Bayman P, JL Baker, Doster MA, Michailides TJ, Mahoney NE. 2002. Ochratoxin production by the Aspergillus ochraceus group and Aspergillus alliaceus. Appl Environ Microbiol. 68(5):2326–2329.BaymanPJLBakerDosterMAMichailidesTJMahoneyNE2002Ochratoxin production by the Aspergillus ochraceus group and Aspergillus alliaceusAppl Environ Microbiol68(5):2326232910.1128/AEM.68.5.2326-2329.2002Search in Google Scholar
Vanden Bossche H, Mackenzie DWR, Cauwenbergh G. 1988. Aspergillus and aspergillosis. New York (USA): Plenum Press.Vanden BosscheHMackenzieDWRCauwenberghG1988Aspergillus and aspergillosisNew York (USA)Plenum Press10.1007/978-1-4899-3505-2Search in Google Scholar
Chowdhury A, Singh K. 2005. Spectrum of fungal keratitis in North India. Cornea. 24:8–15.ChowdhuryASinghK2005Spectrum of fungal keratitis in North IndiaCornea2481510.1097/01.ico.0000126435.25751.20Search in Google Scholar
Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.DoyleJJDoyleJL1987A rapid DNA isolation procedure for small quantities of fresh leaf tissuePhytochem Bull191115Search in Google Scholar
Ejdys E. 2007. Fungi isolated in school buildings. Acta Mycol. 42(2):245–254.EjdysE2007Fungi isolated in school buildingsActa Mycol42(2):24525410.5586/am.2007.028Search in Google Scholar
FAO. 2006. Handbook of mycological methods. Project GCP/INT/743/CFC [Internet]. Rome (Italy): Food and Agriculture Organization of the United Nations; [cited 7 Jul 2016]. Available from: http://www.fao.org/fileadmin/user_upload/agns/pdf/coffee/Annex-F.2.pdfFAO2006Handbook of mycological methods. Project GCP/INT/743/CFC [Internet]Rome (Italy)Food and Agriculture Organization of the United Nations; [cited 7 Jul 2016]. Available from: http://www.fao.org/fileadmin/user_upload/agns/pdf/coffee/Annex-F.2.pdfSearch in Google Scholar
Gallo F. 1993. Aerobiological research and problems in libraries. Aerobiologia 9:117–130.GalloF1993Aerobiological research and problems in librariesAerobiologia911713010.1007/BF02066253Search in Google Scholar
Glass NL, Donaldson GC. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes. Appl Environ Microb. 61:1323–1330.GlassNLDonaldsonGC1995Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous AscomycetesAppl Environ Microb611323133010.1128/aem.61.4.1323-1330.1995Search in Google Scholar
Gock MA, Hocking AD, Pitt JI, Poulos PG. 2003. Influence of temperature, water activity and pH on growth of some xerophilic fungi. Int J Food Microbiol. 81(1):11–19.GockMAHockingADPittJIPoulosPG2003Influence of temperature, water activity and pH on growth of some xerophilic fungiInt J Food Microbiol81(1):111910.1016/S0168-1605(02)00166-6Search in Google Scholar
Gunawardena SA, Ranasinghe KP, Arseculeratne SN, Seimon CR, Ajello L. 1994. Survey of mycotic and bacterial keratitis in Sri Lanca. Mycopathologia. 127:77–81.GunawardenaSARanasingheKPArseculeratneSNSeimonCRAjelloL1994Survey of mycotic and bacterial keratitis in Sri LancaMycopathologia127778110.1007/BF011030627984216Search in Google Scholar
Gupta S, Radhakrishnan A, Raharja-Liu P, Lin G, Steinmetz LM, Gagneur J, Shina H. 2015. Temporal expression profiling identifies pathways mediating effect of causal variant on phenotype. PLoS Gent. 11(6):e1005195.GuptaSRadhakrishnanARaharja-LiuPLinGSteinmetzLMGagneurJShinaH2015Temporal expression profiling identifies pathways mediating effect of causal variant on phenotypePLoS Gent11(6):e100519510.1371/journal.pgen.1005195445459026039065Search in Google Scholar
Hamilos DL. 2010. Allergic fungal rhinitis and rhinosinusitis. Proc Am Thorac Soc. 7:245–252.HamilosDL2010Allergic fungal rhinitis and rhinosinusitisProc Am Thorac Soc724525210.1513/pats.200909-098AL20463255Search in Google Scholar
Kirk PM, Cannon PF, Minter DW, Stalpers JA. 2008. Ainsworth and Bisby’s dictionary of the fungi. Wallingford (UK): CAB International 771 p.KirkPMCannonPFMinterDWStalpersJA2008Ainsworth and Bisby’s dictionary of the fungiWallingford (UK)CAB International77110.1079/9780851998268.0000Search in Google Scholar
