Otwarty dostęp

Performance and accuracy of the automated measurement software: Simple Online Automated Plant Phenomics (SOAPP)

, ,  oraz   
08 sie 2025

Zacytuj
Pobierz okładkę

Alam MM, Vilankar KP, Field DJ, Chandler DM (2014) Local masking in natural images: A database and analysis. Journal of Vision 14:1–38. AlamMM VilankarKP FieldDJ ChandlerDM 2014 Local masking in natural images: A database and analysis Journal of Vision 14 1 38 Search in Google Scholar

Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng H, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Ali Amer M, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JDG, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M (2010) Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465:627–31. AtwellS HuangYS VilhjálmssonBJ WillemsG HortonM LiY MengH PlattA TaroneAM HuTT JiangR MuliyatiNW ZhangX Ali AmerM BaxterI BrachiB ChoryJ DeanC DebieuM de MeauxJ EckerJR FaureN KniskernJM JonesJDG MichaelT NemriA RouxF SaltDE TangC TodescoM TrawMB WeigelD MarjoramP BorevitzJO BergelsonJ NordborgM 2010 Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines Nature 465 627 31 Search in Google Scholar

Bauer LV, Barker RJ, Gilroy S (2022) SOApp (Simple Online Automated Plant Phenomics): Application for measuring plant vegetative phenotypes. ASGSR Abstract Book. BauerLV BarkerRJ GilroyS 2022 SOApp (Simple Online Automated Plant Phenomics): Application for measuring plant vegetative phenotypes ASGSR Abstract Book Search in Google Scholar

Bauer LV, Barker RJ, Jenkins BE, Cauthorn G, Gilroy S (2024) SOApp (Simple Online Automated Plant Phenomics): Integrating plant phenomics and augmented reality to understand plant growth in space and on the ground. ASGSR Abstract Book. BauerLV BarkerRJ JenkinsBE CauthornG GilroyS 2024 SOApp (Simple Online Automated Plant Phenomics): Integrating plant phenomics and augmented reality to understand plant growth in space and on the ground ASGSR Abstract Book Search in Google Scholar

Betegón-Putze I, González A, Sevillano X, Blasco-Escámez D, Caño-Delgado AI. (2019) MyROOT: A method and software for the semiautomatic measurement of primary root length in Arabidopsis seedlings. Plant Journal 98:1145–56. Betegón-PutzeI GonzálezA SevillanoX Blasco-EscámezD Caño-DelgadoAI 2019 MyROOT: A method and software for the semiautomatic measurement of primary root length in Arabidopsis seedlings Plant Journal 98 1145 56 Search in Google Scholar

Clark RT, Famoso AN, Zhao K, Shaff JE, Craft EJ, Bustamante CD, McCouch S, Aneshansley DJ, Kochian LV (2013) High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development. Plant, Cell and Environment 36:454–66. ClarkRT FamosoAN ZhaoK ShaffJE CraftEJ BustamanteCD McCouchS AneshansleyDJ KochianLV 2013 High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development Plant, Cell and Environment 36 454 66 Search in Google Scholar

French A, Ubeda-Tomás S, Holman TJ, Bennett MJ, Pridmore T (2009) High-throughput quantification of root growth using a novel image-analysis tool. Plant Physiology 150:1784–95. FrenchA Ubeda-TomásS HolmanTJ BennettMJ PridmoreT 2009 High-throughput quantification of root growth using a novel image-analysis tool Plant Physiology 150 1784 95 Search in Google Scholar

Galkovskyi T, Mileyko Y, Bucksch A, Moore B, Symonova O, Price CA, Topp CN, Iyer-Pascuzzi AS, Zurek PR, Fang S, Harer J, Benfey PN, Weitz JS (2012) GiA Roots: Software for the high throughput analysis of plant root system architecture. BMC Plant Biology 12. GalkovskyiT MileykoY BuckschA MooreB SymonovaO PriceCA ToppCN Iyer-PascuzziAS ZurekPR FangS HarerJ BenfeyPN WeitzJS 2012 GiA Roots: Software for the high throughput analysis of plant root system architecture BMC Plant Biology 12 Search in Google Scholar

Grubbs F (1969) Procedures for detecting outlying observations in samples. Technometrics 11:1–21. GrubbsF 1969 Procedures for detecting outlying observations in samples Technometrics 11 1 21 Search in Google Scholar

Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjámsson BJ, Nordborg M, Borevitz JO, Bergelson J (2012) Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics 44:212–6. HortonMW HancockAM HuangYS ToomajianC AtwellS AutonA MuliyatiNW PlattA SperoneFG VilhjámssonBJ NordborgM BorevitzJO BergelsonJ 2012 Arabidopsis thaliana accessions from the RegMap panel Nature Genetics 44 212 6 Search in Google Scholar

Humplík JF, Lazár D, Husičková A, Spíchal L (2015) Automated phenotyping of plant shoots using imaging methods for analysis of plant stress responses - A review. Plant Methods 11:1–10. HumplíkJF LazárD HusičkováA SpíchalL 2015 Automated phenotyping of plant shoots using imaging methods for analysis of plant stress responses - A review Plant Methods 11 1 10 Search in Google Scholar

Ingram KI, Leers GA (2001) Software for measuring root characters from digital images. Agronomy Journal 93:918–22. IngramKI LeersGA 2001 Software for measuring root characters from digital images Agronomy Journal 93 918 22 Search in Google Scholar

Jacob V, Bhasi M, Gopikakumari R (2011) Impact of human factors on measurement errors. International Journal of Measurement Technologies and Instrumentation Engineering 1:28–44. JacobV BhasiM GopikakumariR 2011 Impact of human factors on measurement errors International Journal of Measurement Technologies and Instrumentation Engineering 1 28 44 Search in Google Scholar

