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Rapid and Simple Approaches for Diagnosis of Staphylococcus aureus in Bloodstream Infections

 oraz    | 09 gru 2022

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Abat C, Chaudet H, Colson P, Rolain JM, Raoult D. Real-time microbiology laboratory surveillance system to detect abnormal events and emerging infections, Marseille, France. Emerg Infect Dis. 2015 Aug;21(8):1302–1310. https://doi.org/10.3201/eid2108.141419Abat C Chaudet H Colson P Rolain JM Raoult D Real-time microbiology laboratory surveillance system to detect abnormal events and emerging infections, Marseille, France Emerg Infect Dis 2015 Aug2181302 1310 https://doi.org/10.3201/eid2108.14141910.3201/eid2108.141419451772726196165Search in Google Scholar

Asgeirsson H, Thalme A, Weiland O. Staphylococcus aureus bacteraemia and endocarditis – epidemiology and outcome: a review. Infect Dis (Lond). 2018 Mar;50(3):175–192. https://doi.org/10.1080/23744235.2017.1392039Asgeirsson H Thalme A Weiland O Staphylococcus aureus bacteraemia and endocarditis – epidemiology and outcome: a review Infect Dis (Lond) 2018 Mar503175 192 https://doi.org/10.1080/23744235.2017.139203910.1080/23744235.2017.139203929105519Search in Google Scholar

Baron EJ, Mix S, Moradi W. Clinical utility of an automated instrument for gram staining single slides. J Clin Microbiol. 2010 Jun; 48(6):2014–2015. https://doi.org/10.1128/jcm.02503-09Baron EJ Mix S Moradi W Clinical utility of an automated instrument for gram staining single slides J Clin Microbiol 2010 Jun4862014 2015 https://doi.org/10.1128/jcm.02503-0910.1128/JCM.02503-09288453120410348Search in Google Scholar

Belmekki M, Mammeri H, Hamdad F, Rousseau F, Canarelli B, Biendo M. Comparison of Xpert MRSA/SA nasal and MRSA/SA ELITe MGB assays for detection of the mecA gene with susceptibility testing methods for determination of methicillin resistance in Staphylococcus aureus isolates. J Clin Microbiol. 2013 Oct;51(10):3183–3191. https://doi.org/10.1128/jcm.00860-13Belmekki M Mammeri H Hamdad F Rousseau F Canarelli B Biendo M Comparison of Xpert MRSA/SA nasal and MRSA/SA ELITe MGB assays for detection of the mecA gene with susceptibility testing methods for determination of methicillin resistance in Staphylococcus aureus isolates J Clin Microbiol 2013 Oct51103183 3191 https://doi.org/10.1128/jcm.00860-1310.1128/JCM.00860-13381163023863569Search in Google Scholar

Boyanova L. Direct Gram staining and its various benefits in the diagnosis of bacterial infections. Postgrad Med. 2018 Jan;130(1):105–110. https://doi.org/10.1080/00325481.2018.1398049Boyanova L Direct Gram staining and its various benefits in the diagnosis of bacterial infections Postgrad Med 2018 Jan1301105 110 https://doi.org/10.1080/00325481.2018.139804910.1080/00325481.2018.139804929091518Search in Google Scholar

Carretto E, Bardaro M, Russello G, Mirra M, Zuelli C, Barbarini D. Comparison of the Staphylococcus QuickFISH BC test with the tube coagulase test performed on positive blood cultures for evaluation and application in a clinical routine setting. J Clin Microbiol. 2013 Jan;51(1):131–135. https://doi.org/10.1128/jcm.02103-12Carretto E Bardaro M Russello G Mirra M Zuelli C Barbarini D Comparison of the Staphylococcus QuickFISH BC test with the tube coagulase test performed on positive blood cultures for evaluation and application in a clinical routine setting J Clin Microbiol 2013 Jan511131 135 https://doi.org/10.1128/jcm.02103-1210.1128/JCM.02103-12353624523100336Search in Google Scholar

Cenci E, Paggi R, Socio GV, Bozza S, Camilloni B, Pietrella D, Mencacci A. Accelerate Pheno™ blood culture detection system: a literature review. Future Microbiol. 2020 Oct; 15:1595–1605. https://doi.org/10.2217/fmb-2020-0177Cenci E Paggi R Socio GV Bozza S Camilloni B Pietrella D Mencacci A Accelerate Pheno™ blood culture detection system: a literature review Future Microbiol 2020 Oct151595 1605 https://doi.org/10.2217/fmb-2020-017710.2217/fmb-2020-017733215528Search in Google Scholar

Charnot-Katsikas A, Tesic V, Love N, Hill B, Bethel C, Boonlayangoor S, Beavis KG. Use of the Accelerate Pheno system for identification and antimicrobial susceptibility testing of pathogens in positive blood cultures and impact on time to results and workflow. J Clin Microbiol. 2017 Dec 26;56(1):e01166-17. https://doi.org/10.1128/jcm.01166-17Charnot-Katsikas A Tesic V Love N Hill B Bethel C Boonlayangoor S Beavis KG Use of the Accelerate Pheno system for identification and antimicrobial susceptibility testing of pathogens in positive blood cultures and impact on time to results and workflow J Clin Microbiol 2017 Dec 26561e01166 17 https://doi.org/10.1128/jcm.01166-1710.1128/JCM.01166-17574421329118168Search in Google Scholar

