This work is licensed under the Creative Commons Attribution 4.0 International License.
Anderson, K. E., Sheehan, T. H., Mott, B. M., Maes, P., Snyder, L., Schwan, M. R., ... Corby-Harris, V. (2013). Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera). PLoS One, 8, e83125. DOI: 10.1371/journal.pone.0083125AndersonK. E.SheehanT. H.MottB. M.MaesP.SnyderL.SchwanM. R.Corby-HarrisV.2013Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera)8e8312510.1371/journal.pone.0083125Open DOISearch in Google Scholar
Bleau, N., Bouslama, S., Giovenazzo, P., Derome, N. (2020). Dynamics of the Honeybee (Apis mellifera) Gut Microbiota Throughout the Overwintering Period in Canada. Microorganisms, 8, 1146. DOI: 10.3390/microorganisms8081146BleauN.BouslamaS.GiovenazzoP.DeromeN.2020Dynamics of the Honeybee (Apis mellifera) Gut Microbiota Throughout the Overwintering Period in Canada8114610.3390/microorganisms8081146Open DOISearch in Google Scholar
Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., ... Caporaso, J. G. (2019). Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology, 37, 852–857. DOI: 10.1038/s41587-019-0209-9BolyenE.RideoutJ. R.DillonM. R.BokulichN. A.AbnetC. C.Al-GhalithG. A.CaporasoJ. G.2019Reproducible, interactive, scalable and extensible microbiome data science using QIIME 23785285710.1038/s41587-019-0209-9Open DOISearch in Google Scholar
Bonilla-Rosso, G., & Engel, P. (2018). Functional roles and metabolic niches in the honey bee gut microbiota. Current Opinion in Microbiology, 43, 69–76. DOI: 10.1016/j.mib.2017.12.009Bonilla-RossoG.EngelP.2018Functional roles and metabolic niches in the honey bee gut microbiota43697610.1016/j.mib.2017.12.009Open DOISearch in Google Scholar
Bottacini, F., Milani, C., Turroni, F., Sánchez, B., Foroni, E., Duranti, S., ... Ventura, M. (2012). Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut. PLoS One, 7, e44229. DOI: 10.1371/journal.pone.0044229BottaciniF.MilaniC.TurroniF.SánchezB.ForoniE.DurantiS.VenturaM.2012Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut7e4422910.1371/journal.pone.0044229Open DOISearch in Google Scholar
Callahan, B. J., McMurdie, P. J, Rosen M. J., Han, A. W., Johnson, A. J., Holmes, S.P. (2016). DADA2: High-resolution sample inference from Illumina amplicon data. Nature Methods, 13, 581–583. DOI: 10.1038/nmeth.3869CallahanB. J.McMurdieP. JRosenM. J.HanA. W.JohnsonA. J.HolmesS.P.2016DADA2: High-resolution sample inference from Illumina amplicon data1358158310.1038/nmeth.3869Open DOISearch in Google Scholar
Caspi, R., Billington, R., Ferrer, L., Foerster, H., Fulcher, C. A., Keseler, I. M., ... Karp, P. D. (2016). The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Research, 44, D471–D480. DOI: 10.1093/nar/gkv1164CaspiR.BillingtonR.FerrerL.FoersterH.FulcherC. A.KeselerI. M.KarpP. D.2016The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases44D471D48010.1093/nar/gkv1164Open DOISearch in Google Scholar
Chen, C., Wang, H., Liu, Z., Chen, X., Tang, J., Meng, F., Shi, W. (2018). Population Genomics Provide Insights into the Evolution and Adaptation of the Eastern Honey Bee (Apis cerana). Molecular Biology and Evolution, 35(9), 2260–2271. DOI: 10.1093/molbev/msy130ChenC.WangH.LiuZ.ChenX.TangJ.MengF.ShiW.2018Population Genomics Provide Insights into the Evolution and Adaptation of the Eastern Honey Bee (Apis cerana)3592260227110.1093/molbev/msy130Open DOISearch in Google Scholar