Krijgsheld P, Bleichrodt R, van Veluw GJ, Wang F, Müller WH, Dijksterhuis J, Wösten HAB. 2013. Development in Aspergillus. Stud Mycol. 74(1):1–29.KrijgsheldPBleichrodtRvan VeluwGJWangFMüllerWHDijksterhuisJWöstenHAB2013Development in AspergillusStud Mycol74(1):12910.3114/sim0006Search in Google Scholar
Kuba K. 2008. Molecular and immunological methods applied in diagnosis of mycoses. Wiad Parazytol. 54(3):187–197.KubaK2008Molecular and immunological methods applied in diagnosis of mycosesWiad Parazytol54(3):187197Search in Google Scholar
Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874.KumarSStecherGTamuraK2016MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasetsMol Biol Evol331870187410.1093/molbev/msw054Search in Google Scholar
Lugauskas A, Krikštaponis A, Šveistyle L. 2004. Airborne fungi in industrial environments – potential agents of respiratory diseases. Ann Agric Environ Med. 11:19–25.LugauskasAKrikštaponisAŠveistyleL2004Airborne fungi in industrial environments – potential agents of respiratory diseasesAnn Agric Environ Med111925Search in Google Scholar
Machowicz-Matejko E, Zalewska ED. 2015. Pharmacological substances in vitro in limiting growth and development of fungi Colletotrichum genera. J Ocul Pharmacol and Ther. 31(5):303–309.Machowicz-MatejkoEZalewskaED2015Pharmacological substances in vitro in limiting growth and development of fungi Colletotrichum generaJ Ocul Pharmacol and Ther31(5):30330910.1089/jop.2014.0128Search in Google Scholar
Mendiratta DK, Thamke D, Shukla AK, Narang P. 2005. Keratitis due to Colletotrichum dematium – A case report. Indian J Med Microbiol [Internet]. [cited 7 Jul 2016]; 23:56–58. Available from: http://www.ijmm.org/text.asp?2005/23/1/56/13876MendirattaDKThamkeDShuklaAKNarangP2005Keratitis due to Colletotrichum dematium – A case report. Indian J Med Microbiol [Internet]. [cited 7 Jul 2016];235658Available from: http://www.ijmm.org/text.asp?2005/23/1/56/1387610.1016/S0255-0857(21)02715-8Search in Google Scholar
Mitani A, Shiraishi A, Uno T, Miyamoto H, Hara Y, Yamaguchi M, Ohashi Y. 2009. In vivo and in vitro investigations of fungal keratitis caused by Colletotrichum gloeosporioides. J Ocul Pharmacol Ther. 25:563–565.MitaniAShiraishiAUnoTMiyamotoHHaraYYamaguchiMOhashiY2009In vivo and in vitro investigations of fungal keratitis caused by Colletotrichum gloeosporioidesJ Ocul Pharmacol Ther2556356510.1089/jop.2009.006920028265Search in Google Scholar
Morgulis A, Coulouris G, Raytselis Y, Madden TL, Agarwala R, Schäffer AA. 2008. Database indexing for production MegaBLAST searches. Bioinformatics. 15:1757–1764.MorgulisACoulourisGRaytselisYMaddenTLAgarwalaRSchäfferAA2008Database indexing for production MegaBLAST searchesBioinformatics151757176410.1093/bioinformatics/btn322269692118567917Search in Google Scholar
Nayak N. 2008. Fungal infections of the eye – laboratory diagnosis and treatment. Nepal Med Coll J. 10(1):48–63.NayakN2008Fungal infections of the eye – laboratory diagnosis and treatmentNepal Med Coll J10(1):4863Search in Google Scholar
Ogar A, Tylko G, Turnau K. 2015. Antifungal properties of silver nanoparticles against indoor mould growth. Sci Total Environ. 521–522:305–314.OgarATylkoGTurnauK2015Antifungal properties of silver nanoparticles against indoor mould growthSci Total Environ521–52230531410.1016/j.scitotenv.2015.03.10125847174Search in Google Scholar
Peterson SW. 2000. Phylogenetic relationships in Aspergillus based on rDNA sequence analysis. In: Samson RA, Pitt JI, editors. Integration of Modern Taxonomic Methods for Penicillium and Aspergillus Classification. Amsterdam (Netherlands): Harwood Acad. Publ. 323–355 p.PetersonSW2000Phylogenetic relationships in Aspergillus based on rDNA sequence analysis. In:SamsonRAPittJI, editors.Integration of Modern Taxonomic Methods for PenicilliumAspergillus ClassificationAmsterdam (Netherlands)Harwood Acad. Publ.323355Search in Google Scholar
