1. bookTom 30 (2022): Zeszyt 1 (June 2022)
Informacje o czasopiśmie
License
Format
Czasopismo
eISSN
2061-9588
Pierwsze wydanie
08 Oct 2013
Częstotliwość wydawania
2 razy w roku
Języki
Angielski
Otwarty dostęp

Genetic polymorphism in the mitochondrial D-loop of Oriental White-backed Vultures (Gyps bengalensis)

Data publikacji: 30 Jun 2022
Tom & Zeszyt: Tom 30 (2022) - Zeszyt 1 (June 2022)
Zakres stron: 135 - 145
Otrzymano: 04 Nov 2021
Przyjęty: 18 Mar 2022
Informacje o czasopiśmie
License
Format
Czasopismo
eISSN
2061-9588
Pierwsze wydanie
08 Oct 2013
Częstotliwość wydawania
2 razy w roku
Języki
Angielski
Abstract

Vultures are among nature’s most successful scavengers, providing tractable models for ecological, economic, and cultural studies. Asian vultures have undergone dramatic declines of 90–99% in the subcontinent due to consequences of poisoning drugs, thereby being at a high risk of extinction. In Pakistan, surveys conducted previously focused mostly the cause of decline and breeding strategies only. Genetic profiling of vultures was still unmapped that could play a particular role in conservation endeavors and let researchers to genetically label individuals of threatened or endangered species. In this study, we examined genetic diversity and molecular phylogeny of Oriental White-backed Vultures by analyzing mitochondrial DNA (mtDNA) sequences. Genetic polymorphism was detected among individuals, and, on that basis, phylogenetic analysis was conducted through Bayesian analysis of DNA sequences using MCMC. Using multiple sequence alignment, two mutations, transversion T>G and transition G>A, were observed at nucleotide positions 1 and 2, respectively. Similarly, T/C heterozygosity at two positions, 53 and 110, and one heterozygous T/G locus at 130 position were also observed. The reference sequence, along with other samples of V1, V6, V7 and V9, was placed into a clade, while V2, V5, V11, V3, V4 and V10 samples were grouped into a two clade.

Keywords

Acharya, R., Cuthbert, R., Baral, H. S. & Shah, K. B. 2009. Rapid population declines of Himalayan Griffon Gyps himalayensis in Upper Mustang, Nepal. – Bird Conservation International 19(1): 99–107. DOI: 10.1017/S0959270908007417Otwórz DOISearch in Google Scholar

Bandelt, H. J., Lahermo, P., Richards, M. & Macaulay, V. 2001. Detecting errors in mtDNA data by phylogenetic analysis. – International Journal of Legal Medicine 115(2): 64–69. DOI: 10.1007/s00414010022811724431Otwórz DOISearch in Google Scholar

BirdLife International 2007. Species factsheet: Gyps coprotheres. – http://www.birdlife.org on 21/6/2007Search in Google Scholar

Buechley, E. R. & Şekercioğlu, Ç. H. 2016. The avian scavenger crisis: looming extinctions, trophic cascades, and loss of critical ecosystem functions. – Biological Conservation 198: 220–228. DOI: 10.1016/j.biocon.2016.04.001Otwórz DOISearch in Google Scholar

Chaudhary, A., Subedi, T. R., Giri, J. B., Baral, H. S., Bidari, B., Subedi, H. E. M. & Cuthbert, R. J. 2012. Population trends of Critically Endangered Gyps vultures in the lowlands of Nepal. – Bird Conservation International 22(3): 270–278. DOI: 10.1017/S0959270911000426.Otwórz DOISearch in Google Scholar

Choisy, J. P. 2013. The vultures at the crossroads of biodiversity, politics, tourism, the environment, and agriculture. – Vulture News 63: 15–39. DOI: 10.4314/vulnew.v63i1.2Otwórz DOISearch in Google Scholar

Cortés-Avizanda, A., Blanco, G., DeVault, T. L., Markandya, A., Virani, M. Z., Brandt, J. & Donázar, J. A. 2016. Supplementary feeding and endangered avian scavengers: benefits, caveats, and controversies. – Frontiers in Ecology and the Environment 14(4): 191–199. DOI: 10.1002/fee.1257Otwórz DOISearch in Google Scholar

Cuthbert, R., Taggart, M. A., Prakash, V., Saini, M., Swarup, D., Upreti, S., Mateo, R., Chakraborty, S. S., Deori, P. & Green, R. E. 2011. Effectiveness of action in India to reduce exposure of Gyps vultures to the toxic veterinary drug diclofenac. – PLoS ONE 6(5): e19069. DOI: 10.1371/journal.pone.0019069309275421589920Otwórz DOISearch in Google Scholar

