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Characterization of OXA232-Producing Carbapenem-Resistant Klebsiella pneumoniae: Genomic Analysis and Virulence Assessment

Zhouxun Li

Zhouxun Li

  • Department of Clinical Laboratory, The First Affiliated Hospital of Kunming Medical University; Yunnan Key Laboratory of Laboratory Medicine; Yunnan Province Clinical Research Center for Laboratory MedicineKunming, China
  • Department of Nuclear Medicine, The Affiliated Hospital of Yunnan UniversityKunming, China
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Li, Zhouxun
, 
Chunyan Wu

Chunyan Wu

Department of Clinical Laboratory, The First Affiliated Hospital of Kunming Medical University; Yunnan Key Laboratory of Laboratory Medicine; Yunnan Province Clinical Research Center for Laboratory MedicineKunming, China
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Wu, Chunyan
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Xuemei Cai

Xuemei Cai

Department of Clinical Laboratory, The First Affiliated Hospital of Kunming Medical University; Yunnan Key Laboratory of Laboratory Medicine; Yunnan Province Clinical Research Center for Laboratory MedicineKunming, China
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Cai, Xuemei
, 
Yongli Song

Yongli Song

Department of Clinical Laboratory, The First Affiliated Hospital of Kunming Medical University; Yunnan Key Laboratory of Laboratory Medicine; Yunnan Province Clinical Research Center for Laboratory MedicineKunming, China
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Song, Yongli
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Xingping Zheng

Xingping Zheng

  • Department of Clinical Laboratory, The First Affiliated Hospital of Kunming Medical University; Yunnan Key Laboratory of Laboratory Medicine; Yunnan Province Clinical Research Center for Laboratory MedicineKunming, China
  • Department of Transfusion Medicine, The Affiliated Hospital of Yunnan UniversityKunming, China
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Zheng, Xingping
, 
Yuan He

Yuan He

Department of Clinical Laboratory, The First Affiliated Hospital of Kunming Medical University; Yunnan Key Laboratory of Laboratory Medicine; Yunnan Province Clinical Research Center for Laboratory MedicineKunming, China
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He, Yuan
 oraz 
Guibo Song

Guibo Song

Department of Clinical Laboratory, The First Affiliated Hospital of Kunming Medical University; Yunnan Key Laboratory of Laboratory Medicine; Yunnan Province Clinical Research Center for Laboratory MedicineKunming, China
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Song, Guibo
  
26 mar 2025
Characterization of OXA232-Producing Carbapenem-Resistant Klebsiella pneumoniae: Genomic Analysis and Virulence Assessment's Cover Image
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Kategoria artykułu: ORIGINAL PAPER
Data publikacji: 26 mar 2025
Zakres stron: 82 - 94
Otrzymano: 12 lis 2024
Przyjęty: 24 sty 2025
DOI: https://doi.org/10.33073/pjm-2025-007
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© 2025 Zhouxun Li et al., published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

Fig. 1.

Circular representation of IncFII/FIB-type plasmids in ST231 isolates. The plasmid pIncFIB-Q1 spans 127,300 base pairs (bp). The map is divided into several tracks, each representing different genomic features. The outermost tracks mark specific genes with resistance markers (e.g., blaKPC, qnrB19), the middle tracks show genes with varying expression levels indicated by different color shades, and the innermost tracks depict GC content and GC skew. Each track uses a distinct color code, as the legend explains, to represent gene density, antibiotic resistance genes, virulence factors, and mobile genetic elements.
Circular representation of IncFII/FIB-type plasmids in ST231 isolates. The plasmid pIncFIB-Q1 spans 127,300 base pairs (bp). The map is divided into several tracks, each representing different genomic features. The outermost tracks mark specific genes with resistance markers (e.g., blaKPC, qnrB19), the middle tracks show genes with varying expression levels indicated by different color shades, and the innermost tracks depict GC content and GC skew. Each track uses a distinct color code, as the legend explains, to represent gene density, antibiotic resistance genes, virulence factors, and mobile genetic elements.

Fig. 2.

Phylogenetic analysis and genotypic characterization of bacterial strains. The phylogenetic relationships and distribution of resistance genes and virulence factors across ten bacterial strains (Kp1 to Kp13) are displayed. The phylogenetic tree (left) illustrates evolutionary distances based on whole-genome sequencing data, while the heatmap (right) indicates the presence (colored) and absence (white) of specific resistance genes (green) and virulence factors (blue).
Phylogenetic analysis and genotypic characterization of bacterial strains. The phylogenetic relationships and distribution of resistance genes and virulence factors across ten bacterial strains (Kp1 to Kp13) are displayed. The phylogenetic tree (left) illustrates evolutionary distances based on whole-genome sequencing data, while the heatmap (right) indicates the presence (colored) and absence (white) of specific resistance genes (green) and virulence factors (blue).

