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The genetic variability of small-ruminant lentiviruses and its impact on tropism, the development of diagnostic tests and vaccines and the effectiveness of control programmes

Monika Olech

Monika Olech

Department of Pathology, National Veterinary Research InstitutePuławy, Poland
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Olech, Monika
  
19 dic 2023
The genetic variability of small-ruminant lentiviruses and its impact on tropism, the development of diagnostic tests and vaccines and the effectiveness of control programmes's Cover Image
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Pubblicato online: 19 dic 2023
Pagine: 479 - 502
Ricevuto: 19 giu 2023
Accettato: 13 nov 2023
DOI: https://doi.org/10.2478/jvetres-2023-0064
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© 2023 Monika Olech, published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Overview of SRLV subtypes

Subtype Country of origin Species Genomic fragments used for classification References
A1 Mexico Goats gag (578 bp) 2
Italy Goats gag (800 bp) 63
Belgium Sheep and goats gag-pol (1.8 kb), pol (1.2 kb) 97
Poland Goats gag (625 bp), env (~400 bp) 125
Brazil Goats pol (239 bp) 68
Iceland Sheep gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) 162
A2 Mexico Sheep gag (578 bp) 2
China Sheep Whole genome 179
Brazil Sheep LTR (460 bp) 30
Turkey Sheep gag (800 bp) 111
Canada Sheep and goats gag (1200 bp) 159
China Sheep whole genome 177
North America Sheep gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) 162
A3 Turkey Sheep gag (800 bp) 111
Italy Sheep gag-pol (800 bp) 15
Switzerland Sheep and goats gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) 162
A2/A3 Czech Republic Sheep and goats gag-pol (800 bp) 14
Spain Sheep gag-pol (800 bp) 52
A4 Switzerland Sheep and goats gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) 162
Germany Sheep gag (~400 bp) 104
A5 Slovenia Sheep gag-pol (1.8 kb), pol (1.2 kb) 80
Turkey Sheep gag (800 bp) 111
Italy Goats gag-pol (800 bp) 15
Poland Goats gag (625 bp) 118
Germany Sheep gag (~400 bp) 102
Switzerland Goats gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) 162
A6 France Sheep and goats RT (~300 bp) 162
A7 Switzerland Goats pol (1. 2 kb) 162
A8 Italy Goats gag (800 bp) 17
A9 Italy Sheep and goats gag-pol (800 bp) 15
Turkey Sheep gag (800 bp) 111
A10 Italy Goats pol (1. 2 bp) 144
A11 Turkey Sheep gag (800 bp) 111
Italy Sheep and goats gag-pol (800 bp) 54
Germany Sheep gag (~400 bp) 102
A12 Poland Sheep and goats gag (625 bp), env (610 bp) 119
A13 Poland Sheep gag (625 bp), env (~400 bp) 125
A14 Slovenia Goats gag-pol (1.8 kb), pol (1.2 kb) 80
A15 Slovenia Sheep gag-pol (1.8 kb), pol (1.2 kb) 80
A16 Poland Goats gag (625 bp), env (~400 bp) 128
Germany Sheep gag (~400 bp) 102
A17 Poland Goats gag (625 bp), env (~400 bp) 128
A18 Poland Sheep gag (625 bp) 128
A19* Italy Goats Full genome, gag-pol (800 bp) 15, 34
A20* Italy Sheep and goats gag-pol (800 bp) 15, 34
A21 Germany Sheep gag (~400 bp) 102
A22 Iran Sheep gag (~400 bp) 102
A23 Italy Sheep and goats gag-pol (800 bp) 15
A24 Italy Sheep gag-pol (800 bp) 15
A25* Poland Sheep gag (625 bp) 119
A26* Poland Sheep gag (625 bp), env (610 bp) 119
A27 Poland Goats gag (625 bp), env (610 bp) 122
B1 Japan Goats gag (~529 bp) 79
Mexico Sheep and goats LTR (300 bp), gag (578 bp) 2, 96
Italy Sheep and goats gag-pol (800 bp) 101
Slovenia Goats gag-pol (1.8 kb), pol (1.2 kb) 80
Canada Goats gag (1200 bp) 159
Belgium Goats gag-pol (1.8 kb), pol (1.2 kb) 97
Philippines Goats partial gag 133
U.S. Sheep and goats gag-pol (1.8 kb), pol (1.2 kb) 162
Brazil Sheep and goats env (~400bp), gag (625 bp) 22
Poland Goats gag (625 bp) 128
France Goats RT (~300 bp) 162
B2 Spain Sheep gag-pol (1.8 kb), pol (1.2 kb) 57
Italy Sheep gag-pol (800 bp) 15
Czech Republic Sheep gag-pol (800 bp) 14
Poland Sheep and goats gag (625 bp) 119
Switzerland Sheep gag-pol (1.8 kb), pol (1.2 kb) 162
France Sheep and goats RT (~300 bp) 162
B3 Italy Sheep and goats gag-pol (800 bp) 15
B4 Canada Goats gag-pol (1.8 kb), pol (1.2 kb) 90
B5 Belgium Goats gag-pol (1.8 kb), pol (1.2 kb) 97
C Norway Sheep and goats pol (710 bp), tat-env (2.1–2.4 kp) 55
D Switzerland Sheep and goats pol (1.2 kb) 162
E1 Italy Goats gag-pol (800 bp) 63
E2 Italy Goats gag-pol (800 bp) 63
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Scienze biologiche, Biologia molecolare, Microbiologia e virologia, Scienze della vita, altro, Medicina, Medicina veterinaria
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