Frankham, R. 2005. Resolving the genetic paradox in invasive species. – Heredity 94(4): 385–385. DOI: 10.1038/sj.hdy.680063415602569Otwórz DOISearch in Google Scholar

García, C. B. & Arruga, M. V. 2006. Comparative genetic analysis between Red-legged Partridges (Alectoris rufa) and Chukar Partridges (Alectoris chukar): Identification of single-nucleotide polymorphisms. – Animal Research 55: 335–342. DOI: 10.1051/animres:2006015Otwórz DOISearch in Google Scholar

Galligan, T. H., Bhusal, K. P., Paudel, K., Chapagain, D., Joshi, A. B., Chaudhary, I. P., Chaudhary, A., Baral, H. S., Cuthbert, R. J. & Green, R. E. 2020. Partial recovery of Critically Endangered Gyps vulture populations in Nepal. – Bird Conservation International 30: 87–102. DOI: 10.1076SO959270919000169Otwórz DOISearch in Google Scholar

Geyer, C. J. 1991. Markov chain Monte Carlo maximum likelihood. – In: Kerimidas, E. M. (ed.) Computing Science and Statistics: Proceedings of the 23rd Symposium on the Interface Fairfax Station: Interface Foundation, pp. 156–163.Search in Google Scholar

Gilbert, M., Virani, M. Z., Watson, R. T., Oaks, J. L., Benson, P. C., Khan, A. A., Ahmed, S., Chaudhry, J., Arshad, M., Mahmood, S. & Shah, Q. A. 2002. Breeding and mortality of Oriental White-backed Vulture Gyps bengalensis in Punjab Province, Pakistan. – Bird Conservation International 12(4): 311–326. DOI: 10.1017/S0959270902002198[Otwórz DOISearch in Google Scholar

Gilbert, M., Watson, R. T., Virani, M. Z., Oaks, J. L., Ahmed, S., Chaudhry, M. J. I., Arshad, M., Mahmood, S., Ali, A. & Khan, A. A. 2004. Rapid population declines and mortality clusters in three Oriental White-backed Vulture Gyps bengalensis colonies in Pakistan due to diclofenac poisoning. – Oryx 40(4): 388–399. DOI: 10.1080/00063657.2011.588685Otwórz DOISearch in Google Scholar

Godoy, J. A., Negro, J. J., Hiraldo, F. & Donázar, J. A. 2004. Phylogeography, genetic structure and diversity in the endangered Bearded Vulture (Gypaetus barbatus, L.) as revealed by mitochondrial DNA. – Molecular Ecology 13(2): 371–390. DOI: 10.1046/j.1365-294X.2003.02075.xOtwórz DOISearch in Google Scholar

Green, R. E., Taggart, M. A., Senacha, K. R., Raghavan, B., Pain, D. J., Jhala, Y. & Cuthbert, R. 2007. Rate of decline of the Oriental White-backed Vulture population in India estimated from a survey of diclofenac residues in carcasses of ungulates. – PLoS ONE 2(8): e686. DOI: 10.1371/journal.pone.0000686.193015617668064Otwórz DOISearch in Google Scholar

Hailer, F., Helander, B., Folkestad, A. O., Ganusevich, S. A., Garstad, S., Hauff, P., Koren, C., Nygård, T., Volke, V., Vilà, C. & Ellegren, H. 2006. Bottlenecked but long-lived: high genetic diversity retained in White-tailed Eagles upon recovery from population decline. – Biology Letters 2(2): 316–319.10.1098/rsbl.2006.0453161892117148392Search in Google Scholar

Harris, R. J. 2013. The conservation of Accipitridae vultures of Nepal: a review. – Journal of Threatened Taxa 5(2): 3603–3619. DOI: 10.11609/JoTT.o2816.3603-19Otwórz DOISearch in Google Scholar

Johnson, J. A., Gilbert, M., Virani, M. Z., Asim, M. & Mindell, D. P. 2008. Temporal genetic analysis of the critically endangered Oriental White-backed Vulture in Pakistan. – Biological Conservation 141(9): 2403–2409. DOI: 10.1016/j.biocon.2008.07.001Otwórz DOISearch in Google Scholar

