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Athanasouli, M., and Rödelsperger, C. 2022. Analysis of repeat elements in the Pristionchus pacificus genome reveals an ancient invasion by horizontally transferred transposons. BMC Genomics 23:523.AthanasouliM.RödelspergerC.2022Analysis of repeat elements in the Pristionchus pacificus genome reveals an ancient invasion by horizontally transferred transposonsBMC Genomics23523Search in Google Scholar
Athanasouli, M., Witte, H., Weiler, C., Loschko, T., Eberhardt, G., Sommer, R. J., and Rödelsperger, C. 2020. Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus. BMC Genomics 21:708.AthanasouliM.WitteH.WeilerC.LoschkoT.EberhardtG.SommerR. J.RödelspergerC.2020Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificusBMC Genomics21708Search in Google Scholar
Cheng, H., Concepcion, G. T., Feng, X., Zhang, H., and Li, H. 2021. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm. Nature Methods 18:170–175.ChengH.ConcepcionG. T.FengX.ZhangH.LiH.2021Haplotype-resolved de novo assembly using phased assembly graphs with hifiasmNature Methods18170175Search in Google Scholar
Girgis, H. Z. 2015. Red: An intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale. BMC Bioinformatics 16:227.GirgisH. Z.2015Red: An intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scaleBMC Bioinformatics16227Search in Google Scholar
Gonzalez de la Rosa, P. M., Thomson, M., Trivedi, U., Tracey, A., Tandonnet, S., and Blaxter, M. A. 2021. Telomere-to-telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes. G3 11:jkaa020.Gonzalez de la RosaP. M.ThomsonM.TrivediU.TraceyA.TandonnetS.BlaxterM. A.2021Telomere-to-telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomesG311jkaa020Search in Google Scholar
Herrmann, M., Kanzaki, K., Weiler, C., Theam, P., Rödelsperger, C., and Sommer, R. J. 2024. Description of two new species from South Korea. Journal of Nematology. 2024. 56:20240032.HerrmannM.KanzakiK.WeilerC.TheamP.RödelspergerC.SommerR. J.2024Description of two new species from South KoreJournal of Nematology. 2024.5620240032Search in Google Scholar
Herrmann, M., Ragsdale, E. J., Kanzaki, N, and Sommer, R. J. 2013. Sudhausia aristotokia N. Gen., N. Sp. and S. Crassa N. Gen., N. Sp. (Nematoda: Diplogastridae): Viviparous new species with precocious gonad development. International Journal of Fundamental and Applied Nematological Research 15:1001–20.HerrmannM.RagsdaleE. J.KanzakiNSommerR. J.2013Sudhausia aristotokia N. Gen., N. Sp. and S. Crassa N. Gen., N. Sp. (Nematoda: Diplogastridae): Viviparous new species with precocious gonad developmentInternational Journal of Fundamental and Applied Nematological Research15100120Search in Google Scholar
Kanzaki, N, Herrmann, M., Weiler, C., Röseler, W., Theska, T., Berger, J., Rödelsperger, C., and Sommer, R. J. 2021. Nine new Pristionchus (Nematoda: Diplogastridae) species from China. Zootaxa 4943:zootaxa.4943.1.1.KanzakiNHerrmannM.WeilerC.RöselerW.TheskaT.BergerJ.RödelspergerC.SommerR. J.2021Nine new Pristionchus (Nematoda: Diplogastridae) species from ChinaZootaxa4943zootaxa.4943.1.1.Search in Google Scholar
Kanzaki, N., Ragsdale, E. J., Herrmann, M., Mayer, W. E., Tanaka, R., and Sommer, R. J. 2012. Parapristionchus Giblindavisi N. Gen., N. Sp. (Rhabditida: Diplogastridae) isolated from stag beetles (Coleoptera: Lucanidae) in Japan. International Journal of Fundamental and Applied Nematological Research 14:933–947.KanzakiN.RagsdaleE. J.HerrmannM.MayerW. E.TanakaR.SommerR. J.2012Parapristionchus Giblindavisi N. Gen., N. Sp. (Rhabditida: Diplogastridae) isolated from stag beetles (Coleoptera: Lucanidae) in JapanInternational Journal of Fundamental and Applied Nematological Research14933947Search in Google Scholar
Li, H., and Durbin, R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754–60.LiH.DurbinR.2009Fast and accurate short read alignment with Burrows-Wheeler transformBioinformatics25175460Search in Google Scholar
Molnar, R. I., Bartelmes, G., Dinkelacker, I., Witte, H., and Sommer, R. J. 2011. Mutation rates and intraspecific divergence of the mitochondrial genome of Pristionchus pacificus. Molecular Biology and Evolution 28:2317–26.MolnarR. I.BartelmesG.DinkelackerI.WitteH.SommerR. J.2011Mutation rates and intraspecific divergence of the mitochondrial genome of Pristionchus pacificusMolecular Biology and Evolution28231726Search in Google Scholar
