SSR and SNP Markers for the Identification of Clones, Hybrids and Species Within the Genus Populus

BEKKAOUI, F., B. MANN and B. SCHROEDER (2003): Application of for the identification and management of hybrid poplar accessions. Agroforestry Systems 59: 53-59.10.1023/A:1026189103893Open DOISearch in Google Scholar

CHAMBERS, G. K. and E. S. MACAVOY (2000): Microsatellites: consensus and controversy. Comp Biochem Physiol B 126: 455-476.10.1016/S0305-0491(00)00233-9Search in Google Scholar

CHASE, M. W., N. SALAMIN, M. WILKINSON, J. M. DUNWELL, R. P. KESANAKURTHI, N. HAIDAR and V. SAVOLAINEN (2005): Land plants and DNA barcodes: short-term and long-term goals. Philos Trans R Soc Lond B Biol Sci 360: 1889-1895.10.1098/rstb.2005.1720160921816214746Search in Google Scholar

CHO, R. J., M. MINDRINOS, D. R. RICHARDS, R. J. SAPOLSKY et al. (1999): Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Nat Genet 23: 203-207.10.1038/1383310508518Open DOISearch in Google Scholar

CONSTABEL, C. P., L. YIP, J. J. PATTON and M. E. CHRISTOPHER (2000): Polyphenol oxidase from hybrid poplar. Cloning and expression in response to wounding and herbivory. Plant Physiol 124: 285-295.10.1104/pp.124.1.2855914310982443Search in Google Scholar

DAYANANDAN, S., O. P. RAJORA and K. S. BAWA (1998): Isolation and characterization of microsatellites in trembling aspen (Populus tremuloides). Theor Appl Genet 96: 950-956.10.1007/s001220050825Open DOISearch in Google Scholar

DEGEN, B. and M. FLADUNG (2008): Use of DNA-markers for tracing illegal logging. Landbauforschung - vTI Agriculture and Forestry Research 321: 6-14.Search in Google Scholar

ECKENWALDER, J. E. (1996): Systematics and evolution of Populus, pp 7-32. In: Biology of Populus and its Implications for Management and Conservation Part I, Chapter 1, edited by R. F. STETTLER, H. D. BRADSHAW JR, P. E. HEILMAN and T. M. HINCKLEY, NRC Research Press, National Research Council of Canada, Ottawa, ON, Canada.Search in Google Scholar

FLADUNG, M. and J. BUSCHBOM (2009): Identification of Single Nucleotide Polymorphisms (SNPs) in different Populus species. Trees 23: 1199-1212.10.1007/s00468-009-0359-3Search in Google Scholar

GARCIA-GIL, M. R., M. MIKKONEN and O. SAVOLAINEN (2003): Nucleotide diversity at two phytochrome loci along a latitudinal cline in Pinus sylvestris. Mol Ecol 12: 1195-1206.10.1046/j.1365-294X.2003.01826.x12694283Open DOISearch in Google Scholar

GILCHRIST, E. J., G. W. HAUGHN, C. C. YING, S. P. OTTO, J. ZHUANG, D. CHEUNG, B. HAMBERGER, F. ABOUTORABI, T. KALYNYAK, L. JOHNSON, J. BOHLMANN, B. E. ELLIS, C. J. DOUGLAS and Q. C. B. CRONK (2006): Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa. Mol Ecol 15: 1367-1378.10.1111/j.1365-294X.2006.02885.x16626459Open DOISearch in Google Scholar

HOLLINGSWORTH, M. L., A. A. CLARK, L. L. FORREST, J. RICHARDSON, R. T. PENNINGTON, D. G. LONG, R. COWAN, M. W. CHASE, M. GAUDEUL and P. M. HOLLINGSWORTH (2009): Selecting barcoding loci for plants: evaluation of seven candidate loci with specieslevel sampling in three divergent groups of land plants. Mol Ecol Resources 9: 439-457.10.1111/j.1755-0998.2008.02439.x21564673Open DOISearch in Google Scholar

INGVARSSON, P. K. (2005): Nucleotide polymorphism and linkage disequilibrium within and among natural populations of European aspen (Populus tremula L., Salicaceae). Genetics 169: 945-953.10.1534/genetics.104.034959144910915489521Search in Google Scholar

JONES, N., H. OUGHAM, H. THOMAS and I. PASAKINSKIENE (2009): Markers and mapping revisited: finding your gene. New Phytol 183: 935-966.10.1111/j.1469-8137.2009.02933.x19594696Search in Google Scholar

LEVINSON, G. and G. A. GUTMAN (1987): Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4: 203-221.Search in Google Scholar

LICHT, L. A. and J. G. ISEBRANDS (2005): Linking phytoremediated pollutant removal to biomass economic opportunities. Biomass & Bioenergy 28: 203-218.10.1016/j.biombioe.2004.08.015Open DOISearch in Google Scholar

LIESEBACH, H., V. SCHNECK and E. EWALD (2010): Clonalfingerprinting in the genus Populus L. by nuclear microsatellite loci regarding differences between sections, species and hybrids. Tree Genet Genome 6: 259-269.10.1007/s11295-009-0246-5Open DOISearch in Google Scholar