Librado, P. & Rozas, J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. – Bioinformatics 25(11): 1451–1452. DOI: 10.1093/bioinformatics/btp18719346325Otwórz DOISearch in Google Scholar

Marinković, S. & Karadžar, B. 2008. Griffon Vulture Gyps fulvus Hablizl 1883. – Birds of Prey Protection Found, Special Ed., Vol. 1. – Institute for Biological Research “Siniša Stanković”, BelgradeSearch in Google Scholar

Maudet, C., Miller, C., Bassano, B., Breitenmoser-Würsten, C., Gauthier, D., Obexer-Ruff, G., Michallet, J., Taberlet, P. & Luikart, G. 2002. Microsatellite DNA and recent statistical methods in wildlife conservation management: applications in Alpine Ibex [Capra ibex (ibex)]. – Molecular Ecology 11(3): 421–436. DOI: 10.1046/j.0962-1083.2001.01451.x11928708Otwórz DOISearch in Google Scholar

Mukherjee, A., Galligan, T. H., Prakash, V., Paudel, K., Khan, U., Prakash, S. & Bowden, C. 2014. Vulture safe zones to save Gyps vultures in South Asia. – Mistnet 15(3): 4–21.Search in Google Scholar

Mullis, K., Faloona, F., Scharf, S., Saiki, R. K., Horn, G. T. & Erlich, H. 1986. Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. – Cold Spring Harbor Symposia on Quantitative Biology 51: 263–273. DOI: 10.1101/sqb.1986.051.01.0323472723Otwórz DOISearch in Google Scholar

Murn, C., Khan, U. & Farid, F. 2008. Vulture populations in Pakistan and the Gyps vulture restoration project. – Vulture News 58: 35–43.Search in Google Scholar

Murn, C., Saeed, U., Khan, U. & Iqbal, S. 2015. Population and spatial breeding dynamics of a Critically Endangered Oriental White-backed Vulture Gyps bengalensis colony in Sindh Province, Pakistan. – Bird Conservation International 25(4): 415–425. DOI: 10.1017/S0959270914000483Otwórz DOISearch in Google Scholar

Naidoo, V. & Swan, G. E. 2009. Diclofenac toxicity in Gyps vulture is associated with decreased uric acid excretion and not renal portal vasoconstriction. – Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology 149(3): 269–274. DOI: 10.1016/j.cbpc.2008.07.014Otwórz DOISearch in Google Scholar

Oaks, J. L., Rideout, B. A., Gilbert, M., Watson, R. T., Virani, M. Z. & Khan, A. A. 2001. Summary of diagnostic investigation into vulture mortality: Punjab Province, Pakistan, 2000–2001. – In: Katzner, T. & Parry-Jones, J. (eds.) Reports from the workshop on Indian Gyps Vultures. – 4th Eurasian Congress on Raptors, Sevilla, Spain, September 2001.Search in Google Scholar

Ogada, D. L., Keesing, F. & Virani, M. Z. 2012. Dropping dead: causes and consequences of vulture population declines worldwide. – Annals of the New YorkAcademy of Sciences 1249: 57–71. DOI: 10.1111/j.1749-6632.2011.06293.x.Otwórz DOISearch in Google Scholar

Pain, D. J., Bowden, C. G., Cunningham, A. A., Cuthbert, R., Das, D., Gilbert, M. & Green, R. E. 2008. The race to prevent the extinction of South Asian vultures. – Bird Conservation International 18(S1): S30–S48. DOI: 10.1017/S0959270908000324Otwórz DOISearch in Google Scholar

Pfeiffer, M. B., Venter, J. A. & Downs, C. T. 2015. Identifying anthropogenic threats to Cape Vultures Gyps coprotheres using community perceptions in communal farmland, Eastern Cape Province, South Africa. – Bird Conservation International 25(3): 353–365. DOI: 10.1017/S0959270914000148Otwórz DOISearch in Google Scholar

Poulakakis, N., Antoniou, A., Mantziou, G., Parmakelis, A., Skartsi, T., Vasilakis, D., Elorriaga, J., De La Puente, J., Gavashelishvili, A., Ghasabyan, M., Katzner, T., McGrady, M., Batbayar, N., Fuller, M. & Natsagdor, J. T. 2008. Population structure, diversity, and phylogeography in the near-threatened Eurasian Black Vultures Aegypius monachus (Falconiformes; Accipitridae) in Europe: insights from microsatellite and mitochondrial DNA variation. – Biological Journal of the Linnean Society 95(4): 859–872. DOI: 10.1111/j.1095-8312.2008.01099.xOtwórz DOISearch in Google Scholar