Christner M, Rohde H, Wolters M, Sobottka I, Wegscheider K, Aepfelbacher M. Rapid identification of bacteria from positive blood culture bottles by use of matrix-assisted laser desorption-ionization time of flight mass spectrometry fingerprinting. J Clin Microbiol. 2010 May;48(5):1584–1591. https://doi.org/10.1128/jcm.01831-09Christner M Rohde H Wolters M Sobottka I Wegscheider K Aepfelbacher M Rapid identification of bacteria from positive blood culture bottles by use of matrix-assisted laser desorption-ionization time of flight mass spectrometry fingerprinting J Clin Microbiol 2010 May4851584 1591 https://doi.org/10.1128/jcm.01831-0910.1128/JCM.01831-09286388820237093Search in Google Scholar

Cortazzo V, D’Inzeo T, Giordano L, Menchinelli G, Liotti FM, Fiori B, De Maio F, Luzzaro F, Sanguinetti M, Posteraro B, et al. Comparing BioFire FilmArray BCID2 and BCID panels for direct detection of bacterial pathogens and antimicrobial resistance genes from positive blood cultures. J Clin Microbiol. 2021 Mar 19;59(4): e03163-20. https://doi.org/10.1128/jcm.03163-20Cortazzo V D’Inzeo T Giordano L Menchinelli G Liotti FM Fiori B De Maio F Luzzaro F Sanguinetti M Posteraro B et al Comparing BioFire FilmArray BCID2 and BCID panels for direct detection of bacterial pathogens and antimicrobial resistance genes from positive blood cultures J Clin Microbiol 2021 Mar 19594 e03163 20 https://doi.org/10.1128/jcm.03163-2010.1128/JCM.03163-20809273433472903Search in Google Scholar

Curtoni A, Cipriani R, Marra ES, Barbui AM, Cavallo R, Costa C. Rapid identification of microorganisms from positive blood culture by MALDI-TOF MS after short-term incubation on solid medium. Curr Microbiol. 2017 Jan;74(1):97–102. https://doi.org/10.1007/s00284-016-1161-2Curtoni A Cipriani R Marra ES Barbui AM Cavallo R Costa C Rapid identification of microorganisms from positive blood culture by MALDI-TOF MS after short-term incubation on solid medium Curr Microbiol 2017 Jan74197 102 https://doi.org/10.1007/s00284-016-1161-210.1007/s00284-016-1161-227858149Search in Google Scholar

De Angelis G, Posteraro B, De Carolis E, Menchinelli G, Franceschi F, Tumbarello M, De Pascale G, Spanu T, Sanguinetti M. T2Bacteria magnetic resonance assay for the rapid detection of ESKAPEc pathogens directly in whole blood. J Antimicrob Chem-other. 2018 Mar 1;73(suppl 4):iv20–iv26. https://doi.org/10.1093/jac/dky049De Angelis G Posteraro B De Carolis E Menchinelli G Franceschi F Tumbarello M De Pascale G Spanu T Sanguinetti M T2Bacteria magnetic resonance assay for the rapid detection of ESKAPEc pathogens directly in whole blood J Antimicrob Chem-other 2018 Mar 173suppl 4iv20–iv26 https://doi.org/10.1093/jac/dky04910.1093/jac/dky04929608753Search in Google Scholar

Deck MK, Anderson ES, Buckner RJ, Colasante G, Coull JM, Crystal B, Della Latta P, Fuchs M, Fuller D, Harris W, et al. Multicenter evaluation of the Staphylococcus QuickFISH method for simultaneous identification of Staphylococcus aureus and coagulase-negative staphylococci directly from blood culture bottles in less than 30 minutes. J Clin Microbiol. 2012 Jun;50(6):1994–1998. https://doi.org/10.1128/jcm.00225-12Deck MK Anderson ES Buckner RJ Colasante G Coull JM Crystal B Della Latta P Fuchs M Fuller D Harris W et al Multicenter evaluation of the Staphylococcus QuickFISH method for simultaneous identification of Staphylococcus aureus and coagulase-negative staphylococci directly from blood culture bottles in less than 30 minutes J Clin Microbiol 2012 Jun5061994 1998 https://doi.org/10.1128/jcm.00225-1210.1128/JCM.00225-12337210222493336Search in Google Scholar

Dhiman N, Trienski TL, DiPersio LP, DiPersio JR. Evaluation of the BinaxNOW Staphylococcus aureus test for rapid identification of Gram-positive cocci from VersaTREK blood culture bottles. J Clin Microbiol. 2013 Sep;51(9):2939–2942. https://doi.org/10.1128/jcm.01087-13Dhiman N Trienski TL DiPersio LP DiPersio JR Evaluation of the BinaxNOW Staphylococcus aureus test for rapid identification of Gram-positive cocci from VersaTREK blood culture bottles J Clin Microbiol 2013 Sep5192939 2942 https://doi.org/10.1128/jcm.01087-1310.1128/JCM.01087-13375466423804393Search in Google Scholar