Cotter, P. D., & Hill, C. (2003). Surviving the acid test: responses of gram-positive bacteria to low pH. Microbiology and Molecular Biology Reviews, 67(3), 429–453. DOI: 10.1128/MMBR.67.3.429-453.2003CotterP. D.HillC.2003Surviving the acid test: responses of gram-positive bacteria to low pH67342945310.1128/MMBR.67.3.429-453.2003Open DOISearch in Google Scholar
D'Alvise, P., Böhme, F., Codrea, M. C., Alexander, S., Nahnsen, S., Binzer, M., ... Hasselmann, M. (2018). The impact of winter feed type on intestinal microbiota and parasites in honey bees. Apidologie, 49, 252–264. DOI: 10.1007/s13592-017-0551-1D'AlviseP.BöhmeF.CodreaM. C.AlexanderS.NahnsenS.BinzerM.HasselmannM.2018The impact of winter feed type on intestinal microbiota and parasites in honey bees4925226410.1007/s13592-017-0551-1Open DOISearch in Google Scholar
Diao, Q., Sun, L., Zheng, H., Zeng, Z., Wang, S., Xu, S., ... Wu, J. (2018). Genomic and transcriptomic analysis of the Asian honeybee Apis cerana provides novel insights into honeybee biology. Scientific Reports, 8, 822. DOI: 10.1038/s41598-017-17338-6DiaoQ.SunL.ZhengH.ZengZ.WangS.XuS.WuJ.2018Genomic and transcriptomic analysis of the Asian honeybee Apis cerana provides novel insights into honeybee biology882210.1038/s41598-017-17338-6Open DOISearch in Google Scholar
Ellegaard, K. M., & Engel, P. (2019). Genomic diversity landscape of the honey bee gut microbiota. Nature Communications, 10, 446. DOI: 10.1038/s41467-019-08303-0EllegaardK. M.EngelP.2019Genomic diversity landscape of the honey bee gut microbiota1044610.1038/s41467-019-08303-0Open DOISearch in Google Scholar
Ellegaard, K. M., Tamarit, D., Javelind, E., Olofsson, T. C., Andersson, S. G., Vásquez, A. (2015). Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut. BMC Genomics, 16, 284. DOI: 10.1186/s12864-015-1476-6EllegaardK. M.TamaritD.JavelindE.OlofssonT. C.AnderssonS. G.VásquezA.2015Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut1628410.1186/s12864-015-1476-6Open DOISearch in Google Scholar
Emery, O., Schmidt, K., Engel, P. (2017). Immune system stimulation by the gut symbiont Frischella perrara in the honey bee (Apis mellifera). Molecular Ecology, 26(9), 2576–2590. DOI: 10.1111/mec.14058EmeryO.SchmidtK.EngelP.2017Immune system stimulation by the gut symbiont Frischella perrara in the honey bee (Apis mellifera)2692576259010.1111/mec.14058Open DOISearch in Google Scholar
Engel, P., Martinson, V. G., Moran, N. A. (2012). Functional diversity within the simple gut microbiota of the honey bee. Proceedings of the National Academy of Sciences of the United States of America, 109(27), 11002–11007. DOI: 10.1073/pnas.1202970109EngelP.MartinsonV. G.MoranN. A.2012Functional diversity within the simple gut microbiota of the honey bee10927110021100710.1073/pnas.1202970109Open DOISearch in Google Scholar
Engel, P., & Moran, N. A. (2013). The gut microbiota of insects-diversity in structure and function. FEMS Microbiol Reviews, 37(5), 699–735. DOI: 10.1111/1574-6976.12025EngelP.MoranN. A.2013The gut microbiota of insects-diversity in structure and function37569973510.1111/1574-6976.12025Open DOISearch in Google Scholar
Guo, J., Wu, J., Chen, Y., Evans, J. D., Dai, R., Luo, W., Li, J. (2015). Characterization of gut bacteria at different developmental stages of Asian honey bees, Apis cerana. Journal of Invertebrate Pathology, 127, 110–114. DOI: 10.1016/j.jip.2015.03.010GuoJ.WuJ.ChenY.EvansJ. D.DaiR.LuoW.LiJ.2015Characterization of gut bacteria at different developmental stages of Asian honey bees, Apis cerana12711011410.1016/j.jip.2015.03.010Open DOISearch in Google Scholar