Fig. 3.

Phylogenetic analysis of global ST231 Klebsiella pneumoniae isolates. The phylogenetic tree constructed from core SNP analyses of 264 global ST231 isolates is color-coded to represent various clades (R1: Clades), geographical origins (R2: Country and extra: Province), and specific genetic characteristics (R3: OXA-48-like types; R4: Yersiniabactin types; R5: Aerobactin type, R6: K locus, R7: O locus). Each concentric ring corresponds to different attributes, such as antibiotic resistance genes, toxin production genes, and other relevant genetic markers. The innermost circle shows phylogenetic relationships based on whole-genome sequencing data.
Phylogenetic analysis of global ST231 Klebsiella pneumoniae isolates. The phylogenetic tree constructed from core SNP analyses of 264 global ST231 isolates is color-coded to represent various clades (R1: Clades), geographical origins (R2: Country and extra: Province), and specific genetic characteristics (R3: OXA-48-like types; R4: Yersiniabactin types; R5: Aerobactin type, R6: K locus, R7: O locus). Each concentric ring corresponds to different attributes, such as antibiotic resistance genes, toxin production genes, and other relevant genetic markers. The innermost circle shows phylogenetic relationships based on whole-genome sequencing data.

Fig. 4.

Weight change and survival analysis of mice infected with ST231 Klebsiella pneumoniae. Six-week-old male C57BL/6 mice, grouped in trios, were inoculated intranasally with 30 μl of 108 CFU/ml bacterial suspension. Health monitoring occurred daily for seven days. a)Daily average weight fluctuations among mice infected with different ST231 K. pneumoniae strains; b)comparison of mouse weight between day 1 and day 7 for different ST231 K. pneumoniae strains. * – p < 0.05, ** – p < 0.01. The standard strain ATCC® 700603™ as a positive control.
Weight change and survival analysis of mice infected with ST231 Klebsiella pneumoniae. Six-week-old male C57BL/6 mice, grouped in trios, were inoculated intranasally with 30 μl of 108 CFU/ml bacterial suspension. Health monitoring occurred daily for seven days. a)Daily average weight fluctuations among mice infected with different ST231 K. pneumoniae strains; b)comparison of mouse weight between day 1 and day 7 for different ST231 K. pneumoniae strains. * – p < 0.05, ** – p < 0.01. The standard strain ATCC® 700603™ as a positive control.

Fig. 5.

Colony count analysis in mouse alveolar lavage fluids and blood samples post infection. The growth levels, categorized into low (< 30%), medium (30–60%), and high (> 60%) based on percentage colony formation. a)The colony counts from cultures of blood samples collected from mice; b)the colony counts from cultures of alveolar lavage fluids obtained from mice.
Colony count analysis in mouse alveolar lavage fluids and blood samples post infection. The growth levels, categorized into low (< 30%), medium (30–60%), and high (> 60%) based on percentage colony formation. a)The colony counts from cultures of blood samples collected from mice; b)the colony counts from cultures of alveolar lavage fluids obtained from mice.

Fig. 6.

Inflammatory response to ST231 infection in mice. The levels of key inflammatory markers (CCL2/MCP-1, IL-6, and TNF-α) were quantified in the alveolar lavage fluid (a-c) and blood (d-f) of infected mice. The data from nine independent experiments. * – p < 0.05, ** – p < 0.01. *** – p < 0.001. The standard strain ATCC® 700603™ as a positive control.
Inflammatory response to ST231 infection in mice. The levels of key inflammatory markers (CCL2/MCP-1, IL-6, and TNF-α) were quantified in the alveolar lavage fluid (a-c) and blood (d-f) of infected mice. The data from nine independent experiments. * – p < 0.05, ** – p < 0.01. *** – p < 0.001. The standard strain ATCC® 700603™ as a positive control.

Fig. 7.

Histopathological impact of ST231 isolates on mouse tissues. The images, stained with hematoxylin and eosin, reveal significant tissue damage, particularly in the lungs (b–g) and livers (j–o), where extensive cellular infiltration and structural disruption are evident. Renal injury was not significant, and data are not shown.
Histopathological impact of ST231 isolates on mouse tissues. The images, stained with hematoxylin and eosin, reveal significant tissue damage, particularly in the lungs (b–g) and livers (j–o), where extensive cellular infiltration and structural disruption are evident. Renal injury was not significant, and data are not shown.

