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Comparison of Rapid and Routine Methods of Identification and Antibiotic Susceptibility Testing of Microorganisms from Blood Culture Bottles


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Banerjee R, Teng CB, Cunningham SA, Ihde SM, Steckelberg JM, Moriarty JP, Shah ND, Mandrekar JN, Patel R. Randomized trial of rapid multiplex polymerase chain reaction-based blood culture identification and susceptibility testing. Clin Infect Dis. 2015 Oct 01;61(7):1071–1080. https://doi.org/10.1093/cid/civ447 Banerjee R Teng CB Cunningham SA Ihde SM Steckelberg JM Moriarty JP Shah ND Mandrekar JN Patel R. Randomized trial of rapid multiplex polymerase chain reaction-based blood culture identification and susceptibility testing . Clin Infect Dis. 2015 Oct 01 ; 61 ( 7 ): 1071 1080 . https://doi.org/10.1093/cid/civ447 10.1093/cid/civ447456090326197846 Search in Google Scholar

Becerra SC, Roy DC, Sanchez CJ, Christy RJ, Burmeister DM. An optimized staining technique for the detection of Gram positive and Gram negative bacteria within tissue. BMC Res Notes. 2016 Dec;9(1):216. https://doi.org/10.1186/s13104-016-1902-0 Becerra SC Roy DC Sanchez CJ Christy RJ Burmeister DM. An optimized staining technique for the detection of Gram positive and Gram negative bacteria within tissue . BMC Res Notes. 2016 Dec ; 9 ( 1 ): 216 . https://doi.org/10.1186/s13104-016-1902-0 10.1186/s13104-016-1902-0482882927071769 Search in Google Scholar

Beekmann SE, Diekema DJ, Chapin KC, Doern GV. Effects of rapid detection of blood stream infections on length of hospitalization and hospital charges. J Clin Microbiol. 2003;41(7):3119–3125. https://doi.org/10.1128/JCM.41.7.3119-3125.2003 Beekmann SE Diekema DJ Chapin KC Doern GV. Effects of rapid detection of blood stream infections on length of hospitalization and hospital charges . J Clin Microbiol. 2003 ; 41 ( 7 ): 3119 3125 . https://doi.org/10.1128/JCM.41.7.3119-3125.2003 10.1128/JCM.41.7.3119-3125.200316535912843051 Search in Google Scholar

Behera B, Mathur P, Gupta B. Blood culture gram stain, acridine orange stain and direct sensitivity-based antimicrobial therapy of bloodstream infection in patients with trauma. Indian J Med Microbiol. 2010;28(2):138–142. https://doi.org/10.4103/0255-0857.62491 Behera B Mathur P Gupta B. Blood culture gram stain, acridine orange stain and direct sensitivity-based antimicrobial therapy of bloodstream infection in patients with trauma . Indian J Med Microbiol. 2010 ; 28 ( 2 ): 138 142 . https://doi.org/10.4103/0255-0857.62491 10.4103/0255-0857.6249120404460 Search in Google Scholar

Caliendo AM, Hodinka RL. A CRISPR way to diagnose infectious diseases. N Engl J Med. 2017 Oct 26;377(17):1685–1687. https://doi.org/10.1056/NEJMcibr1704902 Caliendo AM Hodinka RL. A CRISPR way to diagnose infectious diseases . N Engl J Med. 2017 Oct 26 ; 377 ( 17 ): 1685 1687 . https://doi.org/10.1056/NEJMcibr1704902 10.1056/NEJMcibr170490229069564 Search in Google Scholar

Campigotto A, Goneau L, Matukas LM. Direct identification and antimicrobial susceptibility testing of microorganisms from positive blood cultures following isolation by lysis-centrifugation. Diagn Microbiol Infect Dis. 2018 Nov;92(3):189–193. https://doi.org/10.1016/j.diagmicrobio.2018.06.010 Campigotto A Goneau L Matukas LM. Direct identification and antimicrobial susceptibility testing of microorganisms from positive blood cultures following isolation by lysis-centrifugation . Diagn Microbiol Infect Dis. 2018 Nov ; 92 ( 3 ): 189 193 . https://doi.org/10.1016/j.diagmicrobio.2018.06.010 10.1016/j.diagmicrobio.2018.06.01030122510 Search in Google Scholar

