ribosomal DNA and in the nuclear Hsp90 gene of Pratylenchus penetrans (Nematoda: Pratylenchidae) populations and phylogenetic analysis152355365Search in Google Scholar
Francois, C., Castagnone, C., Boonham, N., Tomlinson, J., Lawson, R., Hockland, S., Quill, J., Vieira, P., Mota, M., and Castagnone-Sereno, P. 2007. Satellite DNA as a target for TaqMan real-time PCR detection of the pinewood nematode, Bursaphelenchus xylophilus. Molecular Plant Pathology 8:803–809.FrancoisC.CastagnoneC.BoonhamN.TomlinsonJ.LawsonR.HocklandS.QuillJ.VieiraP.MotaM.Castagnone-SerenoP.2007Satellite DNA as a target for TaqMan real-time PCR detection of the pinewood nematode, Bursaphelenchus xylophilus8803809Search in Google Scholar
Gouvea Pereira, F. 2018. Survey of plant-parasitic nematodes in pulse crop fields of the Canadian Prairies. Ph.D. dissertation, University of Manitoba, Winnipeg.Gouvea PereiraF.2018Ph.D. dissertationUniversity of ManitobaWinnipegSearch in Google Scholar
Gurevich, A., Saveliev, V., Vyahhi, N., and Tesler, G. 2013. QUAST: Quality assessment tool for genome assemblies. Bioinformatics 29:1072–1075.GurevichA.SavelievV.VyahhiN.TeslerG.2013QUAST: Quality assessment tool for genome assemblies2910721075Search in Google Scholar
Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B., Lieber, M., MacManes, M. D., Ott, M., Orvis, J., Pochet, N., Strozzi, F., Weeks, N., Westerman, R., William, T., Dewey, C. N., Henschel, R., LeDuc, R. D., Friedman, N., and Regev, A. 2013. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nature Protocols 8:1494–1512.HaasB. J.PapanicolaouA.YassourM.GrabherrM.BloodP. D.BowdenJ.CougerM. B.EcclesD.LiB.LieberM.MacManesM. D.OttM.OrvisJ.PochetN.StrozziF.WeeksN.WestermanR.WilliamT.DeweyC. N.HenschelR.LeDucR. D.FriedmanN.RegevA.2013De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis814941512Search in Google Scholar
Hajihassani, A., Tenuta, M., and Gulden, R. H. 2016. Host preference and seedborne transmission of Ditylenchus weischeri and D. dipsaci on select pulse and non-pulse crops grown in the Canadian Prairies. Plant Disease 100:1087–1092.HajihassaniA.TenutaM.GuldenR. H.2016Host preference and seedborne transmission of Ditylenchus weischeri and D. dipsaci on select pulse and non-pulse crops grown in the Canadian Prairies10010871092Search in Google Scholar
Hajihassani, A., Tenuta, M., and Gulden, R. H. 2017a. Influence of temperature on development and reproduction of Ditylenchus weischeri and D. dipsaci on yellow pea. Plant Disease 101:297–305.HajihassaniA.TenutaM.GuldenR. H.2017aInfluence of temperature on development and reproduction of Ditylenchus weischeri and D. dipsaci on yellow pea101297305Search in Google Scholar
Hajihassani, A., Tenuta, M., and Gulden, R. H. 2017b. Monoxenic rearing of Ditylenchus weischeri and D. dipsaci and microplot examination of the host suitability of yellow pea to D. weischeri. Plant Protection Science 53:254–264.HajihassaniA.TenutaM.GuldenR. H.2017bMonoxenic rearing of Ditylenchus weischeri and D. dipsaci and microplot examination of the host suitability of yellow pea to D. weischeri.53254264Search in Google Scholar
IPCC (International Plant Protection Convention). 2016. Ditylenchus destructor and Ditylenchus dipsaci. Annex 8 to ISPM 27 Diagnostic protocols for regulated pests.IPCC (International Plant Protection Convention)2016Search in Google Scholar
Jeszke, A., Dobosz, R., and Obrępalska-Stęplowska, A. 2015. A fast and sensitive method for the simultaneous identification of three important nematode species of the genus Ditylenchus. Pest Management Science 71:243–249.JeszkeA.DoboszR.Obrępalska-StęplowskaA.2015A fast and sensitive method for the simultaneous identification of three important nematode species of the genus Ditylenchus71243249Search in Google Scholar