Drevinek P, Hurych J, Antuskova M, Tkadlec J, Berousek J, Prikrylova Z, Bures J, Vajter J, Soucek M, Masopust J, et al. Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis. Microbiologyopen. 2021 Jun;10(3):e1210. https://doi.org/10.1002/mbo3.1210Drevinek P Hurych J Antuskova M Tkadlec J Berousek J Prikrylova Z Bures J Vajter J Soucek M Masopust J et al Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis Microbiologyopen 2021 Jun103e1210 https://doi.org/10.1002/mbo3.121010.1002/mbo3.1210820928234180598Search in Google Scholar

Enomoto H, Inoue S, Matsuhisa A, Nishiguchi S. Diagnosis of spontaneous bacterial peritonitis and an in situ hybridization approach to detect an “unidentified” pathogen. Int J Hepatol. 2014; 2014:634617. https://doi.org/10.1155/2014/634617Enomoto H Inoue S Matsuhisa A Nishiguchi S Diagnosis of spontaneous bacterial peritonitis and an in situ hybridization approach to detect an “unidentified” pathogen Int J Hepatol 2014 2014634617 https://doi.org/10.1155/2014/63461710.1155/2014/634617412357625132996Search in Google Scholar

Foster AG. Rapid Identification of microbes in positive blood cultures by use of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system. J Clin Microbiol. 2013 Nov;51(11):3717–3719. https://doi.org/10.1128/jcm.01679-13Foster AG Rapid Identification of microbes in positive blood cultures by use of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system J Clin Microbiol 2013 Nov51113717 3719 https://doi.org/10.1128/jcm.01679-1310.1128/JCM.01679-13388975623985920Search in Google Scholar

Gonzalez MD, Chao T, Pettengill MA. Modern blood culture: management decisions and method options. Clin Lab Med. 2020 Dec; 40(4):379–392. https://doi.org/10.1016/j.cll.2020.07.001Gonzalez MD Chao T Pettengill MA Modern blood culture: management decisions and method options Clin Lab Med 2020 Dec404379 392 https://doi.org/10.1016/j.cll.2020.07.00110.1016/j.cll.2020.07.001750151933121610Search in Google Scholar

González V, Padilla E, Giménez M, Vilaplana C, Pérez A, Fernández G, Quesada MD, Pallarés MA, Ausina V. Rapid diagnosis ofGonzález V Padilla E Giménez M Vilaplana C Pérez A Fernández G Quesada MD Pallarés MA Ausina V Rapid diagnosis ofSearch in Google Scholar

Staphylococcus aureus bacteremia using S. aureus PNA FISH. Eur J Clin Microbiol Infect Dis. 2004 May;23(5):396–398. https://doi.org/10.1007/s10096-004-1112-xStaphylococcus aureus bacteremia using S aureus PNA FISH Eur J Clin Microbiol Infect Dis 2004 May235396 398 https://doi.org/10.1007/s10096-004-1112-x10.1007/s10096-004-1112-x15112062Search in Google Scholar

Hadano Y, Isoda M, Ishibashi K, Kakuma T. Validation of blood culture gram staining for the detection of Staphylococcus aureus by the ‘oozing sign’ surrounding clustered gram-positive cocci: a prospective observational study. BMC Infect Dis. 2018 Sep 29;18(1):490. https://doi.org/10.1186/s12879-018-3412-2Hadano Y Isoda M Ishibashi K Kakuma T Validation of blood culture gram staining for the detection of Staphylococcus aureus by the ‘oozing sign’ surrounding clustered gram-positive cocci: a prospective observational study BMC Infect Dis 2018 Sep 29181490 https://doi.org/10.1186/s12879-018-3412-210.1186/s12879-018-3412-2616287430268097Search in Google Scholar

Heraud S, Freydiere AM, Doleans-Jordheim A, Bes M, Tristan A, Vandenesch F, Laurent F, Dauwalder O. Direct identification of Staphylococcus aureus and determination of methicillin susceptibility from positive blood-culture bottles in a Bact/ALERT system using Binax Now S. aureus and PBP2a tests. Ann Lab Med. 2015 Jul; 35(4):454–457. https://doi.org/10.3343/alm.2015.35.4.454Heraud S Freydiere AM Doleans-Jordheim A Bes M Tristan A Vandenesch F Laurent F Dauwalder O Direct identification of Staphylococcus aureus and determination of methicillin susceptibility from positive blood-culture bottles in a Bact/ALERT system using Binax Now S aureus and PBP2a tests. Ann Lab Med 2015 Jul354454 457 https://doi.org/10.3343/alm.2015.35.4.45410.3343/alm.2015.35.4.454444658626131419Search in Google Scholar

Holma T, Torvikoski J, Friberg N, Nevalainen A, Tarkka E, Antikainen J, Martelin JJ. Rapid molecular detection of pathogenic microorganisms and antimicrobial resistance markers in blood cultures: evaluation and utility of the next-generation FilmArray Blood Culture Identification 2 panel. Eur J Clin Microbiol Infect Dis. 2022 Mar;41(3):363–371. https://doi.org/10.1007/s10096-021-04314-2Holma T Torvikoski J Friberg N Nevalainen A Tarkka E Antikainen J Martelin JJ Rapid molecular detection of pathogenic microorganisms and antimicrobial resistance markers in blood cultures: evaluation and utility of the next-generation FilmArray Blood Culture Identification 2 panel Eur J Clin Microbiol Infect Dis 2022 Mar413363 371 https://doi.org/10.1007/s10096-021-04314-210.1007/s10096-021-04314-2883127434350523Search in Google Scholar

