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Genetic Structure of Perch Perca Fluviatilis (L.) Populations in Latvian Rivers that are Fragmented (Daugava) and Non-Fragmented (Lielupe) By Hydroelectric Dams

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Abdul-Muneer, P. M. (2014). Application of microsatellite markers in conservation genetics and fisheries management: Recent advances in population structure analysis and conservation strategies. Genet. Res. Int., 2014, 691759.10.1155/2014/691759399793224808959 Search in Google Scholar

Aljanabi, S. M., Martinez, I. (1997). Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res., 25 (22), 4692–4693.10.1093/nar/25.22.46921470789358185 Search in Google Scholar

Altukhov, Yu. P., Salmenkova, E. A., Omelchenko, V. T. (2000). Salmonid Fishes: Population Biology, Genetics and Management. John Wiley & Sons. 368 pp.10.1002/9780470999530 Search in Google Scholar

Bahri-Sfar, L., Lemaire, C., Kalthoum, Ben Hassine, O., Bonhomme, F. (2000). Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite polymorphism. Proc. R. Soc. B., 267 (1446), 929–935. Search in Google Scholar

Barton, N. H., Slatkin, M. (1986). A quasi-equilibrium theory of the distribution of rare alleles in a subdivided population. Heredity, 56 (3), 409.10.1038/hdy.1986.633733460 Search in Google Scholar

Behrmann-Godel, J., Gerlach, G. (2008). First evidence for postzygotic reproductive isolation between two populations of Eurasian perch (Perca fluviatilis L.) within Lake Constance. Front. Zool., 5 (1), 3. Search in Google Scholar

Bourret, V., Couture, P., Campbell, P. G., Bernatchez, L. (2008). Evolutionary ecotoxicology of wild yellow perch (Perca flavescens) populations chronically exposed to a polymetallic gradient. Aquat. Toxicol., 86 (1), 76–90.10.1016/j.aquatox.2007.10.00318031837 Search in Google Scholar

Butkauskas, D., Ragauskas, A., Sruoga, A., Kesminas, V., Ložys, L., Rashal, I., Tzeng, W.-N., Žalakevičius, M. (2012). Investigations into genetic diversity of the perch inhabiting Ignalina nuclear power plant cooler and other inland water bodies of Lithuania on the basis of mtDNA analysis. Veterinarija ir Zootechnika, 60 (82), 7–12. Search in Google Scholar

Cornuet, J. M., Piry, S., Luikart, G., Estoup, A., Solignac, M. (1997). New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics, 153 (4), 1989–2000. Search in Google Scholar

Dannewitz, J., Maes, G. E., Johansson, L., Wickström, H., Volckaert, F. A., Järvi, T. (2005). Panmixia in the European eel: A matter of time. Proc. R. Soc. B, 272 (1568), 1129–1137. Search in Google Scholar

Dehais, C., Eudeline, R., Berrebi, P., Argillier, C. (2010). Microgeographic genetic isolation in chub (Cyprinidae: Squalius cephalus) population of the Durance River: Estimating fragmentation by dams. Ecol. Freshw. Fish., 19 (2), 267–278.10.1111/j.1600-0633.2010.00411.x Search in Google Scholar

Dynesius, M., Nilsson, C. (1994). Fragmentation and flow regulation of river systems in the northern third of the world. Science, 266 (5186), 753–762. Search in Google Scholar

Earl, D. A. (2012). STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour., 4 (2), 359–361.10.1007/s12686-011-9548-7 Search in Google Scholar

Ellstrand, N. C., Elam, D. R. (1993). Population genetic consequences of small population size: Implications for plant conservation. Annu. Rev. Ecol. Syst., 24 (1), 217–242.10.1146/annurev.es.24.110193.001245 Search in Google Scholar

Fokina, O., Grauda, D., Rashal, I. (2015). Genetic diversity of two perch Perca fluviatilis populations of the Latgale region. In: Environment. Technology. Resources. Proceedings of the 10th International Scientific and Practical Conference, 1820 June, 2015, Rēzekne, Latvia, Volume II, pp. 96–98.10.17770/etr2015vol2.280 Search in Google Scholar

Gouskov, A., Reyes, M., Wirthner-Bitterlin, L., Vorburger, C. (2016). Fish population genetic structure shaped by hydroelectric power plants in the upper Rhine catchment. Evol. Appl., 9 (2), 394–408.10.1111/eva.12339472107926834832 Search in Google Scholar

Gouskov, A., Vorburger, C. (2016). Postglacial recolonizations, watershed crossings and human translocations shape the distribution of chub lineages around the Swiss Alps. BMC Evol. Biol., 16, 185–198.10.1186/s12862-016-0750-9501712327612944 Search in Google Scholar