Kiewnick, S., Frey, J. E., and Braun-Kiewnick, A. 2015. Development and validation of LNA-based quantitative real-time PCR assays for detection and identification of the root-knot nematode Meloidogyne enterolobii in complex DNA backgrounds. Phytopathology 105:1245– 1249.KiewnickS.FreyJ. E.Braun-KiewnickA.2015Development and validation of LNA-based quantitative real-time PCR assays for detection and identification of the root-knot nematode Meloidogyne enterolobii in complex DNA backgrounds10512451249Search in Google Scholar
Koren, S., Walenz, B. P., Berlin, K., Miller, J. R., Bergman, N. H., and Phillippy, A. M. 2017. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Research 27:722–736.KorenS.WalenzB. P.BerlinK.MillerJ. R.BergmanN. H.PhillippyA. M.2017Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation27722736Search in Google Scholar
Kumari, S., and Subbotin, S. A. 2012. Molecular characterization and diagnostics of stubby root and virus vector nematodes of the family Trichodoridae (Nematoda: Triplonchida) using ribosomal RNA genes. Plant Pathology 61:1021–1031.KumariS.SubbotinS. A.2012Molecular characterization and diagnostics of stubby root and virus vector nematodes of the family Trichodoridae (Nematoda: Triplonchida) using ribosomal RNA genes6110211031Search in Google Scholar
Li, H., and Durbin, R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754–1760.LiH.DurbinR.2009Fast and accurate short read alignment with Burrows-Wheeler transform2517541760Search in Google Scholar
Madani, M., Palomares-Rius, J. E., Vovlas, N., Castillo, P., and Tenuta, M. 2018. Integrative diagnosis of carrot cyst nematode (Heterodera carotae) using morphology and several molecular markers for an accurate identification. European Journal of Plant Pathology 150:1023–1039.MadaniM.Palomares-RiusJ. E.VovlasN.CastilloP.TenutaM.2018Integrative diagnosis of carrot cyst nematode (Heterodera carotae) using morphology and several molecular markers for an accurate identification15010231039Search in Google Scholar
Madani, M., Tenuta, M., Chizhov, V. N., and Subbotin, S. A. 2015. Diagnostics of stem and bulb nematodes, Ditylenchus weischeri and D. dipsaci (Nematoda: Anguinidae), using PCR with species-specific primers. Canadian Journal of Plant Pathology 37:212–220.MadaniM.TenutaM.ChizhovV. N.SubbotinS. A.2015Diagnostics of stem and bulb nematodes, Ditylenchus weischeri and D. dipsaci (Nematoda: Anguinidae), using PCR with species-specific primers37212220Search in Google Scholar
Madani, M., Ward, L. J., and De Boer, S. H. 2011. Hsp90 gene, an additional target for discrimination between the potato cyst nematodes, Globodera rostochiensis and G. pallida, and the related species, G. tabacum tabacum. European Journal of Plant Pathology 130:271–285.MadaniM.WardL. J.De BoerS. H.2011Hsp90 gene, an additional target for discrimination between the potato cyst nematodes, Globodera rostochiensis and G. pallida and the related species, G. tabacum tabacum130271285Search in Google Scholar
Manni, M., Berkeley, M. R., Seppey, M., and Zdobnov, E. M. 2021. BUSCO: Assessing genomic data quality and beyond. Current Protocols 1:e323.ManniM.BerkeleyM. R.SeppeyM.ZdobnovE. M.2021BUSCO: Assessing genomic data quality and beyond1e323Search in Google Scholar
Mimee, B., Lord, E., Veronneau, P. Y., Masonbrink, R., Yu, Q., and Akker, S. E. D. 2019. The draft genome of Ditylenchus dipsaci. Journal of Nematology 51:1–3.MimeeB.LordE.VeronneauP. Y.MasonbrinkR.YuQ.AkkerS. E. D.2019The draft genome of Ditylenchus dipsaci.5113Search in Google Scholar
