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Akagawa S, Tsuji S, Onuma C, Akagawa Y, Yamaguchi T, Yamagishi M, Yamanouchi S, Kimata T, Sekiya S, Ohashi A, et al. Effect of delivery mode and nutrition on gut microbiota in neonates. Ann Nutr Metab. 2019;74(2):132–139. https://doi.org/10.1159/000496427AkagawaSTsujiSOnumaCAkagawaYYamaguchiTYamagishiMYamanouchiSKimataTSekiyaSOhashiA. Effect of delivery mode and nutrition on gut microbiota in neonates. 2019;74(2):132–139. https://doi.org/10.1159/00049642710.1159/00049642730716730Search in Google Scholar
Arboleya S, Sánchez B, Milani C, Duranti S, Solís G, Fernández N, de los Reyes-Gavilán CG, Ventura M, Margolles A, Gueimonde M. Intestinal microbiota development in preterm neonates and effect of perinatal antibiotics. J Pediatr. 2015 Mar;166(3):538–544. https://doi.org/10.1016/j.jpeds.2014.09.041ArboleyaSSánchezBMilaniCDurantiSSolísGFernándezNde los Reyes-GavilánCGVenturaMMargollesAGueimondeM. Intestinal microbiota development in preterm neonates and effect of perinatal antibiotics. 2015Mar;166(3):538–544. https://doi.org/10.1016/j.jpeds.2014.09.04110.1016/j.jpeds.2014.09.04125444008Search in Google Scholar
Bäckhed F, Roswall J, Peng Y, Feng Q, Jia H, Kovatcheva-Datchary P, Li Y, Xia Y, Xie H, Zhong H, et al. Dynamics and stabilization of the human gut microbiome during the first year of life. Cell Host Microbe. 2015 Jun;17(6):852. https://doi.org/10.1016/j.chom.2015.05.012BäckhedFRoswallJPengYFengQJiaHKovatcheva-DatcharyPLiYXiaYXieHZhongH. Dynamics and stabilization of the human gut microbiome during the first year of life. 2015Jun;17(6):852. https://doi.org/10.1016/j.chom.2015.05.01210.1016/j.chom.2015.05.01226308884Search in Google Scholar
Baumfeld Y, Walfisch A, Wainstock T, Segal I, Sergienko R, Landau D, Sheiner E. Elective cesarean delivery at term and the long-term risk for respiratory morbidity of the offspring. Eur J Pediatr. 2018 Nov;177(11):1653–1659. https://doi.org/10.1007/s00431-018-3225-8BaumfeldYWalfischAWainstockTSegalISergienkoRLandauDSheinerE. Elective cesarean delivery at term and the long-term risk for respiratory morbidity of the offspring. 2018Nov;177(11):1653–1659. https://doi.org/10.1007/s00431-018-3225-810.1007/s00431-018-3225-830091110Search in Google Scholar
Blaser MJ, Falkow S. What are the consequences of the disappearing human microbiota? Nat Rev Microbiol. 2009 Dec;7(12):887–894. https://doi.org/10.1038/nrmicro2245BlaserMJFalkowS. What are the consequences of the disappearing human microbiota?2009Dec;7(12):887–894. https://doi.org/10.1038/nrmicro224510.1038/nrmicro224519898491Search in Google Scholar
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci USA. 2011 Mar 15;108 Supplement_1:4516–4522. https://doi.org/10.1073/pnas.1000080107CaporasoJGLauberCLWaltersWABerg-LyonsDLozuponeCATurnbaughPJFiererNKnightR. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. 2011Mar 15;108Supplement_1:4516–4522. https://doi.org/10.1073/pnas.100008010710.1073/pnas.1000080107306359920534432Search in Google Scholar