Hu YL, Hsueh SC, Ding GS, Chuang PC, Chen JM, Lu CY, Chang LY, Huang LM, Lee PI, Hsueh PR. Applicability of an in-house saponin-based extraction method in Bruker Biotyper matrix-assisted laser desorption/ionization time-of-flight mass spectrometry system for identifying bacterial and fungal species in positively flagged pediatric VersaTREK blood cultures. J Microbiol Immunol Infect. 2020 Dec;53(6):916–924. https://doi.org/10.1016/j.jmii.2020.01.004Hu YL Hsueh SC Ding GS Chuang PC Chen JM Lu CY Chang LY Huang LM Lee PI Hsueh PR Applicability of an in-house saponin-based extraction method in Bruker Biotyper matrix-assisted laser desorption/ionization time-of-flight mass spectrometry system for identifying bacterial and fungal species in positively flagged pediatric VersaTREK blood cultures J Microbiol Immunol Infect 2020 Dec536916 924 https://doi.org/10.1016/j.jmii.2020.01.00410.1016/j.jmii.2020.01.00432094073Search in Google Scholar

Jones BE, Ying J, Stevens V, Haroldsen C, He T, Nevers M, Christensen MA, Nelson RE, Stoddard GJ, Sauer BC, et al. Empirical anti-MRSA vs standard antibiotic therapy and risk of 30-day mortality in patients hospitalized for pneumonia. JAMA Intern Med. 2020 Apr 1;180(4):552–560. https://doi.org/10.1001/jamainternmed.2019.7495Jones BE Ying J Stevens V Haroldsen C He T Nevers M Christensen MA Nelson RE Stoddard GJ Sauer BC et al Empirical anti-MRSA vs standard antibiotic therapy and risk of 30-day mortality in patients hospitalized for pneumonia JAMA Intern Med 2020 Apr 11804552 560 https://doi.org/10.1001/jamainternmed.2019.749510.1001/jamainternmed.2019.7495704281832065604Search in Google Scholar

Kern WV, Rieg S. Burden of bacterial bloodstream infection – a brief update on epidemiology and significance of multidrug-resistant pathogens. Clin Microbiol Infect. 2020 Feb; 26 (2):151–157. https://doi.org/10.1016/j.cmi.2019.10.031Kern WV Rieg S Burden of bacterial bloodstream infection – a brief update on epidemiology and significance of multidrug-resistant pathogens Clin Microbiol Infect 2020 Feb26 2151 157 https://doi.org/10.1016/j.cmi.2019.10.03110.1016/j.cmi.2019.10.03131712069Search in Google Scholar

Kudo M, Matsuo Y, Nakasendo A, Inoue S, Goto H, Tsukiji J, Watanuki Y, Ueda A, Kaneko T, Ishigatsubo Y. Potential clinical benefit of the in situ hybridization method for the diagnosis of sepsis. J Infect Chemother. 2009 Feb;15(1):23–26. https://doi.org/10.1007/s10156-008-0655-7Kudo M Matsuo Y Nakasendo A Inoue S Goto H Tsukiji J Watanuki Y Ueda A Kaneko T Ishigatsubo Y Potential clinical benefit of the in situ hybridization method for the diagnosis of sepsis J Infect Chemother 2009 Feb15123 26 https://doi.org/10.1007/s10156-008-0655-710.1007/s10156-008-0655-719280296Search in Google Scholar

Lin JF, Ge MC, Liu TP, Chang SC, Lu JJ. A simple method for rapid microbial identification from positive monomicrobial blood culture bottles through matrix-assisted laser desorption ionization time-of-flight mass spectrometry. J Microbiol Immunol Infect. 2018 Oct;51(5):659–665. https://doi.org/10.1016/j.jmii.2017.03.005Lin JF Ge MC Liu TP Chang SC Lu JJ A simple method for rapid microbial identification from positive monomicrobial blood culture bottles through matrix-assisted laser desorption ionization time-of-flight mass spectrometry J Microbiol Immunol Infect 2018 Oct515659 665 https://doi.org/10.1016/j.jmii.2017.03.00510.1016/j.jmii.2017.03.00528711436Search in Google Scholar

Liu X, Su T, Hsu YS, Yu H, Yang HS, Jiang L, Zhao Z. Rapid identification and discrimination of methicillin-resistant Staphylococcus aureus strains via matrix-assisted laser desorption/ ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom. 2021 Jan 30;35(2):e8972. https://doi.org/10.1002/rcm.8972Liu X Su T Hsu YS Yu H Yang HS Jiang L Zhao Z Rapid identification and discrimination of methicillin-resistant Staphylococcus aureus strains via matrix-assisted laser desorption/ ionization time-of-flight mass spectrometry Rapid Commun Mass Spectrom 2021 Jan 30352e8972 https://doi.org/10.1002/rcm.897210.1002/rcm.897233053243Search in Google Scholar

Lutgring JD, Bittencourt C, McElvania TeKippe E, Cavuoti D, Hollaway R, Burd EM. Evaluation of the Accelerate Pheno system: results from two academic medical centers. J Clin Microbiol. 2018 Mar 26;56(4):e01672-17. https://doi.org/10.1128/jcm.01672-17Lutgring JD Bittencourt C McElvania TeKippe E Cavuoti D Hollaway R Burd EM Evaluation of the Accelerate Pheno system: results from two academic medical centers J Clin Microbiol 2018 Mar 26564e01672 17 https://doi.org/10.1128/jcm.01672-1710.1128/JCM.01672-17586984929386262Search in Google Scholar

