Otwarty dostęp

A study on the phylogeny and phylogeography of a marine cosmopolite diatom from the southern Black Sea


Zacytuj

[1] Akaike, H. (1974). A new look at the statistical model identification. IEEE Trans Automat Cont. 19:716–723. http://dx.doi.org/10.1109/TAC.1974.110070510.1109/TAC.1974.1100705 Search in Google Scholar

[2] Amato, A. & Montresor M. (2008). Morphology, phylogeny, and sexual cycle of Pseudo-nitzschia mannii sp. nov. (Bacillariophyceae): a pseudo-cryptic species within P. pseudodelicatissima complex. Phycol. 47: 487–497. DOI: http://dx.doi.org/10.2216/07-92.1. http://dx.doi.org/10.2216/07-92.110.2216/07-92.1 Search in Google Scholar

[3] Baytut, O., Moestrup Ø., Lundholm N. & Gonulol A. (2013). Contributions to the diatom flora of the Black Sea revealing from ultrastructural and molecular tools: new records of Skeletonema marinoi Sarno & Zingone, Pseudo-nitzschia pungens (Grunow ex Cleve) G.R. Hasle var. aveirensis Lundholm, Churro, Carreira & Calado and Chaetoceros tenuissimus Meunier for Marine Flora of Turkey. Nova Hedwigia. 96(3/4): 427–444. DOI: http://dx.doi.org/10.1127/0029-5035/2013/0093. http://dx.doi.org/10.1127/0029-5035/2013/009310.1127/0029-5035/2013/0093 Search in Google Scholar

[4] Bates, S.S, Bird C.J., De Freitas, A.S.W., Foxall M., Hanic L.A. et al. (1989). Pennate diatom Nitzschia pungens as the primary source of domoic acid, a toxin in shellfish from eastern Prince Edward Island, Canada. Can. J. Fish. Aquat. Sci. 46: 1203–1215. DOI: 10.1139/f89 156. http://dx.doi.org/10.1139/f89-156 Search in Google Scholar

[5] Broecker, W.S. (1991). The great ocean conveyor. Oceanography. 4:79–89. http://dx.doi.org/10.5670/oceanog.1991.0710.5670/oceanog.1991.07 Search in Google Scholar

[6] Casteleyn, G., Chepurnov V.A., Leliaert F., Mann D.G., Bates S.S. et al. (2008). Pseudo-nitzschia pungens (Bacillariophyceae): A cosmopolitan diatom species? Harmful Algae. 7: 241–257. DOI: http://dx.doi.org/10.1016/j.hal.2007.08.004. http://dx.doi.org/10.1016/j.hal.2007.08.00410.1016/j.hal.2007.08.004 Search in Google Scholar

[7] Casteleyn, G., Leliaert F, Backeljau T., Deeber A.E., Kotaki Y. et al. (2010). Limits to gene flow in a cosmopolitan marine planktonic diatom. PNAS. 107:12952–12957. DOI: 10.1073/pnas.1001380107. http://dx.doi.org/10.1073/pnas.100138010710.1073/pnas.1001380107291996920615950 Search in Google Scholar

[8] Cermeño, P. & Falkowski P.G. (2009). Controls on diatom biogeography in the ocean. Science 325:1539–1541. DOI: 10.1126/science.1174159. http://dx.doi.org/10.1126/science.117415910.1126/science.117415919762642 Search in Google Scholar

[9] Churro, C.I., Carreira Cátia C., Rodrigues F.J., Craveiro S.C., Calado A.J. et al. (2009). Diversity and abundance of potentially toxic Pseudo-nitzschia Peragallo in Aveiro coastal lagoon, Portugal and description of a new variety, P. pungens var. aveirensis var. nov. Diatom Res. 24: 35–62. DOI:10.1080/0269249X.2009.9705782 http://dx.doi.org/10.1080/0269249X.2009.970578210.1080/0269249X.2009.9705782 Search in Google Scholar

[10] Clement, M., Posada D. & Crandall K.A. (2000). TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9: 1657–1659. http://dx.doi.org/10.1046/j.1365-294x.2000.01020.x10.1046/j.1365-294x.2000.01020.x11050560 Search in Google Scholar

[11] Hall, T.A. (1999). BioEdit: a user friendly biological sequence alignment editor and analysis program for windows 95-98, NT. Nucleic Acids Symposium Series. 41: 95–98. Search in Google Scholar

[12] Hasle, G.R. (1972). Fragilariopsis Hustedt as a section of the genus Nitzschia Hassall. Nova Hedwigia. 39: 111–119. Search in Google Scholar

[13] Hasle, G.R. (1994). Pseudo-nitzschia as a genus distinct from Nitzschia (Bacillariophyceae). J. Phycol. 30: 1036–1039. http://dx.doi.org/10.1111/j.0022-3646.1994.01036.x10.1111/j.0022-3646.1994.01036.x Search in Google Scholar

[14] Ki, J., Jang G.Y. & Han M. (2004). Integrated Method for Single-Cell DNA Extraction, PCR Amplification, and Sequencing of Ribosomal DNA from Harmful Dinoflagellates Cochlodinium polykrikoides and Alexandrium catenella. Mar. Biotechnol. 6: 587–593. DOI:10.1007/s10126-004-1700-x. http://dx.doi.org/10.1007/s10126-004-1700-x10.1007/s10126-004-1700-x Search in Google Scholar