Hamdi, C., Balloi, A., Essanaa, J., Crotti, E., Gonella, E., Raddadi, N., ... Cherif, A. (2011). Gut microbiome dysbiosis and honeybee health. Journal of Applied Entomology, 135, 524–533. DOI: 10.1111/j.1439-0418.2010.01609HamdiC.BalloiA.EssanaaJ.CrottiE.GonellaE.RaddadiN.CherifA.2011Gut microbiome dysbiosis and honeybee health13552453310.1111/j.1439-0418.2010.01609Open DOISearch in Google Scholar
Hroncova, Z., Havlik, J., Killer, J., Doskocil, I., Tyl, J., Kamler, M., ... Rada, V. (2015). Variation in honey bee gut microbial diversity affected by ontogenetic stage, age and geographic location. PLoS One, 10(3), e0118707. DOI: 10.1371/journal.pone.0118707HroncovaZ.HavlikJ.KillerJ.DoskocilI.TylJ.KamlerM.RadaV.2015Variation in honey bee gut microbial diversity affected by ontogenetic stage, age and geographic location103e011870710.1371/journal.pone.0118707Open DOISearch in Google Scholar
Hung, K. J., Kingston, J. M., Albrecht, M., Holway, D. A., Kohn, J. R. (2018). The worldwide importance of honey bees as pollinators in natural habitats. Proceedings of the Royal Society B: Biological Sciences, 285(1870), 20172140. DOI: 10.1098/rspb.2017.2140HungK. J.KingstonJ. M.AlbrechtM.HolwayD. A.KohnJ. R.2018The worldwide importance of honey bees as pollinators in natural habitats28518702017214010.1098/rspb.2017.2140Open DOISearch in Google Scholar
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., Tanabe, M. (2012). KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Research, 40, D109–D114. DOI: 10.1093/nar/gkr988KanehisaM.GotoS.SatoY.FurumichiM.TanabeM.2012KEGG for integration and interpretation of large-scale molecular data sets40D109D11410.1093/nar/gkr988Open DOISearch in Google Scholar
Kwong, W. K., Mancenido, A. L., Moran, N. A. (2014). Genome Sequences of Lactobacillus sp. Strains wkB8 and wkB10, Members of the Firm-5 Clade, from Honey Bee Guts. Microbiology Genome Announcements, 2(6), e01176-14. DOI: 10.1128/genomeA.01176-14KwongW. K.MancenidoA. L.MoranN. A.2014Genome Sequences of Lactobacillus sp. Strains wkB8 and wkB10, Members of the Firm-5 Clade, from Honey Bee Guts26e01176-1410.1128/genomeA.01176-14Open DOISearch in Google Scholar
Kwong, W. K., & Moran, N. A. (2016). Gut microbial communities of social bees. Nature Reviews Microbiology, 14, 374–384. DOI: 10.1038/nrmicro.2016.43KwongW. K.MoranN. A.2016Gut microbial communities of social bees1437438410.1038/nrmicro.2016.43Open DOISearch in Google Scholar
Langille, M. G., Zaneveld, J., Caporaso, J. G., McDonald, D., Knights, D., Reyes, J. A., ... Huttenhower C. (2013). Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature Biotechnology, 31, 814–821. DOI: 10.1038/nbt.2676LangilleM. G.ZaneveldJ.CaporasoJ. G.McDonaldD.KnightsD.ReyesJ. A.HuttenhowerC.2013Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences3181482110.1038/nbt.2676Open DOISearch in Google Scholar
Lee, F. J., Rusch, D. B., Stewart, F. J., Mattila, H. R., Newton, I. L. (2015). Saccharide breakdown and fermentation by the honey bee gut microbiome. Environmental Microbiology, 17(3), 796–815. DOI: 10.1111/1462-2920.12526LeeF. J.RuschD. B.StewartF. J.MattilaH. R.NewtonI. L.2015Saccharide breakdown and fermentation by the honey bee gut microbiome17379681510.1111/1462-2920.12526Open DOISearch in Google Scholar
Li, C., Tang, M., Li, X., Zhou, X. (2022). Community Dynamics in Structure and Function of Honey Bee Gut Bacteria in Response to Winter Dietary Shift. mBio, 13(5), e0113122. DOI: 10.1128/mbio.01131-22LiC.TangM.LiX.ZhouX.2022Community Dynamics in Structure and Function of Honey Bee Gut Bacteria in Response to Winter Dietary Shift135e011312210.1128/mbio.01131-22Open DOISearch in Google Scholar