Marschal M, Bachmaier J, Autenrieth I, Oberhettinger P, Willmann M, Peter S. Evaluation of the Accelerate Pheno system for fast identification and antimicrobial susceptibility testing from positive blood cultures in bloodstream infections caused by Gram-negative pathogens. J Clin Microbiol. 2017 Jul;55(7):2116–2126. https://doi.org/10.1128/jcm.00181-17Marschal M Bachmaier J Autenrieth I Oberhettinger P Willmann M Peter S Evaluation of the Accelerate Pheno system for fast identification and antimicrobial susceptibility testing from positive blood cultures in bloodstream infections caused by Gram-negative pathogens J Clin Microbiol 2017 Jul5572116 2126 https://doi.org/10.1128/jcm.00181-1710.1128/JCM.00181-17548391328446572Search in Google Scholar

Mather CA, Werth BJ, Sivagnanam S, SenGupta DJ, Butler-Wu SM. Rapid detection of vancomycin-intermediate Staphylococcus aureus by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol. 2016 Apr;54(4):883–890. https://doi.org/10.1128/jcm.02428-15Mather CA Werth BJ Sivagnanam S SenGupta DJ Butler-Wu SM Rapid detection of vancomycin-intermediate Staphylococcus aureus by matrix-assisted laser desorption ionization-time of flight mass spectrometry J Clin Microbiol 2016 Apr544883 890 https://doi.org/10.1128/jcm.02428-1510.1128/JCM.02428-15480991626763961Search in Google Scholar

McHugh MP, Parcell BJ, MacKenzie FM, Templeton KE; Scottish Microbiology and Virology Network Smvn Molecular Diagnostics Evaluation Group. Rapid molecular testing for Staphylococcus aureus bacteraemia improves clinical management. J Med Microbiol. 2020 Apr;69(4):552–557. https://doi.org/10.1099/jmm.0.001171McHugh MP Parcell BJ MacKenzie FM Templeton KE Scottish Microbiology and Virology Network Smvn Molecular Diagnostics Evaluation Group. Rapid molecular testing for Staphylococcus aureus bacteraemia improves clinical management J Med Microbiol 2020 Apr694552 557 https://doi.org/10.1099/jmm.0.00117110.1099/jmm.0.00117132141812Search in Google Scholar

Mitchell DH, Howden BP. Diagnosis and management of Staphylococcus aureus bacteraemia. Intern Med J. 2005 Dec;35 Suppl 2:S17–S24. https://doi.org/10.1111/j.1444-0903.2005.00977.xMitchell DH Howden BP Diagnosis and management of Staphylococcus aureus bacteraemia Intern Med J 2005 Dec;35 Suppl 2S17 S24 https://doi.org/10.1111/j.1444-0903.2005.00977.x10.1111/j.1444-0903.2005.00977.x16271058Search in Google Scholar

Mitteregger D, Barousch W, Nehr M, Kundi M, Zeitlinger M, Makristathis A, Hirschl AM. Neutralization of antimicrobial substances in new BacT/Alert FA and FN Plus blood culture bottles. J Clin Microbiol. 2013 May;51(5):1534–1540. https://doi.org/10.1128/jcm.00103-13Mitteregger D Barousch W Nehr M Kundi M Zeitlinger M Makristathis A Hirschl AM Neutralization of antimicrobial substances in new BacT/Alert FA and FN Plus blood culture bottles J Clin Microbiol 2013 May5151534 1540 https://doi.org/10.1128/jcm.00103-1310.1128/JCM.00103-13364790023486710Search in Google Scholar

Murdoch DR, Greenlees RL. Rapid identification of Staphylococcus aureus from BacT/ ALERT blood culture bottles by direct Gram stain characteristics. J Clin Pathol. 2004 Feb;57(2):199–201. https://doi.org/10.1136/jcp.2003.10538Murdoch DR Greenlees RL Rapid identification of Staphylococcus aureus from BacT/ ALERT blood culture bottles by direct Gram stain characteristics J Clin Pathol 2004 Feb572199 201 https://doi.org/10.1136/jcp.2003.1053810.1136/jcp.2003.10538177020214747451Search in Google Scholar

Neely LA, Audeh M, Phung NA, Min M, Suchocki A, Plourde D, Blanco M, Demas V, Skewis LR, Anagnostou T, et al. T2 magnetic resonance enables nanoparticle-mediated rapid detection of candidemia in whole blood. Sci Transl Med. 2013 Apr 24;5(182):182ra54. https://doi.org/10.1126/scitranslmed.3005377Neely LA Audeh M Phung NA Min M Suchocki A Plourde D Blanco M Demas V Skewis LR Anagnostou T et al T2 magnetic resonance enables nanoparticle-mediated rapid detection of candidemia in whole blood Sci Transl Med 2013 Apr 245182182ra54 https://doi.org/10.1126/scitranslmed.300537710.1126/scitranslmed.300537723616121Search in Google Scholar

