Name of primer | Type | Sequence of primer |
---|---|---|
16S rRNA | Forward | 5’-GAACTGAGACACGGTCCAT-3’ |
16S rRNA | Reverse | 5’-GCCTCAGCGTCAGTTTTAGG-3’ |
LipL32 | Forward | 5’-ATCTCCGTTGCACTCTTTGC-3’ |
LipL32 | Reverse | 5’-ACCATCATCATCATCGTCCA-3’ |
Molecular detection | Max Score | Total Score | Query Cover | E Value | Per Ident | Accession |
---|---|---|---|---|---|---|
612 | 612 | 93% | 3e-171 | 99.41% | MN086353.1 | |
176 | 176 | 26% | 5e-40 | 100% | MN086356.1 | |
593 | 593 | 100% | 2e-166 | 100% | AB758752.1 |
Number of positive cases of saprophytic | Number of positive cases of pathogenic | Number of samples | Site |
---|---|---|---|
3 | 2 | 5 | Valiabad |
2 | 2 | 5 | Bagh e nazar |
0 | 1 | 5 | Mir shams-ol |
1 | 1 | 5 | Rud e posht |
1 | 0 | 5 | Alkaleh |
1 | 0 | 5 | Abkele sar |
0 | 1 | 5 | Lashkarak |
1 | 1 | 5 | Nematabad |
1 | 1 | 5 | Shiraj mahalleh-ye bozorg |
1 | 1 | 5 | Tilpordehsar |
11 (22%) | 10 (20%) | 50 | Total |