Peterson SW. 2000. Phylogenetic analysis of Penicillium species based on ITS and LSU-rDNA nucleotide sequences. In: Samson RA, Pitt JI, editors. Integration of Modern Taxonomic Methods for Penicillium and Aspergillus Classification. Amsterdam (Netherlands): Harwood Acad. Publ. 163–178 p.PetersonSW2000Phylogenetic analysis of Penicillium species based on ITS and LSU-rDNA nucleotide sequences. In:SamsonRAPittJI, editors.Integration of Modern Taxonomic Methods for PenicilliumAspergillus ClassificationAmsterdam (Netherlands)Harwood Acad. Publ.163178Search in Google Scholar
Puerta F, Flores JM, Ruiz JA, Ruz JM, Campano F. 1999. Fungal diseases of the honeybee (Apis mellifera L.). In: Colin ME, Ball BV, Kilani M, editors. Bee disease diagnosis. Zaragoza (Spain): CIHEAM (Options Méditerranéennes: Série B. Etudes et Recherché; n. 25) 61–68 p. Available from: http://om.ciheam.org/om/pdf/b25/99600236.pdfPuertaFFloresJMRuizJARuzJMCampanoF1999Fungal diseases of the honeybee (Apis mellifera L.). In:ColinMEBallBVKilaniM, editors.Bee disease diagnosisZaragoza (Spain)CIHEAM (Options Méditerranéennes: Série B. Etudes et Recherché; n. 25)6168p. Available from: http://om.ciheam.org/om/pdf/b25/99600236.pdfSearch in Google Scholar
Pusz W, Kita W, Weber R. 2014. Microhabitat influences the occurrence of airborne fungi in copper mine in Poland. J Cave Karst Stud. 76(1):14–19.PuszWKitaWWeberR2014Microhabitat influences the occurrence of airborne fungi in copper mine in PolandJ Cave Karst Stud76(1):141910.4311/2013MB0101Search in Google Scholar
Quaedvlieg W, Verkley GJM, Shin H-D, Barreto RW, Alfenas AC, Swart WJ, Groenewald JZ, Crous PW. 2013. Sizing up Septoria. Stud Mycol. 75:307–390.QuaedvliegWVerkleyGJMShinH-DBarretoRWAlfenasACSwartWJGroenewaldJZCrousPW2013Sizing up SeptoriaStud Mycol7530739010.3114/sim0017371389024014902Search in Google Scholar
Samson RA, Yilmaz N, Houbraken J, Spierenburg H, Seifert KA, Peterson SW, Varga J, Frisvad JC. 2011. Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium. Stud Mycol. 70:159–183.SamsonRAYilmazNHoubrakenJSpierenburgHSeifertKAPetersonSWVargaJFrisvadJC2011Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus BiverticilliumStud Mycol7015918310.3114/sim.2011.70.04323391022308048Search in Google Scholar
Sandhu GS, Kline B, Stockman L, Roberts G. 1995. Molecular probes for diagnosis of fungal infections. J Clin Microbiol. 33: 2913–2919.SandhuGSKlineBStockmanLRobertsG1995Molecular probes for diagnosis of fungal infectionsJ Clin Microbiol332913291910.1128/jcm.33.11.2913-2919.19952286068576345Search in Google Scholar
Seyedmousavi S, Guillot J, Arné P, de Hoog GS, Mouton JW, Melchers WJ, Verweij PE. 2015. Aspergillus and aspergilloses in wild and domestic animals: a global health concern with parallels to human disease. Medicinal Mycol. 53:765–797.SeyedmousaviSGuillotJArnéPde HoogGSMoutonJWMelchersWJVerweijPE2015Aspergillus and aspergilloses in wild and domestic animals: a global health concern with parallels to human diseaseMedicinal Mycol5376579710.1093/mmy/myv06726316211Search in Google Scholar
Sharma S, Srinivasan M, George C. 1993. The current status of Fusarium species in mycotic keratitis in South India. Indian J Med Microbiol. 11:140–147.SharmaSSrinivasanMGeorgeC1993The current status of Fusarium species in mycotic keratitis in South IndiaIndian J Med Microbiol11140147Search in Google Scholar
Sklenář F, Jurjević Ž, Zalar P, Frisvad JC, Visagie CM, Kolařík M, Houbraken J, Chen AJ, Yilmaz N, Seifert KA, Coton M, et al. 2017. Phylogeny of xerophilic aspergilli (subgenus Aspergillus) and taxonomic revision of section Restricti. Stud Mycol. 88:161–236.SklenářFJurjevićŽZalarPFrisvadJCVisagieCMKolaříkMHoubrakenJChenAJYilmazNSeifertKACotonM2017Phylogeny of xerophilic aspergilli (subgenus Aspergillus) and taxonomic revision of section RestrictiStud Mycol8816123610.1016/j.simyco.2017.09.002567889229158611Search in Google Scholar