Liberti, J., & Engel, P. (2020). The gut microbiota-brain axis of insects. Current Opinion in Insect Science, 39, 6–13. DOI: 10.1016/j.cois.2020.01.004LibertiJ.EngelP.2020The gut microbiota-brain axis of insects3961310.1016/j.cois.2020.01.004Open DOISearch in Google Scholar
Liu, C., Xu, B., Liu, Z., Wang, Y., Wang, H. (2017). Effects of different overwintering feeds on midgut digestive enzyme activities, tissue development status and antioxidant enzyme gene expression of honeybees. Chinese Journal of Animal Nutrition, 29, 1183–1190. DOI: 10.3969/j.issn.1006-267x.2017.04.013LiuC.XuB.LiuZ.WangY.WangH.2017Effects of different overwintering feeds on midgut digestive enzyme activities, tissue development status and antioxidant enzyme gene expression of honeybees291183119010.3969/j.issn.1006-267x.2017.04.013Open DOISearch in Google Scholar
Liu, N., Liu, H., Ju, Y., Li, X., Li, Y., Wang, T., ... Xing, X. (2022a). Geometric morphology and population genomics provide insights into the adaptive evolution of Apis cerana in Changbai Mountain. BMC Genomics, 23(64), 1–16. DOI: 10.1186/s12864-022-08298-xLiuN.LiuH.JuY.LiX.LiY.WangT.XingX.2022aGeometric morphology and population genomics provide insights into the adaptive evolution of Apis cerana in Changbai Mountain236411610.1186/s12864-022-08298-xOpen DOISearch in Google Scholar
Liu, N., Ren, Z., Ren, Q., Chang, Z., Li, J., Li, X., ... Xing, X. (2022b). Full length transcriptomes analysis of cold-resistance of Apis cerana in Changbai Mountain during overwintering period. Gene, 830, 146503. DOI: 10.1016/j.gene.2022.146503LiuN.RenZ.RenQ.ChangZ.LiJ.LiX.XingX.2022bFull length transcriptomes analysis of cold-resistance of Apis cerana in Changbai Mountain during overwintering period83014650310.1016/j.gene.2022.146503Open DOISearch in Google Scholar
Ludvigsen, J., Rangberg, A., Avershina, E., Sekelja, M., Kreibich, C., Amdam, G., Rudi, K. (2015). Shifts in the Midgut/Pyloric Microbiota Composition within a Honey Bee Apiary throughout a Season. Microbes and Environments, 30(3), 235–244. DOI: 10.1264/jsme2.ME15019LudvigsenJ.RangbergA.AvershinaE.SekeljaM.KreibichC.AmdamG.RudiK.2015Shifts in the Midgut/Pyloric Microbiota Composition within a Honey Bee Apiary throughout a Season30323524410.1264/jsme2.ME15019Open DOISearch in Google Scholar
Martinson, V. G., Danforth, B. N., Minckley, R.L., Rueppell, O., Tingek, S., Moran, N. A. (2011). A simple and distinctive microbiota associated with honey bees and bumble bees. Molecular Ecology, 20(3), 619–628. DOI: 10.1111/j.1365-294X.2010.04959.xMartinsonV. G.DanforthB. N.MinckleyR.L.RueppellO.TingekS.MoranN. A.2011A simple and distinctive microbiota associated with honey bees and bumble bees20361962810.1111/j.1365-294X.2010.04959.xOpen DOISearch in Google Scholar
Martinson, V. G., Moy, J., Moran, N. A. (2012). Establishment of characteristic gut bacteria during development of the honeybee worker. Applied and Environmental Microbiology, 78(8), 2830–2840. DOI: 10.1128/AEM.07810-11MartinsonV. G.MoyJ.MoranN. A.2012Establishment of characteristic gut bacteria during development of the honeybee worker7882830284010.1128/AEM.07810-11Open DOISearch in Google Scholar
Raymann, K., & Moran, N. A. (2018). The role of the gut microbiome in health and disease of adult honey bee workers. Current Opinion in Insect Science, 26, 97–104. DOI: 10.1016/j.cois.2018.02.012RaymannK.MoranN. A.2018The role of the gut microbiome in health and disease of adult honey bee workers269710410.1016/j.cois.2018.02.012Open DOISearch in Google Scholar