Chu DM, Ma J, Prince AL, Antony KM, Seferovic MD, Aagaard KM. Maturation of the infant microbiome community structure and function across multiple body sites and in relation to mode of delivery. Nat Med. 2017 Mar;23(3):314–326. https://doi.org/10.1038/nm.4272ChuDMMaJPrinceALAntonyKMSeferovicMDAagaardKM. Maturation of the infant microbiome community structure and function across multiple body sites and in relation to mode of delivery. 2017Mar;23(3):314–326. https://doi.org/10.1038/nm.427210.1038/nm.4272534590728112736Search in Google Scholar
Fallani M, Young D, Scott J, Norin E, Amarri S, Adam R, Aguilera M, Khanna S, Gil A, Edwards CA, et al. Other Members of the INFABIO Team. Intestinal microbiota of 6-week-old infants across Europe: geographic influence beyond delivery mode, breast-feeding, and antibiotics. J Pediatr Gastroenterol Nutr. 2010 Jul;51(1):77–84. https://doi.org/10.1097/MPG.0b013e3181d1b11eFallaniMYoungDScottJNorinEAmarriSAdamRAguileraMKhannaSGilAEdwardsCAOther Members of the INFABIO Team. Intestinal microbiota of 6-week-old infants across Europe: geographic influence beyond delivery mode, breast-feeding, and antibiotics. 2010Jul;51(1):77–84. https://doi.org/10.1097/MPG.0b013e3181d1b11e10.1097/MPG.0b013e3181d1b11e20479681Search in Google Scholar
Fukuda S, Toh H, Hase K, Oshima K, Nakanishi Y, Yoshimura K, Tobe T, Clarke JM, Topping DL, Suzuki T, et al. Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature. 2011 Jan;469(7331):543–547. https://doi.org/10.1038/nature09646FukudaSTohHHaseKOshimaKNakanishiYYoshimuraKTobeTClarkeJMToppingDLSuzukiT. Bifidobacteria can protect from enteropathogenic infection through production of acetate. 2011Jan;469(7331):543–547. https://doi.org/10.1038/nature0964610.1038/nature0964621270894Search in Google Scholar
Hegazy AN, West NR, Stubbington MJT, Wendt E, Suijker KIM, Datsi A, This S, Danne C, Campion S, Duncan SH, et al. Circulating and tissue-resident CD4+ T cells with reactivity to intestinal microbiota are abundant in healthy individuals and function is altered during inflammation. Gastroenterology. 2017 Nov;153(5): 1320–1337.e16. https://doi.org/10.1053/j.gastro.2017.07.047HegazyANWestNRStubbingtonMJTWendtESuijkerKIMDatsiAThisSDanneCCampionSDuncanSH. Circulating and tissue-resident CD4+ T cells with reactivity to intestinal microbiota are abundant in healthy individuals and function is altered during inflammation. 2017Nov;153(5): 1320–1337.e16. https://doi.org/10.1053/j.gastro.2017.07.04710.1053/j.gastro.2017.07.047568732028782508Search in Google Scholar
Hoyles L, McCartney AL. What do we mean when we refer to Bacteroidetes populations in the human gastrointestinal microbiota? FEMS Microbiol Lett. 2009 Oct;299(2):175–183. https://doi.org/10.1111/j.1574-6968.2009.01741.xHoylesLMcCartneyAL. What do we mean when we refer to Bacteroidetes populations in the human gastrointestinal microbiota?2009Oct;299(2):175–183. https://doi.org/10.1111/j.1574-6968.2009.01741.x10.1111/j.1574-6968.2009.01741.x19694813Search in Google Scholar
Madan JC, Hoen AG, Lundgren SN, Farzan SF, Cottingham KL, Morrison HG, Sogin ML, Li H, Moore JH, Karagas MR. Association of cesarean delivery and formula supplementation with the intestinal microbiome of 6-week-old infants. JAMA Pediatr. 2016 Mar 01; 170(3):212–219. https://doi.org/10.1001/jamapediatrics.2015.3732MadanJCHoenAGLundgrenSNFarzanSFCottinghamKLMorrisonHGSoginMLLiHMooreJHKaragasMR. Association of cesarean delivery and formula supplementation with the intestinal microbiome of 6-week-old infants. 2016Mar 01; 170(3):212–219. https://doi.org/10.1001/jamapediatrics.2015.3732478319426752321Search in Google Scholar