Kiss JZ, Brinckmann E, Brillouet C (2000) Development and growth of several strains of Arabidopsis seedlings in microgravity. International Journal of Plant Sciences 161:55–62. KissJZ BrinckmannE BrillouetC 2000 Development and growth of several strains of Arabidopsis seedlings in microgravity International Journal of Plant Sciences 161 55 62 Search in Google Scholar

Kiss JZ, Millar KDL, Edelmann RE (2012) Phototropism of Arabidopsis thaliana in microgravity and fractional gravity on the International Space Station. Planta 236:635–45. KissJZ MillarKDL EdelmannRE 2012 Phototropism of Arabidopsis thaliana in microgravity and fractional gravity on the International Space Station Planta 236 635 45 Search in Google Scholar

Kiss JZ, Wolverton C, Wyatt SE, Hasenstein KH, van Loon JJWA (2019) Comparison of microgravity analogs to spaceflight in studies of plant growth and development. Frontiers in Plant Science 10:1–10. KissJZ WolvertonC WyattSE HasensteinKH van LoonJJWA 2019 Comparison of microgravity analogs to spaceflight in studies of plant growth and development Frontiers in Plant Science 10 1 10 Search in Google Scholar

Medina FJ, Manzano A, Herranz R, Kiss JZ (2022) Red light enhances plant adaptation to spaceflight and Mars g-levels. Life 12:1–17. MedinaFJ ManzanoA HerranzR KissJZ 2022 Red light enhances plant adaptation to spaceflight and Mars g-levels Life 12 1 17 Search in Google Scholar

Millar KDL, Kumar P, Correll MJ, Mullen JL, Hangarter RP, Edelmann RE, Kiss JZ (2010) A novel phototropic response to red light is revealed in microgravity. New Phytologist 186:648–56. MillarKDL KumarP CorrellMJ MullenJL HangarterRP EdelmannRE KissJZ 2010 A novel phototropic response to red light is revealed in microgravity New Phytologist 186 648 56 Search in Google Scholar

Pierret A, Gonkhamdee S, Jourdan C, Maeght JL (2013) IJ_Rhizo: An open-source software to measure scanned images of root samples. Plant and Soil 373:531–9. PierretA GonkhamdeeS JourdanC MaeghtJL 2013 IJ_Rhizo: An open-source software to measure scanned images of root samples Plant and Soil 373 531 9 Search in Google Scholar

Seethepalli A, Dhakal K, Griffiths M, Guo H, Freschet GT, York LM (2021) RhizoVision Explorer: Open-source software for root image analysis and measurement standardization. AoB PLANTS 13:1–15. SeethepalliA DhakalK GriffithsM GuoH FreschetGT YorkLM 2021 RhizoVision Explorer: Open-source software for root image analysis and measurement standardization AoB PLANTS 13 1 15 Search in Google Scholar

Shymanovich T, Vandenbrink JP, Herranz R, Medina FJ, Kiss JZ (2022) Spaceflight studies identify a gene encoding an intermediate filament involved in tropism pathways. Plant Physiology and Biochemistry 171:191–200. ShymanovichT VandenbrinkJP HerranzR MedinaFJ KissJZ 2022 Spaceflight studies identify a gene encoding an intermediate filament involved in tropism pathways Plant Physiology and Biochemistry 171 191 200 Search in Google Scholar

Stephens MA (1979). Tests of fit for the logistic distribution based on the empirical distribution function. Biometrika 66:591–595. StephensMA 1979 Tests of fit for the logistic distribution based on the empirical distribution function Biometrika 66 591 595 Search in Google Scholar

Sugali K, Sprunger C, N Inukollu V (2021) AI testing: Ensuring a good data split between data sets (training and test) using K-means clustering and decision tree analysis. International Journal on Soft Computing 12:1–11. SugaliK SprungerC N InukolluV 2021 AI testing: Ensuring a good data split between data sets (training and test) using K-means clustering and decision tree analysis International Journal on Soft Computing 12 1 11 Search in Google Scholar

Symonova O, Topp CN, Edelsbrunner H (2015) DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots. PLoS ONE 10:1–15. SymonovaO ToppCN EdelsbrunnerH 2015 DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots PLoS ONE 10 1 15 Search in Google Scholar

Vandenbrink JP, Herranz R, Medina FJ, Edelmann RE, Kiss JZ (2016) A novel blue-light phototropic response is revealed in roots of Arabidopsis thaliana in microgravity. Planta 244:1201–15. VandenbrinkJP HerranzR MedinaFJ EdelmannRE KissJZ 2016 A novel blue-light phototropic response is revealed in roots of Arabidopsis thaliana in microgravity Planta 244 1201 15 Search in Google Scholar

Wang L, Uilecan IV, Assadi AH, Kozmik CA, Spalding EP (2009) HYPOTrace: Image analysis software for measuring hypocotyl growth and shape demonstrated on arabidopsis seedlings undergoing photomorphogenesis. Plant Physiology 149:1632–7. WangL UilecanIV AssadiAH KozmikCA SpaldingEP 2009 HYPOTrace: Image analysis software for measuring hypocotyl growth and shape demonstrated on arabidopsis seedlings undergoing photomorphogenesis Plant Physiology 149 1632 7 Search in Google Scholar

Język:
Angielski
Częstotliwość wydawania:
2 razy w roku
Dziedziny czasopisma:
Nauki biologiczne, Nauki biologiczne, inne, Nauka o materiałach, Nauka o materiałach, inne, Fizyka, Fizyka, inne