Sabaté, D. C., Carrillo, L., Audisio, M. C. (2009). Inhibition of Paenibacillus larvae and Ascosphaera apis by Bacillus subtilis isolated from honeybee gut and honey samples. Research in Microbiology, 160(3), 193–199. DOI: 10.1016/j.resmic.2009.03.002SabatéD. C.CarrilloL.AudisioM. C.2009Inhibition of Paenibacillus larvae and Ascosphaera apis by Bacillus subtilis isolated from honeybee gut and honey samples160319319910.1016/j.resmic.2009.03.002Open DOISearch in Google Scholar
Taylor, M. A., Robertson, A. W., Biggs, P. J., Richards, K. K., Jones, D. F., Parkar, S. G. (2019). The effect of carbohydrate sources: Sucrose, invert sugar and components of mānuka honey, on core bacteria in the digestive tract of adult honey bees (Apis mellifera). PLoS One, 14(12), e0225845. DOI: 10.1371/journal.pone.0225845TaylorM. A.RobertsonA. W.BiggsP. J.RichardsK. K.JonesD. F.ParkarS. G.2019The effect of carbohydrate sources: Sucrose, invert sugar and components of mānuka honey, on core bacteria in the digestive tract of adult honey bees (Apis mellifera)1412e022584510.1371/journal.pone.0225845Open DOISearch in Google Scholar
Wright, G. A., Nicolson, S. W., Shafir, S. (2018). Nutritional Physiology and Ecology of Honey Bees. Annual Review of Entomology, 63, 327–344. DOI: 10.1146/annurev-ento-020117-043423WrightG. A.NicolsonS. W.ShafirS.2018Nutritional Physiology and Ecology of Honey Bees6332734410.1146/annurev-ento-020117-043423Open DOISearch in Google Scholar
Wu, Y., Zheng, Y., Zheng, H., Hu, F. (2020). Research progress in the composition and function of gut microbiota of honey bee. Journal of Environmental Entomology, 42, 364–369. DOI: 10.3969/j.issn.1674-0858.2020.02.16WuY.ZhengY.ZhengH.HuF.2020Research progress in the composition and function of gut microbiota of honey bee4236436910.3969/j.issn.1674-0858.2020.02.16Open DOISearch in Google Scholar
Zhang, X., Li, X., Su, Q., Cao, Q., Li, C., Niu, Q., Zheng, H. (2019). A curated 16S rRNA reference database for the classification of honeybee and bumblebee gut microbiota. Biodiversity Science, 27(5), 557–566. DOI: 10.17520/biods.2019021ZhangX.LiX.SuQ.CaoQ.LiC.NiuQ.ZhengH.2019A curated 16S rRNA reference database for the classification of honeybee and bumblebee gut microbiota27555756610.17520/biods.2019021Open DOISearch in Google Scholar
Zhang, Y., Chen, Y., Wu, Y., Si, J., Zhang, C., Zheng, H., Hu, F. (2019). Discrimination of the entomological origin of honey according to the secretions of the bee (Apis cerana or Apis mellifera). Food Research International, 116, 362–369. DOI: 10.1016/j.foodres.2018.08.049ZhangY.ChenY.WuY.SiJ.ZhangC.ZhengH.HuF.2019Discrimination of the entomological origin of honey according to the secretions of the bee (Apis cerana or Apis mellifera)11636236910.1016/j.foodres.2018.08.049Open DOISearch in Google Scholar
Zheng, H., Powell, J. E., Steele, M. I., Dietrich, C., Moran, N. A. (2017). Honeybee gut microbiota promotes host weight gain via bacterial metabolism and hormonal signaling. Proceedings of the National Academy of Sciences of the United States of America, 114(18), 4775–4780. DOI: 10.1073/pnas.1701819114ZhengH.PowellJ. E.SteeleM. I.DietrichC.MoranN. A.2017Honeybee gut microbiota promotes host weight gain via bacterial metabolism and hormonal signaling114184775478010.1073/pnas.1701819114Open DOISearch in Google Scholar