Meisel JS, Sfyroera G, Bartow-McKenney C, Gimblet C, Bugayev J, Horwinski J, Kim B, Brestoff JR, Tyldsley AS, Zheng Q, et al. Commensal microbiota modulate gene expression in the skin. Microbiome. 2018 Dec;6(1):20. https://doi.org/10.1186/s40168-018-0404-9MeiselJSSfyroeraGBartow-McKenneyCGimbletCBugayevJHorwinskiJKimBBrestoffJRTyldsleyASZhengQ. Commensal microbiota modulate gene expression in the skin. 2018Dec;6(1):20. https://doi.org/10.1186/s40168-018-0404-910.1186/s40168-018-0404-9578970929378633Search in Google Scholar
Mueller NT, Zhang M, Hoyo C, Østbye T, Benjamin-Neelon SE. Does cesarean delivery impact infant weight gain and adiposity over the first year of life? Int J Obes. 2019 Aug;43(8):1549–1555. https://doi.org/10.1038/s41366-018-0239-2MuellerNTZhangMHoyoCØstbyeTBenjamin-NeelonSE. Does cesarean delivery impact infant weight gain and adiposity over the first year of life?2019Aug;43(8):1549–1555. https://doi.org/10.1038/s41366-018-0239-210.1038/s41366-018-0239-2647669430349009Search in Google Scholar
Nagpal R, Tsuji H, Takahashi T, Nomoto K, Kawashima K, Nagata S, Yamashiro Y. Ontogenesis of the gut microbiota composition in healthy, full-term, vaginally born and breast-fed infants over the first 3 years of life: a quantitative bird’s-eye view. Front Microbiol. 2017 Jul 21;8:1388. https://doi.org/10.3389/fmicb.2017.01388NagpalRTsujiHTakahashiTNomotoKKawashimaKNagataSYamashiroY. Ontogenesis of the gut microbiota composition in healthy, full-term, vaginally born and breast-fed infants over the first 3 years of life: a quantitative bird’s-eye view. 2017Jul 21;8:1388. https://doi.org/10.3389/fmicb.2017.0138810.3389/fmicb.2017.01388551961628785253Search in Google Scholar
Reyman M, van Houten MA, van Baarle D, Bosch AATM, Man WH, Chu MLJN, Arp K, Watson RL, Sanders EAM, Fuentes S, et al. Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life. Nat Commun. 2019 Dec;10(1):4997. https://doi.org/10.1038/s41467-019-13014-7ReymanMvan HoutenMAvan BaarleDBoschAATMManWHChuMLJNArpKWatsonRLSandersEAMFuentesS. Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life. 2019Dec;10(1):4997. https://doi.org/10.1038/s41467-019-13014-710.1038/s41467-019-13014-7682515031676793Search in Google Scholar
Savage JH, Lee-Sarwar KA, Sordillo JE, Lange NE, Zhou Y, O’Connor GT, Sandel M, Bacharier LB, Zeiger R, Sodergren E, et al. Diet during pregnancy and infancy and the infant intestinal microbiome. J Pediatr. 2018 Dec;203:47-54.e4. https://doi.org/10.1016/j.jpeds.2018.07.066SavageJHLee-SarwarKASordilloJELangeNEZhouYO’ConnorGTSandelMBacharierLBZeigerRSodergrenE. Diet during pregnancy and infancy and the infant intestinal microbiome. 2018Dec;203:47-54.e4. https://doi.org/10.1016/j.jpeds.2018.07.06610.1016/j.jpeds.2018.07.066637179930173873Search in Google Scholar
Smith SB, Ravel J. The vaginal microbiota, host defence and reproductive physiology. J Physiol. 2017 Jan 15;595(2):451–463. https://doi.org/10.1113/JP271694SmithSBRavelJ. The vaginal microbiota, host defence and reproductive physiology. 2017Jan 15;595(2):451–463. https://doi.org/10.1113/JP27169410.1113/JP271694523365327373840Search in Google Scholar
