| FastQC |
QC tool for high throughput sequence data |
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ |
| Cytoscape |
Network Visualization Tool |
https://cytoscape.org/ |
| VisANT |
Biological Network Analysis Tool |
http://www.visantnet.org |
| Pathway Studio |
Navigation and Analysis of Biological Pathways, Gene Regulation Networks and Protein Interaction Maps |
https://ariadnegenomics.com/products/pathway-studio |
| Patika |
Integrated Visual Environment for Collaborative Construction and Analysis of Cellular Pathways |
https://www.patika.org/ |
| BLAST+ |
Sequence Homology Search Tool |
https://blast.ncbi.nlm.nih.gov/blast/Blast.cgi |
| ClustalW |
Multiple Sequence Alignment Tool |
http://www.clustal.org/clustal2/ |
| MAFFT |
Multiple Sequence Alignment Tool |
https://mafft.cbrc.jp/alignment/server/index.html |
| MUSCLE |
Multiple Sequence Alignment Tool |
https://www. drive5.com/muscle/ |
| PHYLIP |
Phylogenetics Tree Building Tool |
https://phylipweb.github.io/phylip/ |
| MEGA |
Molecular Evolutionary Genetics Analysis Tool |
https://www. megasoftware.net/ |
| Unipro UGENE |
Integrated Bioinformatics Tool |
https://ugene.net/ |
| EDGAR |
Software Platform for Comparative Genomics |
https://edgar3.computational.bio.uni-giessen.de/cgi-bin/ edgar_login.cgi?cookie_test= 1 |
| PHI-base |
Pathogen Host Interactions Database |
http://www.phi-base.org/ |
| CAZy |
Carbohydrate-Active enZYmes Database |
http://www.cazy.org/Home.html |
| DFVF |
Database of Virulence Factors in Fungal Pathogens |
http://sysbio.unl.edu/DFVF/ |
| FungiDB |
Database |
https://fungidb.org/fungidb/app |
| GenBank |
Genetic Sequence Database |
https://www.ncbi.nlm.nih.gov/genbank/ |
| DDBJ |
Genetic Sequence Database |
https://www.ddbj.nig.ac.jp/index-e.html |
| EMBL |
Genetic Sequence Database |
https://www.ebi.ac.uk/ |
| Fungal Genome Initiatives |
Fungal Genome Database |
https://www.broadinstitute.org/scientific-community/science/ projects/fungal-genome-initiative/status-fungal-genome-projects |
| EnsemblFungi |
Genome Portal for Selected Fungal Species |
https://fungi.ensembl.org/index.html |
| ARFbase |
Database on protein mutations responsible for antifungal resistance |
http://proteininformatics.org/mkumar/afrbase/ |
| FunResDB |
Web source for genotyping susceptibility testing of Aspergillus fumigatus |
https://elbe.hki-jena.de/FunResDb/index.php |
| MARDy |
Mycology Antifungal Resistance Database |
http://mardy.net |