Chen Y, Porter V, Mubareka S, Kotowich L, Simor AE. Rapid identification of bacteria directly from positive blood cultures by use of a serum separator tube, smudge plate preparation, and matrix-assisted laser desorption ionization–time of flight mass spectrometry. J Clin Microbiol. 2015 Oct;53(10):3349–3352. https://doi.org/10.1128/JCM.01493-15 Chen Y Porter V Mubareka S Kotowich L Simor AE. Rapid identification of bacteria directly from positive blood cultures by use of a serum separator tube, smudge plate preparation, and matrix-assisted laser desorption ionization–time of flight mass spectrometry . J Clin Microbiol. 2015 Oct ; 53 ( 10 ): 3349 3352 . https://doi.org/10.1128/JCM.01493-15 10.1128/JCM.01493-15457256226202115 Search in Google Scholar

Dodémont M, De Mendonça R, Nonhoff C, Roisin S, Denis O. Performance of the Verigene Gram-negative blood culture assay for rapid detection of bacteria and resistance determinants. J Clin Microbiol. 2014 Aug 01;52(8):3085–3087. https://doi.org/10.1128/JCM.01099-14 Dodémont M De Mendonça R Nonhoff C Roisin S Denis O. Performance of the Verigene Gram-negative blood culture assay for rapid detection of bacteria and resistance determinants . J Clin Microbiol. 2014 Aug 01 ; 52 ( 8 ): 3085 3087 . https://doi.org/10.1128/JCM.01099-14 10.1128/JCM.01099-14413612324899026 Search in Google Scholar

Durmaz G, Us T, Aydinli A, Kiremitci A, Kiraz N, Akgün Y. Optimum detection times for bacteria and yeast species with the BACTEC 9120 aerobic blood culture system: evaluation for a 5-year period in a Turkish university hospital. J Clin Microbiol. 2003 Feb 01;41(2):819–821. https://doi.org/10.1128/JCM.41.2.819-821.2003 Durmaz G Us T Aydinli A Kiremitci A Kiraz N Akgün Y. Optimum detection times for bacteria and yeast species with the BACTEC 9120 aerobic blood culture system: evaluation for a 5-year period in a Turkish university hospital . J Clin Microbiol. 2003 Feb 01 ; 41 ( 2 ): 819 821 . https://doi.org/10.1128/JCM.41.2.819-821.2003 10.1128/JCM.41.2.819-821.200314967412574291 Search in Google Scholar

Ferreira L, Sánchez-Juanes F, Porras-Guerra I, García-García MI, García-Sánchez JE, González-Buitrago JM, Muñoz-Bellido JL. Microorganisms direct identification from blood culture by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Clin Microbiol Infect. 2011 Apr;17(4):546–551. https://doi.org/10.1111/j.1469-0691.2010.03257.x Ferreira L Sánchez-Juanes F Porras-Guerra I García-García MI García-Sánchez JE González-Buitrago JM Muñoz-Bellido JL. Microorganisms direct identification from blood culture by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry . Clin Microbiol Infect. 2011 Apr ; 17 ( 4 ): 546 551 . https://doi.org/10.1111/j.1469-0691.2010.03257.x 10.1111/j.1469-0691.2010.03257.x20456452 Search in Google Scholar

Hill JT, Tran KDT, Barton KL, Labreche MJ, Sharp SE. Evaluation of the nanosphere Verigene BC-GN assay for direct identification of Gram-negative bacilli and antibiotic resistance markers from positive blood cultures and potential impact for more-rapid antibiotic interventions. J Clin Microbiol. 2014 Oct 01;52(10):3805–3807. https://doi.org/10.1128/JCM.01537-14 Hill JT Tran KDT Barton KL Labreche MJ Sharp SE. Evaluation of the nanosphere Verigene BC-GN assay for direct identification of Gram-negative bacilli and antibiotic resistance markers from positive blood cultures and potential impact for more-rapid antibiotic interventions . J Clin Microbiol. 2014 Oct 01 ; 52 ( 10 ): 3805 3807 . https://doi.org/10.1128/JCM.01537-14 10.1128/JCM.01537-14418777525122857 Search in Google Scholar