Sugahara H, Odamaki T, Hashikura N, Abe F, Xiao J. Differences in folate production by bifidobacteria of different origins. Biosci Microbiota Food Health. 2015;34(4):87–93. https://doi.org/10.12938/bmfh.2015-003SugaharaHOdamakiTHashikuraNAbeFXiaoJ. Differences in folate production by bifidobacteria of different origins. 2015;34(4):87–93. https://doi.org/10.12938/bmfh.2015-00310.12938/bmfh.2015-003465407126594608Search in Google Scholar
Tamburini S, Shen N, Wu HC, Clemente JC. The microbiome in early life: implications for health outcomes. Nat Med. 2016 Jul;22(7):713–722. https://doi.org/10.1038/nm.4142TamburiniSShenNWuHCClementeJC. The microbiome in early life: implications for health outcomes. 2016Jul;22(7):713–722. https://doi.org/10.1038/nm.414210.1038/nm.414227387886Search in Google Scholar
Uberos J. Perinatal microbiota: review of its importance in newborn health. Arch Argent Pediatr. 2020 Jun;118(3):e265–e270. https://doi.org/10.5546/aap.2020.eng.e265UberosJ. Perinatal microbiota: review of its importance in newborn health. 2020Jun;118(3):e265–e270. https://doi.org/10.5546/aap.2020.eng.e26510.5546/aap.2020.eng.e26532470263Search in Google Scholar
Wampach L, Heintz-Buschart A, Hogan A, Muller EEL, Narayanasamy S, Laczny CC, Hugerth LW, Bindl L, Bottu J, Andersson AF, et al. Colonization and succession within the human gut microbiome by archaea, bacteria, and microeukaryotes during the first year of life. Front Microbiol. 2017 May 02;8:738. https://doi.org/10.3389/fmicb.2017.00738WampachLHeintz-BuschartAHoganAMullerEELNarayanasamySLacznyCCHugerthLWBindlLBottuJAnderssonAF. Colonization and succession within the human gut microbiome by archaea, bacteria, and microeukaryotes during the first year of life. 2017May 02;8:738. https://doi.org/10.3389/fmicb.2017.0073810.3389/fmicb.2017.00738541141928512451Search in Google Scholar
Wopereis H, Oozeer R, Knipping K, Belzer C, Knol J. The first thousand days – intestinal microbiology of early life: establishing a symbiosis. Pediatr Allergy Immunol. 2014 Aug;25(5):428–438. https://doi.org/10.1111/pai.12232WopereisHOozeerRKnippingKBelzerCKnolJ. The first thousand days – intestinal microbiology of early life: establishing a symbiosis. 2014Aug;25(5):428–438. https://doi.org/10.1111/pai.1223210.1111/pai.1223224899389Search in Google Scholar
Yang B, Chen Y, Stanton C, Ross RP, Lee YK, Zhao J, Zhang H, Chen W. Bifidobacterium and Lactobacillus composition at species level and gut microbiota diversity in infants before 6 weeks. Int J Mol Sci. 2019 Jul 05;20(13):3306. https://doi.org/10.3390/ijms20133306YangBChenYStantonCRossRPLeeYKZhaoJZhangHChenW. Bifidobacterium and Lactobacillus composition at species level and gut microbiota diversity in infants before 6 weeks. 2019Jul 05;20(13):3306. https://doi.org/10.3390/ijms2013330610.3390/ijms20133306665086031284413Search in Google Scholar
Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl Environ Microbiol. 2009 Aug 15;75(16):5227–5236. https://doi.org/10.1128/AEM.00592-09YoussefNSheikCSKrumholzLRNajarFZRoeBAElshahedMS. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. 2009Aug 15;75(16):5227–5236. https://doi.org/10.1128/AEM.00592-0910.1128/AEM.00592-09272544819561178Search in Google Scholar