Nguyen MH, Clancy CJ, Pasculle AW, Pappas PG, Alangaden G, Pankey GA, Schmitt BH, Rasool A, Weinstein MP, Widen R, et al. Performance of the T2Bacteria panel for diagnosing bloodstream infections: a diagnostic accuracy study. Ann Intern Med. 2019 Jun 18;170(12):845–852. https://doi.org/10.7326/m18-2772Nguyen MH Clancy CJ Pasculle AW Pappas PG Alangaden G Pankey GA Schmitt BH Rasool A Weinstein MP Widen R et al Performance of the T2Bacteria panel for diagnosing bloodstream infections: a diagnostic accuracy study Ann Intern Med 2019 Jun 1817012845 852 https://doi.org/10.7326/m18-277210.7326/M18-277231083728Search in Google Scholar

Oliveira K, Brecher SM, Durbin A, Shapiro DS, Schwartz DR, De Girolami PC, Dakos J, Procop GW, Wilson D, Hanna CS, et al. Direct identification of Staphylococcus aureus from positive blood culture bottles. J Clin Microbiol. 2003 Feb;41(2):889–891. https://doi.org/10.1128/jcm.41.2.889-891.2003Oliveira K Brecher SM Durbin A Shapiro DS Schwartz DR De Girolami PC Dakos J Procop GW Wilson D Hanna CS et al Direct identification of Staphylococcus aureus from positive blood culture bottles J Clin Microbiol 2003 Feb412889 891 https://doi.org/10.1128/jcm.41.2.889-891.200310.1128/JCM.41.2.889-891.200314967012574309Search in Google Scholar

O’Toole GA. Classic spotlight: how the Gram stain works. J Bacteriol. 2016 Nov 4;198(23):3128. https://doi.org/10.1128/jb.00726-16O’Toole GA Classic spotlight: how the Gram stain works J Bacteriol 2016 Nov 4198233128 https://doi.org/10.1128/jb.00726-1610.1128/JB.00726-16510589227815540Search in Google Scholar

Paolucci M, Landini MP, Sambri V. Conventional and molecular techniques for the early diagnosis of bacteraemia. Int J Antimicrob Agents. 2010 Dec;36(Suppl2):S6–S16. https://doi.org/10.1016/j.ijantimicag.2010.11.010Paolucci M Landini MP Sambri V Conventional and molecular techniques for the early diagnosis of bacteraemia Int J Antimicrob Agents 2010 Dec36Suppl2S6 S16 https://doi.org/10.1016/j.ijantimicag.2010.11.01010.1016/j.ijantimicag.2010.11.01021129933Search in Google Scholar

Parkes-Smith J, Bergh H, Harris PNA. Assessing the performance of the Cepheid Xpert in identifying and differentiating methicillin-susceptible Staphylococcus aureus and methicillin-resistant Staphylococcus aureus from blood culture bottles. Pathology. 2022 Sep 5:S0031-3025(22)00232-X. https://doi.org/10.1016/j.pathol.2022.07.006Parkes-Smith J Bergh H Harris PNA Assessing the performance of the Cepheid Xpert in identifying and differentiating methicillin-susceptible Staphylococcus aureus and methicillin-resistant Staphylococcus aureus from blood culture bottles Pathology 2022 Sep 5S0031 3025 (22)00232-X https://doi.org/10.1016/j.pathol.2022.07.00610.1016/j.pathol.2022.07.00636130845Search in Google Scholar

Peker N, Couto N, Sinha B, Rossen JW. Diagnosis of bloodstream infections from positive blood cultures and directly from blood samples: recent developments in molecular approaches. Clin Microbiol Infect. 2018 Sep;24(9):944–955. https://doi.org/10.1016/j.cmi.2018.05.007Peker N Couto N Sinha B Rossen JW Diagnosis of bloodstream infections from positive blood cultures and directly from blood samples: recent developments in molecular approaches Clin Microbiol Infect 2018 Sep249944 955 https://doi.org/10.1016/j.cmi.2018.05.00710.1016/j.cmi.2018.05.00729787889Search in Google Scholar

Pliakos EE, Andreatos N, Shehadeh F, Ziakas PD, Mylonakis E. The cost-effectiveness of rapid diagnostic testing for the diagnosis of bloodstream infections with or without antimicrobial stewardship. Clin Microbiol Rev. 2018 May 30;31(3):e00095-17. https://doi.org/10.1128/cmr.00095-17Pliakos EE Andreatos N Shehadeh F Ziakas PD Mylonakis E The cost-effectiveness of rapid diagnostic testing for the diagnosis of bloodstream infections with or without antimicrobial stewardship Clin Microbiol Rev 2018 May 30313e00095 17 https://doi.org/10.1128/cmr.00095-1710.1128/CMR.00095-17605684429848775Search in Google Scholar

Ponderand L, Pavese P, Maubon D, Giraudon E, Girard T, Landelle C, Maurin M, Caspar Y. Evaluation of Rapid Sepsityper® protocol and specific MBT-Sepsityper module (Bruker Daltonics) for the rapid diagnosis of bacteremia and fungemia by MALDI-TOF-MS. Ann Clin Microbiol Antimicrob. 2020 Dec 9;19(1):60. https://doi.org/10.1186/s12941-020-00403-wPonderand L Pavese P Maubon D Giraudon E Girard T Landelle C Maurin M Caspar Y Evaluation of Rapid Sepsityper® protocol and specific MBT-Sepsityper module (Bruker Daltonics) for the rapid diagnosis of bacteremia and fungemia by MALDI-TOF-MS Ann Clin Microbiol Antimicrob 2020 Dec 919160 https://doi.org/10.1186/s12941-020-00403-w10.1186/s12941-020-00403-w772719633298064Search in Google Scholar