Gum, B., Gross, R., Kuehn, R. (2005). Mitochondrial and nuclear DNA phylogeography of European grayling (Thymallus thymallus): Evidence for secondary contact zones in central Europe. Mol. Ecol., 14 (6), 1707–1725.10.1111/j.1365-294X.2005.02520.x15836644 Search in Google Scholar

Heermann, L., Emmrich, M., Heynen, M., Dorow M., König U., Borcherding, J., Arlinghaus R. (2013). Explaining recreationalangling catch rates of Eurasian perch Perca fluviatilis: the role of natural andfishing-related environmental factors. Fish. Manage. Ecol., 20, 187–200.10.1111/fme.12000 Search in Google Scholar

Hubisz, M. J., Falush, D., Stephens, M., Pritchard, J. K. (2009). Inferring weak population structure with the assistance of sample group information. Mol. Ecol. Res., 9 (5), 1322–1332.10.1111/j.1755-0998.2009.02591.x351802521564903 Search in Google Scholar

Khedkar, G. D., Jamdade, R., Naik, S., David, L., Haymer, D. (2014). DNA barcodes for the fishes of the Narmada, one of India’s longest rivers. PLoS One, 9 (7), e101460.10.1371/journal.pone.0101460408158724991801 Search in Google Scholar

Kokina, I., Rubeniņa, I., Bankovska, L., Mickeviča, I., Gavarāne, I. (2018). Case study of microsatellite polymorphism of European perch in selected commercially important lakes of Latvia. Biologia, 73 (3), 273–280.10.2478/s11756-018-0035-4 Search in Google Scholar

Langella, O. (2005). Populations, a free population genetic software (1990–2005). http://bioinformatics.org/~tryphon/populations/ (accessed 17 February 2019). Search in Google Scholar

Leclerc, D., Wirth, T., Bernatchez, L. (2000). Isolation and characterization of microsatellite loci in the yellow perch (Perca flavescens), and cross-species amplification within the family Percidae. Mol. Ecol., 9 (7), 995–997.10.1046/j.1365-294x.2000.00939-3.x10886663 Search in Google Scholar

Li, L., Wang, H. P., Givens, C., Czesny, S., Brown, B. (2007). Isolation and characterization of microsatellites in yellow perch (Perca flavescens). Mol. Ecol. Notes, 7 (4), 600–603.10.1111/j.1471-8286.2006.01645.x Search in Google Scholar

Lieb, D. A., Carline, R. F. (2000). Effects of urban runoff from a detention pond on water quality, temperature and caged Gammarus minus (Say) (Amphipoda) in a headwater stream. Hydrobiologia, 441 (1), 107–116.10.1023/A:1017550321076 Search in Google Scholar

Lynch, M., Conery, J., Burger, R. (1995). Mutation accumulation and the extinction of small populations. Amer. Nat., 146 (4), 489–518.10.1086/285812 Search in Google Scholar

Morrissey, M. B., de Kerckhove, D. T. (2009). The maintenance of genetic variation due to asymmetric gene flow in dendritic metapopulations. Amer. Nat., 174 6), 875–889.10.1086/64831119860541 Search in Google Scholar

Nagylaki, T. (1998). Fixation indices in subdivided populations. Genetics, 148 (3), 1325–1332.10.1093/genetics/148.3.132514600349539445 Search in Google Scholar

Nei, M. (1973). Analysis of gene diversity in subdivided populations. Proc. Nat. Acad. Sci. USA, 70 (12), 3321–3323.10.1073/pnas.70.12.33214272284519626 Search in Google Scholar

Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89 (3), 583–590.10.1093/genetics/89.3.583121385517248844 Search in Google Scholar

Nei, M. (1987). Molecular Evolutionary Genetics. Columbia University Press, New York. 512 pp.10.7312/nei-92038 Search in Google Scholar

Nei, M., F. Tajima, Tateno, Y. (1983). Accuracy of estimated phylogenetic trees from molecular data. 2. Genefrequency data. J. Mol. Evol., 19, 153–170.10.1007/BF023007536571220 Search in Google Scholar

Nei, M., Takezaki, N. (1994). Estimation of genetic distances and phylogenetic trees from DNA analysis. In: Proceedings of the 5th World Congress on Genetics Applied to Livestock Production. Gene Mapping; Polymorphisms; Disease Genetic Markers; Marker Assisted Selection; Gene Expression; Transgenes; Non-convention, 7–12 August 1994. Ontario, Canada, Vol. 21 pp. 405–412. Search in Google Scholar

Nelson J. S. (2006). Fishes of the World. Fourth edition. John Wiley Sons, Hoboken. 624 pp Search in Google Scholar

Nfon, E., Cousins, I. T., Järvinen, O., Mukherjee, A. B., Verta, M., Broman, D. (2009). Trophodynamics of mercury and other trace elements in a pelagic food chain from the Baltic Sea. Sci. Total Environ., 407 (24), 6267–6274.10.1016/j.scitotenv.2009.08.03219767059 Search in Google Scholar