Prakash, V. 1999. Status of vultures in Keoladeo National Park, Bharatpur, Rajasthan, with special reference to population crash in Gyps species. – The Journal of Bombay Natural History Society 96: 365–378.Search in Google Scholar

Prakash, V., Green, R. E., Pain, D. J., Ranade, S. P. & Saravanan, S. 2007. Recent changes in populations of resident Gyps vultures in India. – Journal of the Bombay Natural History Society 104: 129–135. DOI: 10.1017/S0959270917000545.Otwórz DOISearch in Google Scholar

Prakash, V., Pain, D. J., Cunningham, A. A., Donald, P. F., Prakash, N., Verma, A., Gargi, R., Sivakumar, S. & Rahmani, A. R. 2003. Catastrophic collapse of Indian White-backed Gyps bengalensis and Long-billed Gyps indicus vulture populations. – Biological Conservation 109: 381–390. DOI: 10.1016/S0006-3207(02)00164-7Otwórz DOISearch in Google Scholar

Rogers, A. R. & Harpending, H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. – Molecular Biology and Evolution 9(3): 552–569. DOI: 10.1093/oxfordjournals.molbev.a0407271316531Otwórz DOISearch in Google Scholar

Sefc, K. M., Payne, R. B. & Sorenson, M. D. 2003. Microsatellite amplification from museum feather samples: effects of fragment size and template concentration on genotyping errors. – The Auk 120(4): 982–989. DOI: 10.1093/auk/120.4.982.Otwórz DOISearch in Google Scholar

Slatkin, M. & Hudson, R. R. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. – Genetics 129(2): 555–562. DOI: 10.1093/genetics/129.2.555.12046431743491Otwórz DOISearch in Google Scholar

Susan, M. H., Whitcomb, M. B., Rachel, S. C., Jesse, D., Collin, A. E., Clinton, W. E., Brian, K. M. P., Miller, M. L., Moses, S. O. M., Douglas, W. R. & Brian, S. 2011. Genetic applications in avian conservation. – The Auk 128(2): 205–229. DOI: 10.1525/auk.2011.128.2.205Otwórz DOISearch in Google Scholar

Swan, G., Naidoo, V., Cuthbert, R., Green, R. E., Pain, D. J., Swarup, D., Prakash, V., Taggart, M., Bekker, L., Das, D., Diekmann, J., Diekmann, M., Killian, E., Mehard, A., Patra, R. C., Saini, M. & Wolter, K. 2006. Removing the threat of diclofenac to critically endangered Asian vultures. – PLoS Biol 4(3): e66. DOI: 10.1371/journal.pbio.0040066135192116435886Otwórz DOISearch in Google Scholar

Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. – Molecular Biology and Evolution 30(12): 2725–2729. DOI: 10.1093/molbev/mst197384031224132122Otwórz DOISearch in Google Scholar

Thakur, M. L. & Narang, S. K. 2012. Population status and habitat-use pattern of Indian White-backed Vulture (Gyps bengalensis) in Himachal Pradesh, India. – Journal of Ecology and the Natural Environment 4(7): 173–180. DOI: 10.5897/JENE11.103.Otwórz DOISearch in Google Scholar

Untergasser, A., Cutcutache, I., Koressaar, T., Ye, J., Faircloth, B. C., Remm, M. & Rozen, S. G. 2012. Primer 3 new capabilities and interfaces. – Nucleic Acids Research 40(15):e 115. DOI: 10.1093/nar/gks596342458422730293Otwórz DOISearch in Google Scholar

Väli, Ü., Dombrovski, V., Treinys, R., Bergmanis, U., Daróczi, S. J., Dravecky, M., Ivanovski, V., Lontkowski, J., Maciorowski, G. & Meyburg, B-U. 2010. Wide-spread hybridization between the Greater Spotted Eagle Aquila clanga and the Lesser Spotted Eagle Aquila pomarina (Aves: Accipitriformes) in Europe. – Biological Journal of the Linnean Society 100: 725–736. DOI: 10.1111/j.1095-8312.2010.01455.xOtwórz DOISearch in Google Scholar

Wink, M. 1995. Phylogeny of Old and New World vultures (Aves: Accipitridae and Cathartidae) inferred from nucleotide sequences of the mitochondrial cytochrome b gene. – Zeitschrift fur Naturforschung C-Journal of Biosciences 50(11): 868–882.10.1515/znc-1995-11-12208561830Search in Google Scholar

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