Skouboe P, Frisvad JC, Taylor JW, Lauritsen D, Boysen M, Rossen L. 1999. Phylogenetic analysis of nucleotide sequences from the ITS region of terverticillate Penicillium species. Mycol Res. 103(7):873–881.SkouboePFrisvadJCTaylorJWLauritsenDBoysenMRossenL1999Phylogenetic analysis of nucleotide sequences from the ITS region of terverticillate Penicillium speciesMycol Res103(7):87388110.1017/S0953756298007904Search in Google Scholar
Spegazzini C. 1896. Hongos de la Caña de Azúcar. Revista de la Facultad de Agronomía Universidade Nacional de La Plata. 2(19): 227–258.SpegazziniC1896Hongos de la Caña de Azúcar. Revista de la Facultad de Agronomía Universidade Nacional de La Plata2(19):227258Search in Google Scholar
Tamura M, Kawahara K, Sugiyama J. 2000. Molecular phylogeny of Aspergillus and associated teleomorphs in the Trichocomaceae. In: Samson RA, Pitt JI, editors. Integration of Modern Taxonomic Methods for Penicillium and Aspergillus Classification. Amsterdam (Netherlands): Harwood Acad. Publ. 369 p.TamuraMKawaharaKSugiyamaJ2000Molecular phylogeny of Aspergillus and associated teleomorphs in the Trichocomaceae. In:SamsonRAPittJI, editors.Integration of Modern Taxonomic Methods for Penicillium and Aspergillus ClassificationAmsterdam (Netherlands)Harwood Acad. Publ.369Search in Google Scholar
Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 10:512–526.TamuraKNeiM1993Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzeesMol Biol Evol10512526Search in Google Scholar
Thom Ch, Raper KB. 1945. A manual of the Aspergilli. Baltimore (USA): The Williams & Wilkins Company.ThomChRaperKB1945A manual of the AspergilliBaltimore (USA)The Williams & Wilkins Company10.1097/00010694-194510000-00008Search in Google Scholar
Thomas PA. 2003. Current perspectives on ophthalmic mycoses. Clin Microbiol Rev. 16(4):730–797.ThomasPA2003Current perspectives on ophthalmic mycosesClin Microbiol Rev16(4):73079710.1128/CMR.16.4.730-797.200320712714557297Search in Google Scholar
Walicka-Szyszko K, Sands D. 2015. The clinical presentations of pulmonary aspergillosis in children with cystic fibrosis-preliminary report. Dev. Period Med. 19(1):66–79.Walicka-SzyszkoKSandsD2015The clinical presentations of pulmonary aspergillosis in children with cystic fibrosis-preliminary reportDev. Period Med.19(1):6679Search in Google Scholar
White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR Protocols: a guide to methods and applications. New York (USA): Academic Press Inc. 315–322 p.WhiteTJBrunsTLeeSTaylorJW1990Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In:InnisMAGelfandDHSninskyJJWhiteTJ, editors.PCR Protocols: a guide to methods and applicationsNew York (USA)Academic Press Inc.31532210.1016/B978-0-12-372180-8.50042-1Search in Google Scholar
Verkley GJM, Quaedvlieg W, Shin HD, Crous PW. 2013. A new approach to species delimitation in Septoria. Stud Mycol. 75:213–305.VerkleyGJMQuaedvliegWShinHDCrousPW2013A new approach to species delimitation in SeptoriaStud Mycol7521330510.3114/sim0018371388924014901Search in Google Scholar
Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol. 172:4239–4246.VilgalysRHesterM1990Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus speciesJ Bacteriol1724239424610.1128/jb.172.8.4238-4246.19902132472376561Search in Google Scholar
Visagie CM, Hirooko Y, Tanney JB, Whitfield E, Mwange K, Meijer M, Amend AS, Seifert KA, Samson RA. 2014. Aspergillus, Penicillium and Talaromyces isolated from house dust samples collected around the world. Stud Mycol 78:63–139.VisagieCMHirookoYTanneyJBWhitfieldEMwangeKMeijerMAmendASSeifertKASamsonRA2014Aspergillus, Penicillium and Talaromyces isolated from house dust samples collected around the worldStud Mycol786313910.1016/j.simyco.2014.07.002425553625492981Search in Google Scholar
Zhang Z, Schwartz S, Wagner L, Miller W. 2000. A greedy algorithm for aligning DNA sequences. J Comput Biol. 7(1–2):203–214.ZhangZSchwartzSWagnerLMillerW2000A greedy algorithm for aligning DNA sequencesJ Comput Biol7(1–2):20321410.1089/1066527005008147810890397Search in Google Scholar