Clinical and demographic characteristics_

Patient No./isolate Age/sex Ward Specimen Diagnosis Invasive procedure Antimicrobial therapy Prognosis
12(Kp1) 52(M) ICU drainage fluids abscess of the parotid gland, septic shock incision and drainage of an abscess meropenem, tigecycline, fluconazole unknown
32(Kp2) 68(M) Cardiac Surgery sputum severe pneumonia, septic shock heart surgery died
52(Kp3) 51(M) Transplantation Centre blood malignant tumor of the hilar bile duct resection of hepatic bile duct lesions tigecycline recovered
55(Kp4) 45(F) Transplantation Centre drainage fluids liver abscess partial hepatic lobectomy vancomycin, flucytosine recovered
206(Kp6) 56(M) EICU ascites abdominal infection, infectious shock left thoracocentesis for drainage cefoperazone sulbactam, polymyxin, meropenem, linezolid, tigecycline unknown
209(Kp7) 78(M) Neurology blood sepsis, bacteremia non-operative imipenem, tigecycline recovered
255(Kp8) 50(M) ICU ascites acute necrotizing pancreatitis, septic shock incision and drainage of retroperitoneal abscesses vancomycin, imipenem, tigecycline, caspofungin recovered
356(Kp9) 68(M) ICU sputum severe pneumonia, septic shock tracheal tube vancomycin, imipenem, polymyxin, caspofungin died
434(Kp10) 37(M) Hepatobiliary Surgery sputum septic shock abdominal exploratory surgery, tracheal tube ertapenem, meropenem, imipenem unknown
J19(Kp13) 58(M) Cardiac Surgery sputum coronary atherosclerotic heart disease coronary bypass graft recovered

Genotypic profiles and resistance mechanisms of Klebsiella pneumoniae isolates_

Isolates ST type Plasmid replicons Size of plasmid replicons β-lactamases and carbapenemases
Kp1 ST11 IncFIB(K)/IncHI1B, IncR/IncFII, IncFIB, IncFII, ColRNAI, ColKP3 193835 bp, 133766 bp, 112792 bp, 84876 bp, 11970 bp, 5596bp, 6141 bp SHV-11, SHV-12, CTX-M-65, LAP-2, OXA-232, KPC-2
Kp2 ST231 IncFII/IncFIB, IncFIA/IncFII, ColKP3 126359 bp, 71307 bp, 6141 bp CTX-M-15, SHV-1, OXA-232 CTX-M-186, TEM-1,
Kp3 ST231 IncFII/IncFIB, IncFIA/IncFII, ColKP3 127803 bp, 71307 bp, 6141 bp CTX-M-15, SHV-1, OXA-232 CTX-M-186, TEM-1,
Kp4 ST231 IncFII/IncFIB, IncFIA/IncFII, ColKP3 127803 bp, 71688 bp, 6141 bp CTX-M-15, SHV-1, OXA-232 CTX-M-186, TEM-1,
Kp6 ST231 IncFII/IncFIB, IncFIA/IncFII, ColKP3 126406 bp, 71307 bp, 6141 bp CTX-M-15, SHV-1, OXA-232 CTX-M-186, TEM-1,
Kp7 ST231 IncFII/IncFIB, IncFIA/IncFII, ColKP3 127803 bp, 71307 bp, 6141 bp CTX-M-15, SHV-1, OXA-232 CTX-M-186, TEM-1,
Kp8 ST231 IncFII/IncFIB, IncFIA/IncFII, ColKP3 127803 bp, 71307 bp, 6101 bp CTX-M-15, SHV-1, OXA-232 CTX-M-186, TEM-1,
Kp9 ST231 IncFII/IncFIB, IncFIA/IncFII, ColKP3 127806 bp, 71307 bp, 6141 bp CTX-M-15, SHV-1, OXA-232 CTX-M-186, TEM-1,
Kp10 ST231 IncFII/IncFIB, IncFIA/IncFII, ColKP3 127806bp, 71307 bp, 6141 bp CTX-M-186, TEM-1, CTX-M-15, SHV-1, OXA-232
Kp13 ST231 IncFIB/IncFII(K), IncFIA/IncFII, ColKP3 126359 bp, 71305 bp, 6141 bp CTX-M-186, TEM-1, CTX-M-15, SHV-1, OXA-232
Język:
Angielski
Częstotliwość wydawania:
4 razy w roku
Dziedziny czasopisma:
Nauki biologiczne, Mikrobiologia i wirusologia
Kanał RSS czasopisma