Gene ID | Function | Primer sequence (5’ to 3’) | Product size (bp) |
---|---|---|---|
CBG46_04720 | short-chain dehydrogenase | F: GCTAACCAAATCGCTGGCTA | 173 |
R: GTAACTCTTCCGGTTTGCCT | |||
CBG46_04260 | phosphoenolpyruvate carboxykinase | F: TCGAACGCATGAAAGCCTC | 188 |
R: ACCCGGTAATGCTTTAGGAA | |||
CBG46_02425 | bisphosphoglycerate-dependent phosphoglycerate mutase | F: TAAACCTTTTCACCGGCTGGA | 183 |
R: GCACCCATAATTGGTCGGAT | |||
CBG46_04200 | phosphogluconate dehydrogenase (NADP+-dependent decarboxylating) | F: GCATCCGAGCAATTCGACT | 187 |
R: GCCAATCCGCCATAGCATT | |||
CBG46_04725 | ATPase | F: TATCACTACATTGGCGGGCTA | 181 |
R: AATTTGATTCAGCGTCCAGT | |||
CBG46_02335 | bifunctional acetaldehyde-alcohol dehydrogenase | F: CCAACACGGCACATTAGCAT | 191 |
R: ATATCACGCCAACCGGATCG | |||
CBG46_03325 | L-threonine dehydrogenase | F: ATCGAAGCCTACGTATCCAC | 197 |
R: ATCGCATGAACATAGCCGAGA | |||
CBG46_08215 | ribose 5-phosphate isomerase B | F: GAGCGTGGAATTCTTACCTG | 160 |
R: CAATCACACGCTCACCGAA | |||
CBG46_05965 | 2-deoxyribose-5-phosphate aldolase | F: CTGCCGCGATTTAAACGTC | 174 |
R: GCACCGGCATTAATCATTGCT | |||
CBG46_07640 | sulfate ABC transporter substrate-binding protein | F: ATAGCAAGATTAACGGCACCC | 174 |
R: ACTTTTCATTCACGTCGAAGG | |||
CBG46_00190 | sulfurtransferase TusE | F: CAACAACAGATTGAAACCGA | 170 |
R: CCGGCGAAGTTTTGTATTCCT | |||
CBG46_00510 | pyruvate dehydrogenase | F: CAATCTTACGCCATGTTCGTG | 191 |
R: CGGCTTATCGGACATCACT | |||
16S rDNA | reference genes | F: ACTGGAACTGAGACACGGT | 187 |
R: GCTTCTTCTGTGGCTAACGTC |
Sample | Sample description | Total reads | Bases (bp) | Q20 (%) | Q30 (%) | Uniq mapped reads |
---|---|---|---|---|---|---|
CK_1 | Control replication 1 | 31,227,958 | 4,230,512,865 | 98.43 | 95.28 | 30,230,330 (96.81%) |
CK_2 | Control replication 2 | 29,665,406 | 4,045,453,270 | 98.33 | 95.01 | 28,618,805 (96.47%) |
CK_3 | Control replication 3 | 33,864,286 | 4,615,803,043 | 98.36 | 95.08 | 32,895,101 (97.14%) |
EG_1 | NaHSO3 treatment replication 1 | 35,209,904 | 4,761,438,256 | 98.37 | 95.10 | 33,873,034 (96.2%) |
EG_2 | NaHSO3 treatment replication 2 | 32,640,396 | 4,435,226,539 | 98.4 | 95.16 | 31,262,811 (95.78%) |
EG_3 | NaHSO3 treatment replication 3 | 35,564,774 | 4,849,551,152 | 98.33 | 95.00 | 34,078,998 (95.82%) |