O’Reilly 3rd, C. A., Tushman, M. L. (2004). The ambidextrous organization. Harvard Bus Rev., 82 (4), 74. Search in Google Scholar

Page, R. D. M. (1996). TreeView: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosc., 12, 357–358. Search in Google Scholar

Paz-Vinas, I., Blanchet, S. (2015). Dendritic connectivity shapes spatial patterns of genetic diversity: A simulation-based study. J. Evol. Biol., 28 (4), 986–994.10.1111/jeb.1262625808422 Search in Google Scholar

Peakall, R. O. D., Smouse, P. E. (2006). GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes, 6 (1), 288–295. Search in Google Scholar

Pukk, L., Kuparinen, A., Leili, J., Gross, R., Vasemägi, A. (2013). Genetic and life-history changes associated with fisheries-induced population collapse. Evol. Appl., 6 (5), 749–760.10.1111/eva.12060577912829387163 Search in Google Scholar

Pukk, L., Gross, R., Vetemaa, M., Vasemägi, A. (2016). Genetic discrimination of brackish and freshwater populations of Eurasian perch (Perca fluviatilis L.) in the Baltic Sea drainage: Implications for fish forensics. Fisher. Res., 183, 155–164.10.1016/j.fishres.2016.05.027 Search in Google Scholar

Ragauskas, A., Butkauskas, D. Sruoga, A. (2014). Investigation into genetic diversity of perch inhabiting Lake Drūkšiai and other water bodies of Lithuania on the basis of mtDNA analysis. Zool. Ecol., 24 (2), 154–159.10.1080/21658005.2014.925232 Search in Google Scholar

Richard, G.-F., Kerrest, A., Dujon, B. (2008). Comparative genomics and molecular dynamics of DNA repeats in eukaryotes. Microbiol. Mol. Biol., 72 (4), 686–727.10.1128/MMBR.00011-08259356419052325 Search in Google Scholar

Seeb, J. E., Carvalho, G., Hauser, L., Naish, K., Roberts, S. Seeb, L. W. (2011). Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms. Mol. Ecol. Res., 11, 1–8.10.1111/j.1755-0998.2010.02979.x21429158 Search in Google Scholar

Shinya, M., Tsuchinaga, T., Kitano, M., Yamada, Y., Ishikawa, M. (2000). Characterization of heavy metals and polycyclic aromatic hydrocarbons in urban highway runoff. Water Sci. Technol., 42 (7–8), 201–208.10.2166/wst.2000.0570 Search in Google Scholar

Slatkin, M. (1985). Rare alleles as indicators of gene flow. Evolution, 39 (1), 53–65. Search in Google Scholar

Sruoga, A., Butkauskas, D., Rashal, I. (2008). Evaluation of genetic diversity of perch (Perca fluviatilis) and pikeperch (Sander lucioperca) populations from Curonian lagoon and inshore waters of the Baltic Sea. Acta Biol. Univ. Daugavp., 8 (1), 81–88. Search in Google Scholar

Svanbäck, R., Eklöv, P. (2006). Genetic variation and phenotypic plasticity: Causes of morphological variation in Eurasian perch. Evol. Ecol. Res., 8 (1), 37–49. Search in Google Scholar

Škute, N. Oreha, J. (2016). Evaluation of some microsatellite markers variability in the study of genetic structure of vendace (Coregonus albula (L.) populations from Latvian lakes. Contemp. Probl. Ecol., 9 (2), 157–165. Search in Google Scholar

Van Oosterhout, C., Hutchinson, W. F., Wills, D. P., Shipley, P. (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes, 4 (3), 535–538.10.1111/j.1471-8286.2004.00684.x Search in Google Scholar

Wollebæk, J., Heggenes, J. Røed, K. H. (2011). Population connectivity: Dam migration mitigations and contemporary site fidelity in arctic char. BMC Evol. Biol., 11, 207.10.1186/1471-2148-11-207316100721756324 Search in Google Scholar

Ward, J. V., Stanford, J. A. (1983). The serial discontinuity concept of lotic ecosystems. In: Fontaine, T. D., Bartell, S. M. (eds.). Dynamics of Lotic Ecosystems. Ann Arbor Science, pp. 29–42. Search in Google Scholar

Wirth, T., Saint-Laurent, R., Bernatchez, L. (1999). Isolation and characterization of microsatellite loci in the walleye (Stizostedion vitreum), and cross-species amplification within the family Percidae. Mol. Ecol., 8 (11), 1960–1962.10.1046/j.1365-294x.1999.00778-3.x10620241 Search in Google Scholar

Yeh, F. C., Yang, R. C., Boyle, T. (1999). POPGENE 32-version 1.31. Population Genetics Software. Search in Google Scholar

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