Retrospective Study of Genetic Diversity of Acinetobacter Baumannii-Resistant Strains Isolated from Patients in Rīga East University Hospital in Latvia

Adams, M. D., Chan, E. R., Molyneaux, N. D., Bonomo, R. A. (2010). Genomewide analysis of divergence of antibiotic resistance determinants in closely related isolates of Acinetobacter baumannii. Antimicrob. Agents Chemother.,54 (9), 3569–3577.10.1128/AAC.00057-10293497120530228Search in Google Scholar

Anonymous (2016a). Carbapenem-resistant Acinetobacter baumannii in healthcare settings. European Centre for Disease Prevention and Control. https://www.ecdc.europa.eu/en/publications-data/rapid-risk-assessment-carbapenem-resistant-acinetobacter-baumannii-healthcare (accessed 12.04.2021).Search in Google Scholar

Anonymous (2016b). Point prevalence survey of healthcare-associated infections and antimicrobial use in European acute care hospitals – protocol version 5.3. European Centre for Disease Prevention and Control, Stockholm. https://www.ecdc.europa.eu/en/publications-data/point-prevalence-survey-healthcare-associated-infections-and-antimicrobial-use-3 (accessed 12.04.2021).Search in Google Scholar

Anonymous (2016c). Surveillance Atlas of Infectious Diseases — Antimicrobial resistance. https://ecdc.europa.eu/en/antimicrobial-resistance/surveil-lance-and-disease-data/data-ecdc (accessed 12.04.2021).Search in Google Scholar

Anonymous (2017). WHO publishes list of bacteria for which new antibiotics are urgently needed.http://www.who.int/news-room/detail/27-02-2017-who-publishes-list-of-bacteria-for-which-new-antibiotics-are-urgently-needed (accessed 12 April 2021).Search in Google Scholar

Bouvet, P. J., Grimont, P. A. (1986). Taxonomy of the genus Acinetobacter with the recognition of Acinetobacter baumannii sp. nov. Acinetobacter haemolyticus sp. nov. Acinetobacter johnsonii sp. nov. and Acinetobacter junii sp. nov. and emended descriptions of Acinetobacter calcoaceticus and Acinetobacter lwofii. Int. J. Syst. Bacteriol.,36 (2), 228–240.10.1099/00207713-36-2-228Search in Google Scholar

Brossard, K. A., Campagnari, A. A. (2012). The Acinetobacter baumannii biofilm-associated protein plays a role in adherence to human epithelial cells. Infect. Immun.,80 (1), 228–233.10.1128/IAI.05913-11325568422083703Search in Google Scholar

Chen, L., Zheng, D., Liu, B., Yang, J., Jin, Q. (2016). VFDB 2016: Hierarchical and refined dataset for big data analysis —10 years on. Nucl. Acids Res.,44, D694–D697.10.1093/nar/gkv1239470287726578559Search in Google Scholar

Diancourt, L., Passet, V., Nemec, A., Dijkshoorn, L., Brisse, S. (2010). The population structure of Acinetobacter baumannii: Expanding multi-resistant clones from an ancestral susceptible genetic pool. PLoS One., 5 (4), e10034.10.1371/journal.pone.0010034285092120383326Search in Google Scholar

Perez, F. Hujer, A. M., Hujer, K. M., Decker, B. K., Rather, P. N., Bonomo, R. A. (2007). Global challenge of multidrug-resistant Acinetobacter baumannii. Antimicrob. Agents Chemother.,51 (10) 3471–3484.10.1128/AAC.01464-06204329217646423Search in Google Scholar

Fishbain, J., Peleg, A. Y. (2010). Treatment of Acinetobacter infections. Clin. Infect. Dis.,51 (1), 79–84.10.1086/65312020504234Search in Google Scholar

Fitzpatrick, M. A., Ozer, E. A, Hauser, A. R. (2016). Utility of whole genome sequencing in characterizing Acinetobacter epidemiology and analyzing hospital outbreaks. J. Clin. Microbiol.,54, 593–612.10.1128/JCM.01818-15476797226699703Search in Google Scholar

Fournier, P. E., Richet, H. (2006). The epidemiology and control of Acinetobacter baumannii in health care facilities. Clin. Infect. Dis.,42 (5), 692–699.10.1086/50020216447117Search in Google Scholar

Gramatniece, A., Silamikelis, I., Zahare, I., Urtans, V., Zahare, I., Dimina, E., Saule, M., Balode, M., Radovica-Spalvina, I., Klovins, J., Fridmanis, D., Dumpis, U. (2019). Control of Acinetobacter baumannii outbreak in the neonatal intensive care unit in Latvia: Whole-genome sequencing powered investigation and closure of the ward. Antimicrob. Resist. Infect. Control,8, 84.10.1186/s13756-019-0537-z653225631143444Search in Google Scholar