Pritchard L, Baker C, Leggett J, Sehdev P, Brown A, Bayley KB. Increasing vancomycin serum trough concentrations and incidence of nephrotoxicity. Am J Med. 2010 Dec; 123(12):1143–1149. https://doi.org/10.1016/j.amjmed.2010.07.025Pritchard L Baker C Leggett J Sehdev P Brown A Bayley KB Increasing vancomycin serum trough concentrations and incidence of nephrotoxicity Am J Med 2010 Dec123121143 1149 https://doi.org/10.1016/j.amjmed.2010.07.02510.1016/j.amjmed.2010.07.02521183005Search in Google Scholar

Qian Q, Eichelberger K, Kirby JE. Rapid identification of Staphylococcus aureus directly from Bactec blood culture broth by the BinaxNOW S. aureus test. J Clin Microbiol. 2014 Jan; 52(1):319–320. https://doi.org/10.1128/jcm.02291-13Qian Q Eichelberger K Kirby JE Rapid identification of Staphylococcus aureus directly from Bactec blood culture broth by the BinaxNOW S aureus test. J Clin Microbiol 2014 Jan521319 320 https://doi.org/10.1128/jcm.02291-1310.1128/JCM.02291-13391147124153135Search in Google Scholar

Reddy K, Whitelaw A. Can the Xpert MRSA/SA BC assay be used as an antimicrobial stewardship tool? A prospective assay validation and descriptive impact assessment study in a South African setting. BMC Infect Dis. 2021 Feb 15;21(1):177. https://doi.org/10.1186/s12879-021-05857-7Reddy K Whitelaw A Can the Xpert MRSA/SA BC assay be used as an antimicrobial stewardship tool? A prospective assay validation and descriptive impact assessment study in a South African setting BMC Infect Dis 2021 Feb 15211177 https://doi.org/10.1186/s12879-021-05857-710.1186/s12879-021-05857-7788537333588782Search in Google Scholar

Roh KH, Kim JY, Kim HN, Lee HJ, Sohn JW, Kim MJ, Cho Y, Kim YK, Lee CK. Evaluation of BACTEC Plus aerobic and anaerobic blood culture bottles and BacT/Alert FAN aerobic and anaerobic blood culture bottles for the detection of bacteremia in ICU patients. Diagn Microbiol Infect Dis. 2012 Jul;73(3):239–242. https://doi.org/10.1016/j.diagmicrobio.2012.03.022Roh KH Kim JY Kim HN Lee HJ Sohn JW Kim MJ Cho Y Kim YK Lee CK Evaluation of BACTEC Plus aerobic and anaerobic blood culture bottles and BacT/Alert FAN aerobic and anaerobic blood culture bottles for the detection of bacteremia in ICU patients Diagn Microbiol Infect Dis 2012 Jul733239 242 https://doi.org/10.1016/j.diagmicrobio.2012.03.02210.1016/j.diagmicrobio.2012.03.02222541787Search in Google Scholar

Shimada J, Hayashi I, Inamatsu T, Ishida M, Iwai S, Kamidono S, Kurosawa H, Masaoka T, Matsumoto F, Monden M, et al. Clinical trial of in-situ hybridization method for the rapid diagnosis of sepsis. J Infect Chemother. 1999 Mar;5(1):21–31. https://doi.org/10.1007/s101560050004Shimada J Hayashi I Inamatsu T Ishida M Iwai S Kamidono S Kurosawa H Masaoka T Matsumoto F Monden M et al Clinical trial of in-situ hybridization method for the rapid diagnosis of sepsis J Infect Chemother 1999 Mar5121 31 https://doi.org/10.1007/s10156005000410.1007/s10156005000411810486Search in Google Scholar

Smith KP, Kang AD, Kirby JE. Automated interpretation of blood culture Gram stains by use of a deep convolutional neural network. J Clin Microbiol. 2018 Feb 22;56(3):e01521-17. https://doi.org/10.1128/jcm.01521-17Smith KP Kang AD Kirby JE Automated interpretation of blood culture Gram stains by use of a deep convolutional neural network J Clin Microbiol 2018 Feb 22563e01521 17 https://doi.org/10.1128/jcm.01521-1710.1128/JCM.01521-17582403029187563Search in Google Scholar

Srisrattakarn A, Panpru P, Tippayawat P, Chanawong A, Tavichakorntrakool R, Daduang J, Wonglakorn L, Lulitanond A. Rapid detection of methicillin-resistant Staphylococcus aureus in positive blood-cultures by recombinase polymerase amplification combined with lateral flow strip. PLoS One. 2022 Jun 30;17(6):e0270686. https://doi.org/10.1371/journal.pone.0270686Srisrattakarn A Panpru P Tippayawat P Chanawong A Tavichakorntrakool R Daduang J Wonglakorn L Lulitanond A Rapid detection of methicillin-resistant Staphylococcus aureus in positive blood-cultures by recombinase polymerase amplification combined with lateral flow strip PLoS One 2022 Jun 30176e0270686 https://doi.org/10.1371/journal.pone.027068610.1371/journal.pone.0270686924619135771885Search in Google Scholar