Huang AM, Newton D, Kunapuli A, Gandhi TN, Washer LL, Isip J, Collins CD, Nagel JL. Impact of rapid organism identification via matrix-assisted laser desorption/ionization time-of-flight combined with antimicrobial stewardship team intervention in adult patients with bacteremia and candidemia. Clin Infect Dis. 2013 Nov 1;57(9):1237–1245. https://doi.org/10.1093/cid/cit498 Huang AM Newton D Kunapuli A Gandhi TN Washer LL Isip J Collins CD Nagel JL. Impact of rapid organism identification via matrix-assisted laser desorption/ionization time-of-flight combined with antimicrobial stewardship team intervention in adult patients with bacteremia and candidemia . Clin Infect Dis. 2013 Nov 1 ; 57 ( 9 ): 1237 1245 . https://doi.org/10.1093/cid/cit498 10.1093/cid/cit49823899684 Search in Google Scholar

Jacobs MR, Mazzulli T, Hazen KC, Good CE, Abdelhamed AM, Lo P, Shum B, Roman KP, Robinson DC. Multicenter clinical evaluation of BacT/Alert virtuo blood culture system. J Clin Microbiol. 2017 Aug;55(8):2413–2421. https://doi.org/10.1128/JCM.00307-17 Jacobs MR Mazzulli T Hazen KC Good CE Abdelhamed AM Lo P Shum B Roman KP Robinson DC. Multicenter clinical evaluation of BacT/Alert virtuo blood culture system . J Clin Microbiol. 2017 Aug ; 55 ( 8 ): 2413 2421 . https://doi.org/10.1128/JCM.00307-17 10.1128/JCM.00307-17552741928539343 Search in Google Scholar

Kirn TJ, Mirrett S, Reller LB, Weinstein MP. Controlled clinical comparison of BacT/alert FA plus and FN plus blood culture media with BacT/alert FA and FN blood culture media. J Clin Microbiol. 2014 Mar 01;52(3):839–843. https://doi.org/10.1128/JCM.03063-13 Kirn TJ Mirrett S Reller LB Weinstein MP. Controlled clinical comparison of BacT/alert FA plus and FN plus blood culture media with BacT/alert FA and FN blood culture media . J Clin Microbiol. 2014 Mar 01 ; 52 ( 3 ): 839 843 . https://doi.org/10.1128/JCM.03063-13 10.1128/JCM.03063-13395778224371240 Search in Google Scholar

Lupetti A, Barnini S, Castagna B, Capria AL, Nibbering PH. Rapid identification and antimicrobial susceptibility profiling of Gram-positive cocci in blood cultures with the Vitek 2 system. Eur J Clin Microbiol Infect Dis. 2010 Jan;29(1):89–95. https://doi.org/10.1007/s10096-009-0825-2 Lupetti A Barnini S Castagna B Capria AL Nibbering PH. Rapid identification and antimicrobial susceptibility profiling of Gram-positive cocci in blood cultures with the Vitek 2 system . Eur J Clin Microbiol Infect Dis. 2010 Jan ; 29 ( 1 ): 89 95 . https://doi.org/10.1007/s10096-009-0825-2 10.1007/s10096-009-0825-2279742419902279 Search in Google Scholar