Mirghasemi, S. N., Fanelli, E., Troccoli, A., Jamali, S., Sohani, M. M., and De Luca, F. 2019. Molecular variability of the root-lesion nematode, Pratylenchus loosi (Nematoda: Pratylenchidae), from tea in Iran. European Journal of Plant Pathology 155:557–569.MirghasemiS. N.FanelliE.TroccoliA.JamaliS.SohaniM. M.De LucaF.2019Molecular variability of the root-lesion nematode, Pratylenchus loosi (Nematoda: Pratylenchidae), from tea in Iran155557569Search in Google Scholar
Mokrini, F., Waeyenberge, L., Viaene, N., Andaloussi, F. A., and Moens, M. 2013. Quantitative detection of the root-lesion nematode, Pratylenchus penetrans, using qPCR. European Journal of Plant Pathology 137:403–413.MokriniF.WaeyenbergeL.ViaeneN.AndaloussiF. A.MoensM.2013Quantitative detection of the root-lesion nematode, Pratylenchus penetrans using qPCR137403413Search in Google Scholar
Nguyen, H. D. T., Sultana, T., Kesanakurti, P., and Hambleton, S. 2019. Genome sequencing and comparison of five Tilletia species to identify candidate genes for the detection of regulated species infecting wheat. IMA Fungus 10:11.NguyenH. D. T.SultanaT.KesanakurtiP.HambletonS.2019Genome sequencing and comparison of five Tilletia species to identify candidate genes for the detection of regulated species infecting wheat1011Search in Google Scholar
Powers, T., Harris, T., Higgins, R., Mullin, P., Sutton, L., and Powers, K. 2011. MOTUs, morphology, and biodiversity estimation: A case study using nematodes of the suborder Criconematina and a conserved 18S DNA Barcode. Journal of Nematology 43:35–48.PowersT.HarrisT.HigginsR.MullinP.SuttonL.PowersK.2011MOTUs, morphology, and biodiversity estimation: A case study using nematodes of the suborder Criconematina and a conserved 18S DNA Barcode433548Search in Google Scholar
Roach, M. J., Schmidt, S. A., and Borneman, A. R. 2018. Purge Haplotigs: Allelic contig reassignment for third-gen diploid genome assemblies. BMC Bioinformatics 19:1–10.RoachM. J.SchmidtS. A.BornemanA. R.2018Purge Haplotigs: Allelic contig reassignment for third-gen diploid genome assemblies19110Search in Google Scholar
Skantar, A. M., and Carta, L. K. 2000. Amplification of Hsp90 homologs from plant-parasitic nematodes using degenerate primers and ramped annealing PCR. Biotechniques 29:1182–1186.SkantarA. M.CartaL. K.2000Amplification of Hsp90 homologs from plant-parasitic nematodes using degenerate primers and ramped annealing PCR2911821186Search in Google Scholar
Skantar, A. M., and Carta, L. K. 2004. Molecular characterization and phylogenetic evaluation of the Hsp90 gene from selected nematodes. Journal of Nematology 36:466–480.SkantarA. M.CartaL. K.2004Molecular characterization and phylogenetic evaluation of the Hsp90 gene from selected nematodes36466480Search in Google Scholar
Sturhan, D., and Brzeski, M. W. 1991. Stem and bulb nematodes, Ditylenchus spp. Pp. 423–464 in W. R. Nickle, ed. Manual of agricultural nematology, 1st ed. Boca Raton: CRC Press.SturhanD.BrzeskiM. W.1991Stem and bulb nematodes, Ditylenchus spp.423464NickleW. R.ed.1st ed.Boca RatonCRC PressSearch in Google Scholar
Subbotin, S. A., Deimi, A. M., Zheng, J., and Chizhov, V. N. 2011. Length variation and repetitive sequences of internal transcribed spacer of ribosomal RNA gene, diagnostics and relationships of populations of potato rot nematode, Ditylenchus destructor Thorne, 1945 (Tylenchida: Anguinidae). Nematology 13: 773–785.SubbotinS. A.DeimiA. M.ZhengJ.ChizhovV. N.2011Length variation and repetitive sequences of internal transcribed spacer of ribosomal RNA gene, diagnostics and relationships of populations of potato rot nematode, Ditylenchus destructor Thorne, 1945 (Tylenchida: Anguinidae)13773785Search in Google Scholar