PAKULL, B., K. GROPPE, M. MEYER, T. MARKUSSSEN and M. FLADUNG (2009): Genetic linkage mapping in aspen (Populus tremula L. and P. tremuloides Michx.). Tree Genet Genom 5: 505-515.10.1007/s11295-009-0204-2Search in Google Scholar

RAHMAN, M. H., S. DAYANANDAN and O. P. RAJORA (2000): Microsatellite DNA markers in Populus tremuloides. Genome 43: 293-297.10.1139/g99-134Open DOISearch in Google Scholar

RAHMAN, H. M. and O. P. RAJORA (2002): Microsatellite DNA fingerprinting, differentiation and genetic relationships of clones, cultivars and varieties of six poplar species from three sections of the genus Populus. Genome 45: 1083-1094.10.1139/g02-07712502253Open DOISearch in Google Scholar

RAJORA, O. P. and M. H. RAHMAN (2003): Microsatellite DNA and RAPD fingerprinting, identification and genetic relationships of hybrid poplar (Populus x canadensis) cultivars. Theor Appl Genet 106: 470-477.10.1007/s00122-002-1082-212589547Search in Google Scholar

RATHMACHER, G., M. NIGGEMANN, M. KOHNEN, B. ZIEGENHAGEN and R. BIALOZYT (2010): Short-distance gene flow in Populus nigra L. accounts for small-scale spatial genetic structures: implications for in situ conservation measures. Conserv Genet 11 (4): 1327-1338.10.1007/s10592-009-9961-6Open DOISearch in Google Scholar

SELKOE, K. A. and R. J. TOONEN (2006): Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecol Letters 9: 615-629.10.1111/j.1461-0248.2006.00889.x16643306Search in Google Scholar

SMULDERS, M. J. M., R. BERINGEN, R. VOLOSYANCHUK, A. VANDEN BROECK, J. VAN DER SCHOOT, P. ARENS and B. VOSMAN (2008): Natural hybridisation between Populus nigra L. and P. x canadensis Moench. Hybrid off- spring competes for niches along the Rhine River in the Netherlands. Tree Genet Genom 4: 663-675.10.1007/s11295-008-0141-5Search in Google Scholar

TAUTZ, D., M. TRICK and G. A. DOVER (1986): Cryptic simplicity in DNA is a major source of genetic variation. Nature 322: 652-656.10.1038/322652a03748144Search in Google Scholar

TUSKAN, G. A., L. E. GUNTER, Z. K. YANG, T. M. YIN, M. M. SEWELL and S. P. DIFAZIO (2004): Characterization of Microsatellites Revealed by Genomic Sequencing of Populus trichocarpa. Can J For Res 34: 85-93.10.1139/x03-283Search in Google Scholar

TUSKAN, G. A., S. DIFAZIO, S. JANSSON, J. BOHLMANN et al (2006): The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604.10.1126/science.112869116973872Search in Google Scholar

VAN DER SCHOOT, J., M. POSPÍSKOVÁ, B. VOSMAN and M. J. M. SMULDERS (2000): Development and characterization of microsatellite markers in black poplar (Populus nigra L.). Theor Appl Genet 101: 317-322.10.1007/s001220051485Search in Google Scholar

VANDE WALLE, I., N. VAN CAMP, L. VAN DE CASTEELE, K. VERHEYEN and R. LEMEUR (2007): Short-rotation forestry of birch, maple, poplar and willow in Flanders (Belgium) II. Energy production and CO2 emission reduction potential. Biomass & Bioenergy 31: 276-283.10.1016/j.biombioe.2007.01.002Open DOISearch in Google Scholar

VANDEN BROECK, A., M. VILLAR, E. VAN BOCKSTAELE and J. VAN SLYCKEN (2005): Natural hybridization between cultivated poplars and their wild relatives: evidence and consequences for native poplar populations. Ann For Sci 62: 601-613.10.1051/forest:2005072Open DOISearch in Google Scholar

XING, C., F. R. SCHUMACHER, G. XING, Q. Lu, T. WANG and R. C. ELSTON (2005): Comparison of microsatellites, single- nucleotide polymorphisms (SNPs) and composite markers derived from SNPs in linkage analysis. BMC Genetics 6 (suppl. 1): S29.10.1186/1471-2156-6-S1-S29186675716451638Search in Google Scholar

ZHANG, D. Q. and Z. Y. ZHANG (2005): Single nucleotide polymorphisms (SNPs) discovery and linkage disequilibrium (LD) in forest tress. For Stud China 7: 1-14.10.1007/s11632-005-0024-xOpen DOISearch in Google Scholar

ZIEGENHAGEN, B., S. GNEUSS, G. RATHMACHER, I. LEYER, R. BIALOZYT, B. HEINZE and S. LIEPELT (2008): A fast andsimple genetic survey reveals the spread of poplar hybrids at a natural Elbe river site. Conserv Genet 9: 373-379.10.1007/s10592-007-9349-4Open DOISearch in Google Scholar