Prabh, N., Röseler, W., Witte, H., Eberhardt, G., Sommer, R. J., and Rödelsperger, C. 2018. Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodes. Genome Research 28:1664–1674.PrabhN.RöselerW.WitteH.EberhardtG.SommerR. J.RödelspergerC.2018Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodesGenome Research2816641674Search in Google Scholar
Ragsdale, E. J., Kanzaki, N., Sommer, R. J. 2014. Levipalatum Texanum N. Gen., N. Sp. (Nematoda: Diplogastridae), an androdioecious species from the South-Eastern USA. International Journal of Fundamental and Applied Nematological Research 16:695–709.RagsdaleE. J.KanzakiN.SommerR. J.2014Levipalatum Texanum N. Gen., N. Sp. (Nematoda: Diplogastridae), an androdioecious species from the South-Eastern USAInternational Journal of Fundamental and Applied Nematological Research16695709Search in Google Scholar
Rödelsperger, C. 2021. The community-curated Pristionchus pacificus genome facilitates automated gene annotation improvement in related nematodes. BMC Genomics 22:216.RödelspergerC.2021The community-curated Pristionchus pacificus genome facilitates automated gene annotation improvement in related nematodesBMC Genomics22216Search in Google Scholar
Rödelsperger, C. 2024. Comparative genomics of sex, chromosomes, and sex chromosomes in caenorhabditis elegans and other nematodes. Methods in molecular biology 2802:455–472.RödelspergerC.2024Comparative genomics of sex, chromosomes, and sex chromosomes in caenorhabditis elegans and other nematodesMethods in molecular biology2802455472Search in Google Scholar
Rödelsperger, C., Röseler, W., Athanasouli, M., Wighard, S., Herrmann, M., Sommer, R. J. 2024. Genome assembly of the nematode Rhabditoides Inermis from a complex microbial community. Genome Biology and Evolution 16:evae230.RödelspergerC.RöselerW.AthanasouliM.WighardS.HerrmannM.SommerR. J.2024Genome assembly of the nematode Rhabditoides Inermis from a complex microbial communityGenome Biology and Evolution16evae230Search in Google Scholar
Röseler, W., Collenberg, M., Yoshida, K., Lanz, C., Sommer, R. J., and Rödelsperger, C. 2022. The improved genome of the nematode Parapristionchus Giblindavisi provides insights into lineage-specific gene family evolution. G3 12:jkac215.RöselerW.CollenbergM.YoshidaK.LanzC.SommerR. J.RödelspergerC.2022The improved genome of the nematode Parapristionchus Giblindavisi provides insights into lineage-specific gene family evolutionG312jkac215Search in Google Scholar
Simão, F. A., Waterhouse, R. M., Ioannidis, P., Kriventseva, E. V., and Zdobnov, E. M. 2015. BUSCO: Assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31:3210–3112.SimãoF. A.WaterhouseR. M.IoannidisP.KriventsevaE. V.ZdobnovE. M.2015BUSCO: Assessing genome assembly and annotation completeness with single-copy orthologsBioinformatics3132103112Search in Google Scholar
Sommer, R. J., Carta, L. K., Kim, S.-Y., and Sternberg, P. W. 1996. Morphological, genetic and molecular description of Pristionchus pacificus Sp. n. (Nematoda: Neodiplogasteridae). Fundamental and Applied Nematology 19:511–522.SommerR. J.CartaL. K.KimS.-Y.SternbergP. W.1996Morphological, genetic and molecular description of Pristionchus pacificus Sp. n. (Nematoda: Neodiplogasteridae)Fundamental and Applied Nematology19511522Search in Google Scholar
Tandonnet, S., Koutsovoulos, G. D., Adams, S., Cloarec, D., Parihar, M., Blaxter, M. L., and Pires-daSilva, A. 2019. Chromosome-wide evolution and sex determination in the three-sexed nematode Auanema Rhodensis. G3 9:1211–1230.TandonnetS.KoutsovoulosG. D.AdamsS.CloarecD.PariharM.BlaxterM. L.Pires-daSilvaA.2019Chromosome-wide evolution and sex determination in the three-sexed nematode Auanema RhodensisG3912111230Search in Google Scholar
Yoshida, K., Witte, H., Hatashima, R., Sun, S., Kikuchi, T., Röseler, W., and Sommer, R. J. 2024. Rapid chromosome evolution and acquisition of thermosensitive stochastic sex determination in nematode androdioecious hermaphrodites. Nature Communications 15:9649.YoshidaK.WitteH.HatashimaR.SunS.KikuchiT.RöselerW.SommerR. J.2024Rapid chromosome evolution and acquisition of thermosensitive stochastic sex determination in nematode androdioecious hermaphroditesNature Communications159649Search in Google Scholar
Zhou, C., McCarthy, S. A., and Durbin, R. 2023. YaHS: Yet another Hi-C scaffolding tool. Bioinformatics 39:btac808.ZhouC.McCarthyS. A.DurbinR.2023YaHS: Yet another Hi-C scaffolding toolBioinformatics39btac808Search in Google Scholar