Otwarty dostęp

An Optimised Protocol for Fluorescent-dUTP Based SSR Genotyping and its Application to Genetic Mapping in Eucalyptus

 oraz    | 05 sie 2017

Zacytuj

Agrama, H. A., T. L. George and A. F. Salah (2002): Construction of genome map for Eucalyptus camaldulensis Dehn. Silvae Genet. 51: 201–206.Search in Google Scholar

Brondani, R. P. V., C. Brondani, R. Tarchini and D. Grattapaglia (1998): Development, characterization and mapping of microsatellite markers in Eucalyptus grandis and E. urophylla. Theor. Appl. Genet. 97: 816–827.Search in Google Scholar

Brondani, R. P. V., E. R. Williams, C. Brondani and D. Grattapaglia (2006): A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus. BMC Plant Biol. 6: 20.10.1186/1471-2229-6-20Search in Google Scholar

Busch, J. D., R. Benford, T. Pearson, E. Palmer, R. P. Balda and P. Keim (2009): Development of polymorphic tetranucleotide microsatellites for pinyon jays (Gymnorhinus yanocephalus). Conserv. Genet. 10: 689–691.Search in Google Scholar

Doyle, J. J. and D. J. Doyle (1990): Isolation of plant DNA from fresh tissue. Focus 12: 13–15.Search in Google Scholar

FAO (2000): Global forest resources assessment 2000 – main report. FAO, Rome.Search in Google Scholar

Gan, S., J. Shi, M. Li, K. Wu, J. Wu and J. Bai (2003): Moderate-density molecular maps of Eucalyptus urophylla S. T. Blake and E. tereticornis Smith genomes based on RAPD markers. Genetica 118: 59–67.10.1023/A:1022966018079Search in Google Scholar

Gilmore, S. and R. Peakall (2003): Isolation of microsatellite markers in Cannnabis sativa L. (marijuana). Mol. Ecol. Notes 3: 105–107.Search in Google Scholar

Gion, J.-M., P. Rech, J. Grima-Pettenati, J. Verhaegen and C. Plomion (2000): Mapping candidate genes in Eucalyptus with emphasis on lignification genes. Mol. Breed. 6: 441–449.10.1023/A:1026552515218Search in Google Scholar

Grattapaglia, D. and M. Kirst (2008): Eucalyptus applied genomics: from gene sequences to breeding tools. New Phytol. 179: 911–929.10.1111/j.1469-8137.2008.02503.xSearch in Google Scholar

Jones, R. C., D. A. Steane, B. M. Potts and R. E. Vaillancourt (2002): Microsatellite and morphological analysis of Eucalyptus globulus populations. Can. J. For. Res. 32: 59–66.Search in Google Scholar

Klevytska, A. M., L. B. Price, J. M. Schupp, P. L. Worsham, J. Wong and P. Keim (2001): Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. J. Clin. Microbiol. 39: 3179–3185.Search in Google Scholar

Lincoln, S., M. Daly and E. Lander (1992): Constructing genetic maps with MAPMAKER/EXP 3.0. Whitehead Institute technical report, 3rd edition. Whitehead Institute, Cambridge, MA.Search in Google Scholar

MacAvoy, E. S., L. M. McGibbon, J. P. Sainsbury, H. Lawrence, C. A. Wilson, C. H. Daugherty and G. K. Chambers (2007): Genetic variation in island populations of tuatara (Sphenodon spp) inferred from microsatellite markers. Conserv. Genet. 8: 305–318.Search in Google Scholar

Magnusson, P. K. E., E. Wilander and U. Gyllensten (1996): Analysis of loss of heterozygosity in microdissected tumor cells from cervical carcinoma using fluorescent dUTP labeling of PCR products. BioTechniques 21: 844–847.10.2144/96215st01Search in Google Scholar

Nagaraju, J., M. Kathirvel, R. R. Kumar, E. A. Siddiq and S. E. Hasnain (2002): Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proc. Natl. Acad. Sci. USA 99: 5836–5841.10.1073/pnas.042099099Search in Google Scholar

Nguyen, H. T. and X. Wu (2005): Molecular marker systems for genetic mapping. In: The handbook of plant genome mapping: genetic and physical mapping, eds. K. Meksem and G. Kahl. WILEY-VCH Verlag GmbH & Co. KgaA, Weinheim, Germany. 23–52.10.1002/3527603514.ch2Search in Google Scholar

Ottewell, K. M., S. C. Donnellan, G. F. Moran and D. C. Paton (2005): Multiplexed microsatellite markers for the genetic analysis of Eucalyptus leucoxylon (Myrtaceae) and their utility for ecological and breeding studies in other Eucalyptus species. J. Hered. 96: 445–451.10.1093/jhered/esi057Search in Google Scholar

Pashley, C. H., J. R. Ellis, D. E. McCauley and J. M. Burke (2006): EST databases as a source for molecular markers: lessons from Helianthus. J. Hered. 97: 381–388.10.1093/jhered/esl013Search in Google Scholar

Powell, W., G. C. Machray and J. Provan (1996): Polymorphisms revealed by simple sequence repeats. Trend. Plant Sci. 1: 215–222.10.1016/S1360-1385(96)86898-0Search in Google Scholar

Schlötterer, C. (2004): The evolution of molecular markers-just a matter of fashion? Nat. Rev. Genet. 5: 63–69.Search in Google Scholar

Schuelke, M. (2000): An economic method for the fluorescent labeling of PCR fragments. Nat. Biotech. 18: 233–234.Search in Google Scholar

Tauz, D. (1989): Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res. 16: 6463–6471.10.1093/nar/17.16.64633183412780284Search in Google Scholar

Thamarus, K., K. Groom, J. Murrell, M. Byrne and G. F. Moran (2002): A genetic linkage map for Eucalyptus globulus with candidate loci for wood, fibre and floral traits. Theor. Appl. Genet. 104: 379–387.Search in Google Scholar

Williams, R. D. and J. A. Dewoody (2003): Fluorescent dUTP helps characterize 10 novel tetranucleotide microsatellites from an enriched salamander (Ambystoma texanum) genomic library. Mol. Ecol. Notes 4: 17–19.Search in Google Scholar

Woolbright, S. A., S. P. DiFazio, T. Yin, G. D. Martinsen, X. Zhang, G. J. Allan, T. G. Whitham and P. Keim (2008): A dense linkage map of hybrid cottonwood (Populus fremontii × P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree. Heredity 100: 59–70.10.1038/sj.hdy.680106317895905Search in Google Scholar

Yasodha, R., R. Sumathi, P. Chezhian, S. Kavitha and M. Ghosh (2008): Eucalyptus microsatellites mined in silico: survey and evaluation. J. Genet. 87: 21–25.10.1007/s12041-008-0003-918560170Search in Google Scholar

eISSN:
2509-8934
Język:
Angielski
Częstotliwość wydawania:
Volume Open
Dziedziny czasopisma:
Life Sciences, Molecular Biology, Genetics, Biotechnology, Plant Science