[15] Lefebvre, K.A., Powell C.L., Busman M., Doucette G.J., Moeller P.D.R., et al. (1999). Detection of domoic acid in northern anchovies and California sea lions associated with an unusual mortality event. Nat. Toxins. 7: 85–92. http://dx.doi.org/10.1002/(SICI)1522-7189(199905/06)7:3<85::AID-NT39>3.0.CO;2-Q10.1002/(SICI)1522-7189(199905/06)7:3<85::AID-NT39>3.0.CO;2-Q Search in Google Scholar

[16] Librado, P. & Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25:1451–1452. DOI:10.1093/bioinformatics/btp187. http://dx.doi.org/10.1093/bioinformatics/btp18710.1093/bioinformatics/btp187 Search in Google Scholar

[17] Lundholm, N., Daugbjerg N. & Moestrup Ø. (2002). Phylogeny of the Bacillariaceae with emphasis on the genus Pseudo-nitzschia (Bacillariophyceae) based on partial LSU rDNA. Eur. J. Phycol. 37: 115–134. DOI:10.1017/S096702620100 347X. http://dx.doi.org/10.1017/S096702620100347X Search in Google Scholar

[18] Lundholm, N., Moestrup Ø., Hasle G.R. & Hoef-Emden K. (2003). A study of the Pseudo-nitzschia Pseudodelicatissima/cuspidata complex (Bacillariophyceae): what is P. pseudodelicatissima. Eur. J. Phycol. 39: 797–813. DOI: 10.1046/j.15298817.2003.02031.x. Search in Google Scholar

[19] Lundholm, N., Moestrup Ø., Kotaki Y., Hoef-Emden K., Scholin C. et al. (2006). Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima-complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses. J. Phycol. 42: 464–481. DOI: 10.1111/j.1529-8817.2006.00211.x. http://dx.doi.org/10.1111/j.1529-8817.2006.00211.x10.1111/j.1529-8817.2006.00211.x Search in Google Scholar

[20] Norris, R.D. (2000). Pelagic species diversity, biogeography, and evolution. Paleobiology. 26:236–258. http://dx.doi.org/10.1666/0094-8373(2000)26[236:PSDBAE]2.0.CO;2 Search in Google Scholar

[21] Nunn, G.B., Theisen B.F., Christensen B., Arctander P. (1996). Simplicity-correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the crustacean order Isopoda. J. Mol. Evol. 42: 211–223. http://dx.doi.org/10.1007/BF0219884710.1007/BF02198847 Search in Google Scholar

[22] Posada, D. (2008). Model test: phylogenetic model averaging. Mol. Biol. Evol. 25: 1253–56. DOI: 10.1093/molbev/msn083. http://dx.doi.org/10.1093/molbev/msn08310.1093/molbev/msn083 Search in Google Scholar

[23] Quijano-Scheggia, S.I., Garcés E., Lundholm N., Moestrup Ø., Andree K., et al. (2009). Morphology, physiology, molecular phylogeny and sexual compatibility of the cryptic Pseudo-nitzschia delicatissima complex (Bacillariophyta), including the description of P. arenysensis sp. nov. Phycologia. 48: 492–509. DOI: http://dx.doi.org/10.2216/08-21.1. http://dx.doi.org/10.2216/08-21.110.2216/08-21.1 Search in Google Scholar

[24] Ronquist, F. & Huelsenbeck J.P. (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19: 1572–1574. DOI: 10.1093/bioinformatics/btg180. http://dx.doi.org/10.1093/bioinformatics/btg18010.1093/bioinformatics/btg180 Search in Google Scholar

[25] Round, F.E., Crawford R.M. & Mann D.G. (1990). The Biology of Diatoms. Cambridge: Cambridge University Press. Search in Google Scholar

[26] Scholin, C.A., Herzog M., Sogin M. & Anderson D.M. (1994). Identification of group- and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). II. Sequence analysis of a fragment of the LSU rDNA. J. Phycol. 30: 999–1011. DOI: 10.1111/j.0022-3646.1994.00999.x. http://dx.doi.org/10.1111/j.0022-3646.1994.00999.x10.1111/j.0022-3646.1994.00999.x Search in Google Scholar

[27] Scholin, C.A., Gulland F., Doucette G.J., Benson S., Busman M., et al. (2000). Mortality of sea lions along the central California coast linked to a toxic diatom bloom. Nature. 403: 80–84. DOI: 10.1038/47481. http://dx.doi.org/10.1038/4748110.1038/47481 Search in Google Scholar

[28] Templeton, A.R., Crandall K.A. & Sing C.F. (1992). A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics. 132: 619–633. Search in Google Scholar

[29] Thompson, J. D., Gibson T. J., Plewniak F., Jeanmougin F. & Higgins D. G. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25(24): 4876–4882. DOI:10.1093/nar/25.24.4876. http://dx.doi.org/10.1093/nar/25.24.487610.1093/nar/25.24.48761471489396791 Search in Google Scholar

[30] Work, T.M., Beale A.M., Fritz L., Quilliam M.A., Silver M., et al. (1993). Domoic acid intoxication of brown pelicans and cormorants in Santa Cruz, California. In T.J. Smayda & Y. Shimizu (Eds.), Toxic Phytoplankton Blooms in the Sea (pp 643–649).Amsterdam: Elsevier. Search in Google Scholar

eISSN:
1897-3191
Język:
Angielski
Częstotliwość wydawania:
4 razy w roku
Dziedziny czasopisma:
Chemistry, other, Geosciences, Life Sciences