Machen A, Drake T, Wang YF. Same day identification and full panel antimicrobial susceptibility testing of bacteria from positive blood culture bottles made possible by a combined lysis-filtration method with MALDI-TOF VITEK mass spectrometry and the VITEK2 system. PLoS One. 2014;9(2):e87870. https://doi.org/10.1371/journal.pone.0087870 Machen A Drake T Wang YF. Same day identification and full panel antimicrobial susceptibility testing of bacteria from positive blood culture bottles made possible by a combined lysis-filtration method with MALDI-TOF VITEK mass spectrometry and the VITEK2 system . PLoS One. 2014 ; 9 ( 2 ): e87870 . https://doi.org/10.1371/journal.pone.0087870 10.1371/journal.pone.0087870392510224551067 Search in Google Scholar

Mamishi S, Pourakbari B, Ashtiani MH, Hashemi FB. Frequency of isolation and antimicrobial susceptibility of bacteria isolated from bloodstream infections at Children’s Medical Center, Tehran, Iran, 1996–2000. Int J Antimicrob Agents. 2005 Nov;26(5):373–379. https://doi.org/10.1016/j.ijantimicag.2005.08.004 Mamishi S Pourakbari B Ashtiani MH Hashemi FB. Frequency of isolation and antimicrobial susceptibility of bacteria isolated from bloodstream infections at Children’s Medical Center, Tehran, Iran, 1996–2000 . Int J Antimicrob Agents. 2005 Nov ; 26 ( 5 ): 373 379 . https://doi.org/10.1016/j.ijantimicag.2005.08.004 10.1016/j.ijantimicag.2005.08.00416213124 Search in Google Scholar

Mancini N, Infurnari L, Ghidoli N, Valzano G, Clementi N, Burioni R, Clementi M. Potential impact of a microarray-based nucleic acid assay for rapid detection of Gram-negative bacteria and resistance markers in positive blood cultures. J Clin Microbiol. 2014 Apr 01;52(4):1242–1245. https://doi.org/10.1128/JCM.00142-14 Mancini N Infurnari L Ghidoli N Valzano G Clementi N Burioni R Clementi M. Potential impact of a microarray-based nucleic acid assay for rapid detection of Gram-negative bacteria and resistance markers in positive blood cultures . J Clin Microbiol. 2014 Apr 01 ; 52 ( 4 ): 1242 1245 . https://doi.org/10.1128/JCM.00142-14 10.1128/JCM.00142-14399346924478405 Search in Google Scholar

Morrell M, Fraser VJ, Kollef MH. Delaying the empiric treatment of candida bloodstream infection until positive blood culture results are obtained: a potential risk factor for hospital mortality. Antimicrob Agents Chemother. 2005 Sep 01;49(9):3640–3645. https://doi.org/10.1128/AAC.49.9.3640-3645.2005 Morrell M Fraser VJ Kollef MH. Delaying the empiric treatment of candida bloodstream infection until positive blood culture results are obtained: a potential risk factor for hospital mortality . Antimicrob Agents Chemother. 2005 Sep 01 ; 49 ( 9 ): 3640 3645 . https://doi.org/10.1128/AAC.49.9.3640-3645.2005 10.1128/AAC.49.9.3640-3645.2005119542816127033 Search in Google Scholar

Nataraj G, Surase PV, Pattamadai K, Mehta PR, Pazare AR, Agarwal MC, Nanavati RN. An appropriately performed conventional blood culture can facilitate choice of therapy in resource-constrained settings-comparison with BACTEC 9050. J Postgrad Med. 2016;62(4):228–234. https://doi.org/10.4103/0022-3859.184958 Nataraj G Surase PV Pattamadai K Mehta PR Pazare AR Agarwal MC Nanavati RN. An appropriately performed conventional blood culture can facilitate choice of therapy in resource-constrained settings-comparison with BACTEC 9050 . J Postgrad Med. 2016 ; 62 ( 4 ): 228 234 . https://doi.org/10.4103/0022-3859.184958 10.4103/0022-3859.184958510520727763479 Search in Google Scholar

