First report and new molecular and morphological characterizations of root-knot nematode, Meloidogyne javanica, infecting ginger and long coriander in Vietnam
In the past, Meloidogyne species were identified using morphological and morphometric characterizations, and consequently, a large number of Meloidogyne spp. were described without molecular data (Karssen, 2002; Perry et al., 2009). Although molecular approach has facilitated the identification process of root-knot nematodes, both morphological and molecular characterizations showed that the three most important tropical root-knot nematodes are very closely related (Álvarez-Ortega et al., 2019; Perry et al., 2009). Remarkably, the study of Janssen et al. (2016) proved that some mtDNA genes, especially Nad5 mtDNA gene, are strongly linked with traditional esterase isozyme patterns, and therefore, it can be used as an efficient barcode marker for the reliable identification of tropical root-knot nematodes.
In this study, morphology and morphometric of second-stage juveniles, males, and females of Meloidogyne javanica on ginger and long coriander in Vietnam were provided for the first time. The study revealed new distribution and new host for M. javanica. Besides, molecular characterization of D2-D3 fragment of rDNA, ITS rDNA, and Nad5 mtDNA gene regions were given to support the morphological identification of M. javanica populations in this study.
Material and methods
Soil and root samples were collected from the upper 30 cm soil layer in the growing areas of ginger (Zingiber officinale Roscoe) and long coriander (Eryngium foetidum L.) from the Western Highlands in Vietnam. Vermiform nematodes were extracted using the modified Baermann tray method (Whitehead and Hemming, 1965) and swollen mature females were extracted directly from the galls with a stereomicroscope, using a scalpel and forceps (Perry et al., 2009). Subsequently, nematodes were fixed and prepared to make permanent slides following Nguyen et al. (2019). For morphological characterization, measurements and pictures were taken from permanent slides using Carl Zeiss Axio Lab. A1 light microscope equipped with a Zeiss Axiocam ERc5s digital camera. For molecular characterization, Multiplex-PCR using primers Mi2F4/Mi2R1, Far/Rar, and Fjav/Rjav was performed following Kiewnick et al. (2013) to quickly identify M. javanica from closely related species in the tropical root-knot nematode group. The D2-D3 region of 28S rRNA, ITS, and Nad5 mtDNA gene regions were amplified using D2A/D3B, Vrain2F/Vrain2R, and NAD5F2/NAD5R1 primers (Nguyen et al., 2019; Trinh et al., 2019). Forward and reverse sequences were assembled using Geneious R11 (www.geneious.com). The BLAST search was used to check for the similarities with other related sequences on GenBank (Altschul et al., 1997). Alignment between our Nad5 mtDNA sequences and 73 reference sequences in the study of Janssen et al. (2016) was created using Muscle in Geneious R11. Median-joining network in POPART 1.7 was used to create a haplotype network from the alignment (Bandelt et al., 1999; Leigh and Bryant, 2015). PPNID program was used to confirm the identification of these populations based on Nad5 mtDNA sequences (Qing et al., 2020).
Meloidogyne javanica (Chitwood, 1949; Treub, 1885) from Zingiber officinale Roscoe and Eryngium foetidum L. in Vietnam. A to F: Females. A: Entire body; B, C: Anterior end regions; D: Stylet and median bulb extracted from female; E, F: Perineal patterns. G to K: Second-stage juvenile. G, H: Anterior end region; I: Lateral field; J, K: Tail regions. (Scale bar: A: 200 µm; B-K: 10 µm).
Females: females of M. javanica in this study can be characterized by the following features: body pearly white, pear-shaped; lip region offset from body contour with two lip annuli; stylet robust, straight or slightly curved ventrally with rounded or oval stylet knobs directed backwardly; perineal pattern with two prominent lateral lines, dorsal arch squared and slightly narrowed or rounded; striae smooth.
Males: not found.
Second-stage juveniles: second-stage juveniles of M. javanica in this study can be characterized by: vermiform body tapering at both ends; slender stylet with rounded and small stylet knobs; secretory-excretory pore located behind level of median bulb; very long pharyngeal gland overlapping intestine ventrally; tail end pointed with rounded tail tip.
Molecular characterization
The Multiplex-PCR amplification products of M. javanica in this study were 670 bp, which is in agreement with the study of Kiewnick et al. (2013). The D2-D3 fragment of rDNA sequences of M. javanica from this study were 733 bp long and differ only 1 to 2 bp from other sequences of M. javanica in GenBank, while the ITS rDNA sequences of M. javanica from this study were 477 to 519 bp long and 100% similar to other sequences of M. javanica (accession number: JQ917440 and AY829374) from Iran and Spain.
Nad5 mtDNA sequences of M. javanica in this study were obtained with the length from 591 to 609 bp. The sequences of M. javanica from ginger and long coriander showed no variation compared to each other. In the network haplotype analysis, sequences of M. javanica from ginger and long coriander in Vietnam were grouped together and were only closely with other reference sequences of M. javanica from Janssen et al. (2016) (Fig. 2). The identification using PPNID program of Qing et al. (2020) has also confirmed that our studied root-knot nematodes belong to M. javanica.
Figure 2:
The haplotype network shows the relationships between different haplotypes, circle size is equivalent to the number of studied populations and branch length is equivalent to the number of mutations (shown as small black circles). All populations from the same species are displayed by the same colors (except for the populations of M. javanica from Vietnam in this study).
Remarks and discussion
Morphology and morphometrics of M. javanica in this study are largely in agreement with the description of M. javanica by Whitehead (1968), except for significant variations in body length and body width of females. However, it is well known that there exist considerable variations in measurements of adult root-knot nematodes between different populations because of their great body size (Whitehead, 1968; Ghaderi et al., 2020). Besides, morphology and morphometric of Vietnamese populations of M. javanica are also among variations of M. javanica from other countries (Table 1). In general, there exist morphological and genetic variations among populations of M. javanica and such variations are rarely influenced by geographical origin of nematodes and/or their host plants.
In spite of the high similarity between D2-D3 fragment of rDNA and ITS rDNA sequences of M. javanica in this study compared to sequences of M. javanica from GenBank, it is difficult to distinguish root-knot nematodes in the tropical group using only these DNA regions (Janssen et al., 2016). This study applied a haplotype network analysis based on the Nad5 sequences to determine the relationship between our nematode populations and the species in the tropical group. The closely related relationship between sequences from our study and reference sequences from Janssen et al. (2016) showed that our nematode populations should belong to M. javanica, and this identification was clearly supported by PPNID program of Qing et al. (2020). The results of this study showed the usefulness of the Nad5 haplotype-based designation as a valuable molecular tool for the identification of tropical root-knot nematode species (Ali et al., 2016; Janssen et al., 2016). Although the integrated approach used in studies of Janssen et al. (2016) and up-to-date authentic barcoding sequences used in PPNID of Qing et al. (2020) are reliable sources for identification of root-knot nematodes, we recommend using multiple approaches in identifying root-knot nematodes to ensure the quality of final result, especially the use of Nad5 mtDNA gene is recommended for identifying tropical root-knot nematodes.