Subbotin, S. A., Halford, P. D., Warry, A., and Perry, R. N. 2000. Variations in ribosomal DNA sequences and phylogeny of Globodera parasitising solanaceous plants. Nematology 2:591–604.SubbotinS. A.HalfordP. D.WarryA.PerryR. N.2000Variations in ribosomal DNA sequences and phylogeny of Globodera parasitising solanaceous plants2591604Search in Google Scholar
Subbotin, S. A., Madani, M., Krall, E., Sturhan, D., and Moens, M. 2005. Molecular diagnostics, taxonomy, and phylogeny of the stem nematode Ditylenchus dipsaci species complex based on the sequences of the internal transcribed spacer-rDNA. Phytopathology 95:1308–1315.SubbotinS. A.MadaniM.KrallE.SturhanD.MoensM.2005Molecular diagnostics, taxonomy, and phylogeny of the stem nematode Ditylenchus dipsaci species complex based on the sequences of the internal transcribed spacer-rDNA9513081315Search in Google Scholar
Sun, F., Henry, N., Craig, S., Bilodeau, G., Yu, Q., and Castillo, P. 2016. A multiplex real-time PCR assay for simultaneous detection and differentiation of Ditylenchus dipsaci, D. gigas, and D. weischeri. Journal of Nematology 48:374–375 (Abstr.).SunF.HenryN.CraigS.BilodeauG.YuQ.CastilloP.2016A multiplex real-time PCR assay for simultaneous detection and differentiation of Ditylenchus dipsaci, D. gigas and D. weischeri.48374375(Abstr.)Search in Google Scholar
Tenuta, M., Madani, M., Briar, S., Molina, O., Gulden, R., and Subbotin, S. A. 2014. Occurrence of Ditylenchus weischeri and not D. dipsaci in field pea harvest samples and Cirsium arvense in the Canadian Prairies. Journal of Nematology 46:376–384.TenutaM.MadaniM.BriarS.MolinaO.GuldenR.SubbotinS. A.2014Occurrence of Ditylenchus weischeri and not D. dipsaci in field pea harvest samples and Cirsium arvense in the Canadian Prairies46376384Search in Google Scholar
Thiéry, M., and Mugniéry, D. 1996. Interspecific rDNA restriction fragment length polymorphism in Globodera species, parasites of Solanaceous plants. Fundamental and Applied Nematology 19:471–479.ThiéryM.MugniéryD.1996Interspecific rDNA restriction fragment length polymorphism in Globodera species, parasites of Solanaceous plants19471479Search in Google Scholar
Troccoli, A., Fanelli, E., Castillo, P., Liebanas, G., Cotroneo, A., and De Luca, F. 2021. Pratylenchus vovlasi sp. nov. (Nematoda: Pratylenchidae) on raspberries in North Italy with a morphometrical and molecular characterization. Plants 10:1068.TroccoliA.FanelliE.CastilloP.LiebanasG.CotroneoA.De LucaF.2021Pratylenchus vovlasi sp. nov. (Nematoda: Pratylenchidae) on raspberries in North Italy with a morphometrical and molecular characterization101068Search in Google Scholar
Walker, B. J., Abeel, T., Shea, T., Priest, M., Abouelliel, A., Sakthikumar, S., Cuomo, C. A., Zeng, Q., Wortman, J., Young, S. K., and Earl, A. M. 2014. Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One 9:e112963.WalkerB. J.AbeelT.SheaT.PriestM.AbouellielA.SakthikumarS.CuomoC. A.ZengQ.WortmanJ.YoungS. K.EarlA. M.2014Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement9e112963Search in Google Scholar
Yu, Q., Peng, H., Ponomareva, E., Cullis, J., Lewis, C. T., Lévesque, C. A., and Peng, D. L. 2014. Draft genome and transcriptome sequences of Ditylenchus destructor and Ditylenchus dipsaci. Journal of Nematology 46:258 (Abstr.).YuQ.PengH.PonomarevaE.CullisJ.LewisC. T.LévesqueC. A.PengD. L.2014Draft genome and transcriptome sequences of Ditylenchus destructor and Ditylenchus dipsaci46258(Abstr.)Search in Google Scholar