Schulthess B, Bloemberg GV, Zbinden R, Böttger EC, Hombach M. Evaluation of the Bruker MALDI Biotyper for Identification of Gram-Positive Rods: Development of a Diagnostic Algorithm for the Clinical Laboratory. J Clin Microbiol. 2014;52(4):1089–1097. https://doi.org/10.1128/JCM.02399-13 Schulthess B Bloemberg GV Zbinden R Böttger EC Hombach M. Evaluation of the Bruker MALDI Biotyper for Identification of Gram-Positive Rods: Development of a Diagnostic Algorithm for the Clinical Laboratory . J Clin Microbiol. 2014 ; 52 ( 4 ): 1089 1097 . https://doi.org/10.1128/JCM.02399-13 10.1128/JCM.02399-13399348624452159 Search in Google Scholar

Sothoron C, Ferreira J, Guzman N, Aldridge P, McCarter YS, Jankowski CA. A stewardship approach to optimize antimicrobial therapy through use of a rapid microarray assay on blood cultures positive for gram-negative bacteria. J Clin Microbiol. 2015 Nov; 53(11):3627–3629. https://doi.org/10.1128/JCM.02161-15 Sothoron C Ferreira J Guzman N Aldridge P McCarter YS Jankowski CA. A stewardship approach to optimize antimicrobial therapy through use of a rapid microarray assay on blood cultures positive for gram-negative bacteria . J Clin Microbiol. 2015 Nov ; 53 ( 11 ): 3627 3629 . https://doi.org/10.1128/JCM.02161-15 10.1128/JCM.02161-15460967426292308 Search in Google Scholar

Stevenson LG, Drake SK, Murray PR. Rapid identification of bacteria in positive blood culture broths by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol. 2010 Feb 01;48(2):444–447. https://doi.org/10.1128/JCM.01541-09 Stevenson LG Drake SK Murray PR. Rapid identification of bacteria in positive blood culture broths by matrix-assisted laser desorption ionization-time of flight mass spectrometry . J Clin Microbiol. 2010 Feb 01 ; 48 ( 2 ): 444 447 . https://doi.org/10.1128/JCM.01541-09 10.1128/JCM.01541-09281559819955282 Search in Google Scholar

Tian Y, Zheng B, Wang B, Lin Y, Li M. Rapid identification and multiple susceptibility testing of pathogens from positive-culture sterile body fluids by a combined MALDI-TOF mass spectrometry and Vitek susceptibility system. Front Microbiol. 2016 Apr 20;7:523. https://doi.org/10.3389/fmicb.2016.00523 Tian Y Zheng B Wang B Lin Y Li M. Rapid identification and multiple susceptibility testing of pathogens from positive-culture sterile body fluids by a combined MALDI-TOF mass spectrometry and Vitek susceptibility system . Front Microbiol. 2016 Apr 20 ; 7 : 523 . https://doi.org/10.3389/fmicb.2016.00523 10.3389/fmicb.2016.00523483714927148212 Search in Google Scholar

Tuite N, Reddington K, Barry T, Zumla A, Enne V. Rapid nucleic acid diagnostics for the detection of antimicrobial resistance in Gram-negative bacteria: is it time for a paradigm shift? J Antimicrob Chemother. 2014 Jul 01;69(7):1729–1733. https://doi.org/10.1093/jac/dku083 Tuite N Reddington K Barry T Zumla A Enne V. Rapid nucleic acid diagnostics for the detection of antimicrobial resistance in Gram-negative bacteria: is it time for a paradigm shift? J Antimicrob Chemother. 2014 Jul 01 ; 69 ( 7 ): 1729 1733 . https://doi.org/10.1093/jac/dku083 10.1093/jac/dku08324677160 Search in Google Scholar

Yiş R. Evaluation of blood cultures in a children’s hospital located in Southeastern Anatolia. Turk Pediatri Ars. 2015 Jul 20;50(2):102–107. https://doi.org/10.5152/tpa.2015.2593 Yiş R. Evaluation of blood cultures in a children’s hospital located in Southeastern Anatolia . Turk Pediatri Ars. 2015 Jul 20 ; 50 ( 2 ): 102 107 . https://doi.org/10.5152/tpa.2015.2593 10.5152/tpa.2015.2593452398226265894 Search in Google Scholar

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Life Sciences, Microbiology and Virology