Sze DTT, Lau CCY, Chan TM, Ma ESK, Tang BSF. Comparison of novel rapid diagnostic of blood culture identification and antimicrobial susceptibility testing by Accelerate Pheno system and Bio-Fire FilmArray Blood Culture Identification and BioFire FilmArray Blood Culture Identification 2 panels. BMC Microbiol. 2021 Dec 18; 21(1):350. https://doi.org/10.1186/s12866-021-02403-ySze DTT Lau CCY Chan TM Ma ESK Tang BSF Comparison of novel rapid diagnostic of blood culture identification and antimicrobial susceptibility testing by Accelerate Pheno system and Bio-Fire FilmArray Blood Culture Identification and BioFire FilmArray Blood Culture Identification 2 panels BMC Microbiol 2021 Dec 18211350 https://doi.org/10.1186/s12866-021-02403-y10.1186/s12866-021-02403-y868425634922463Search in Google Scholar

Tsuchida S, Murata S, Miyabe A, Satoh M, Takiwaki M, Matsushita K, Nomura F. An improved in-house lysis-filtration protocol for bacterial identification from positive blood culture bottles with high identification rates by MALDI-TOF MS. J Microbiol Methods. 2018 May; 148:40–45. https://doi.org/10.1016/j.mimet.2018.03.014Tsuchida S Murata S Miyabe A Satoh M Takiwaki M Matsushita K Nomura F An improved in-house lysis-filtration protocol for bacterial identification from positive blood culture bottles with high identification rates by MALDI-TOF MS J Microbiol Methods 2018 May14840 45 https://doi.org/10.1016/j.mimet.2018.03.01410.1016/j.mimet.2018.03.01429608928Search in Google Scholar

Tsuzuki S, Yu J, Matsunaga N, Ohmagari N. Length of stay, hospitalisation costs and in-hospital mortality of methicillin-susceptible and methicillin-resistant Staphylococcus aureus bacteremia in Japan. Public Health. 2021 Sep;198:292–296. https://doi.org/10.1016/j.puhe.2021.07.046Tsuzuki S Yu J Matsunaga N Ohmagari N Length of stay, hospitalisation costs and in-hospital mortality of methicillin-susceptible and methicillin-resistant Staphylococcus aureus bacteremia in Japan Public Health 2021 Sep198292 296 https://doi.org/10.1016/j.puhe.2021.07.04610.1016/j.puhe.2021.07.04634507134Search in Google Scholar

Turner NA, Sharma-Kuinkel BK, Maskarinec SA, Eichen-berger EM, Shah PP, Carugati M, Holland TL, Fowler VG Jr. Methicillin-resistant Staphylococcus aureus: an overview of basic and clinical research. Nat Rev Microbiol. 2019 Apr; 17(4):203–218. https://doi.org/10.1038/s41579-018-0147-4Turner NA Sharma-Kuinkel BK Maskarinec SA Eichen-berger EM Shah PP Carugati M Holland TL Fowler VG Jr Methicillin-resistant Staphylococcus aureus: an overview of basic and clinical research Nat Rev Microbiol 2019 Apr174203 218 https://doi.org/10.1038/s41579-018-0147-410.1038/s41579-018-0147-4693988930737488Search in Google Scholar

Weaver AJ, Brandenburg KS, Sanjar F, Wells AR, Peacock TJ, Leung KP. Clinical utility of PNA-FISH for burn wound diagnostics: a noninvasive, culture-independent technique for rapid identification of pathogenic organisms in burn wounds. J Burn Care Res. 2019 Jun 21;40 (4):464–470. https://doi.org/10.1093/jbcr/irz047Weaver AJ Brandenburg KS Sanjar F Wells AR Peacock TJ Leung KP Clinical utility of PNA-FISH for burn wound diagnostics: a noninvasive, culture-independent technique for rapid identification of pathogenic organisms in burn wounds J Burn Care Res 2019 Jun 2140 4464 470 https://doi.org/10.1093/jbcr/irz04710.1093/jbcr/irz047658740630893424Search in Google Scholar

Wu KY, Yang TX. A novel improved Gram staining method based on the capillary tube. Pol J Microbiol. 2020 Dec;69(4):503–508. https://doi.org/10.33073/pjm-2020-043Wu KY Yang TX A novel improved Gram staining method based on the capillary tube Pol J Microbiol 2020 Dec694503 508 https://doi.org/10.33073/pjm-2020-04310.33073/pjm-2020-043781236033574878Search in Google Scholar

Zengin Canalp H, Bayraktar B. Direct rapid identification from positive blood cultures by MALDI-TOF MS: specific focus on turnaround times. Microbiol Spectr. 2021 Dec 22;9(3):e0110321. https://doi.org/10.1128/spectrum.01103-21Zengin Canalp H Bayraktar B Direct rapid identification from positive blood cultures by MALDI-TOF MS: specific focus on turnaround times Microbiol Spectr 2021 Dec 2293e0110321 https://doi.org/10.1128/spectrum.01103-2110.1128/spectrum.01103-21867291134908465Search in Google Scholar

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