Higgins, P. G., Prior, K., Harmsen, D., Seifert, H. (2017). Development and evaluation of a core genome multilocus typing scheme for whole-genome sequence-based typing of Acinetobacter baumannii. PLoS ONE., 12, e0179228.10.1371/journal.pone.0179228546462628594944Search in Google Scholar

Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., Goesmann, A., Haeseler, A. von, Stoye, J., Harmsen, D. (2013). Updating benchtop sequencing performance comparison. Nat. Biotechnol.,31 (4), 294–296.10.1038/nbt.252223563421Search in Google Scholar

Kanafani, Z. A., Souha, S. K. (2021). Acinetobacter infection: Epidemiology, microbiology, pathogenesis, clinical features, and diagnosis. https://www.uptodate.com/contents/acinetobacter-infection-epidemiology-microbiology-pathogenesis-clinical-features-and-diagnosis (accessed 12.04.2021).Search in Google Scholar

Kim, S. J., Kim, Y.-J., Ko, K. S., (2018). Genomic analysis of consecutive Acinetobacterbumanii strains from a single patient. Front Microbiol., 9, 2840.10.3389/fmicb.2018.02840627777530542330Search in Google Scholar

Lee, C.-R., Lee, J. H., Park, M., Park, K. S., Bae I. K., Kim, Y. B, Cha, C. J. C., Jeong, B. C., Lee, S. H. (2017). Biology of Acinetobacter baumannii: Pathogenesis, antibiotic resistance mechanisms, and prospective treatment options. Front. Cell. Infect. Microbiol.,7, 55.10.3389/fcimb.2017.00055534658828348979Search in Google Scholar

Liepiņš, M., Sīmanis, R., Lejnieks, A. (2016). Decreasing prevalence of multidrug-resistant Acinetobacter Baumannii in Rīga East University Hospital. Proc. Latvian Acad. Sci.,70 (4), 232–236.10.1515/prolas-2016-0037Search in Google Scholar

Maragakis, L. L., Perl, T. M. (2008). Acinetobacter baumannii: Epidemiology, antimicrobial resistance, and treatment options. Clin. Infect. Dis.,46 (8), 1254–1263.10.1086/52919818444865Search in Google Scholar

Mazumder, S. A. (2021). Acinetobacter.https://emedicine.medscape.com/article/236891-overview (accessed 8 March 2021).Search in Google Scholar

O’Neill, J. (2016). Tackling drug-resistant infections globally: Final report and recommendations. Review on Antimicrobial Resistance.https://www.biomerieuxconnection.com/wp-content/uploads/2018/04/Tackling-Drug-Resistant-Infections-Globally_-Final-Report-and-Recommendations.pdf (accessed 12.04.2021).Search in Google Scholar

Owens, R. C., Jr., Rice, L. (2006). Hospital-based strategies for combating resistance. Clin. Infect. Dis., 42 (Suppl. 4), S173–S181.10.1086/50066416544268Search in Google Scholar

Park, S. Y., Choo, J. Y., Kwon, S. H, Yu, S. N., Lee, E. J., Kim, T. H., Choo, E. J., Jeon, M. H. (2013). Risk factors for mortality in patients with Acinetobacter baumannii bacteremia. Inf. Chemother.,45 (3), 325–330.10.3947/ic.2013.45.3.325384851124396634Search in Google Scholar

Rice, L. B. (2008). Federal funding for the study of antimicrobial resistance in nosocomial pathogens: No ESKAPE. J. Infect. Dis.,197 (8), 1079–1081.10.1086/53345218419525Search in Google Scholar

Sefid, F., Rasooli, I., Jahangiri, A., Bazmara, H. (2015). Functional exposed amino acids of BauA as potential immunogen against Acinetobacter baumannii. Acta Biotheor.,63 (2),129–149.10.1007/s10441-015-9251-225840681Search in Google Scholar

Xiao, D., Wang, L., Zhang, D., Xiang, D., Liu, Q., Xing, X. (2017). Prognosis of patients with Acinetobacter baumannii infection in the intensive care unit: A retrospective analysis. Exper. Ther. Med.,13 (4), 1630–1633.10.3892/etm.2017.4137537756928413520Search in Google Scholar

Zerbino, D.R., Birney, E. (2008). Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res., 18 (5), 821–829.10.1101/gr.074492.107233680118349386Search in Google Scholar