A1 |
Mexico |
Goats |
gag (578 bp) |
2 |
Italy |
Goats |
gag (800 bp) |
63 |
Belgium |
Sheep and goats |
gag-pol (1.8 kb), pol (1.2 kb) |
97 |
Poland |
Goats |
gag (625 bp), env (~400 bp) |
125 |
Brazil |
Goats |
pol (239 bp) |
68 |
Iceland |
Sheep |
gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) |
162 |
A2 |
Mexico |
Sheep |
gag (578 bp) |
2 |
China |
Sheep |
Whole genome |
179 |
Brazil |
Sheep |
LTR (460 bp) |
30 |
Turkey |
Sheep |
gag (800 bp) |
111 |
Canada |
Sheep and goats |
gag (1200 bp) |
159 |
China |
Sheep |
whole genome |
177 |
North America |
Sheep |
gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) |
162 |
A3 |
Turkey |
Sheep |
gag (800 bp) |
111 |
Italy |
Sheep |
gag-pol (800 bp) |
15 |
Switzerland |
Sheep and goats |
gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) |
162 |
A2/A3 |
Czech Republic |
Sheep and goats |
gag-pol (800 bp) |
14 |
Spain |
Sheep |
gag-pol (800 bp) |
52 |
A4 |
Switzerland |
Sheep and goats |
gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) |
162 |
Germany |
Sheep |
gag (~400 bp) |
104 |
A5 |
Slovenia |
Sheep |
gag-pol (1.8 kb), pol (1.2 kb) |
80 |
Turkey |
Sheep |
gag (800 bp) |
111 |
Italy |
Goats |
gag-pol (800 bp) |
15 |
Poland |
Goats |
gag (625 bp) |
118 |
Germany |
Sheep |
gag (~400 bp) |
102 |
Switzerland |
Goats |
gag-pol (1.8 kb), pol (1.2 kb), RT (~300bp) |
162 |
A6 |
France |
Sheep and goats |
RT (~300 bp) |
162 |
A7 |
Switzerland |
Goats |
pol (1. 2 kb) |
162 |
A8 |
Italy |
Goats |
gag (800 bp) |
17 |
A9 |
Italy |
Sheep and goats |
gag-pol (800 bp) |
15 |
Turkey |
Sheep |
gag (800 bp) |
111 |
A10 |
Italy |
Goats |
pol (1. 2 bp) |
144 |
A11 |
Turkey |
Sheep |
gag (800 bp) |
111 |
Italy |
Sheep and goats |
gag-pol (800 bp) |
54 |
Germany |
Sheep |
gag (~400 bp) |
102 |
A12 |
Poland |
Sheep and goats |
gag (625 bp), env (610 bp) |
119 |
A13 |
Poland |
Sheep |
gag (625 bp), env (~400 bp) |
125 |
A14 |
Slovenia |
Goats |
gag-pol (1.8 kb), pol (1.2 kb) |
80 |
A15 |
Slovenia |
Sheep |
gag-pol (1.8 kb), pol (1.2 kb) |
80 |
A16 |
Poland |
Goats |
gag (625 bp), env (~400 bp) |
128 |
Germany |
Sheep |
gag (~400 bp) |
102 |
A17 |
Poland |
Goats |
gag (625 bp), env (~400 bp) |
128 |
A18 |
Poland |
Sheep |
gag (625 bp) |
128 |
A19* |
Italy |
Goats |
Full genome, gag-pol (800 bp) |
15, 34 |
A20* |
Italy |
Sheep and goats |
gag-pol (800 bp) |
15, 34 |
A21 |
Germany |
Sheep |
gag (~400 bp) |
102 |
A22 |
Iran |
Sheep |
gag (~400 bp) |
102 |
A23 |
Italy |
Sheep and goats |
gag-pol (800 bp) |
15 |
A24 |
Italy |
Sheep |
gag-pol (800 bp) |
15 |
A25* |
Poland |
Sheep |
gag (625 bp) |
119 |
A26* |
Poland |
Sheep |
gag (625 bp), env (610 bp) |
119 |
A27 |
Poland |
Goats |
gag (625 bp), env (610 bp) |
122 |
B1 |
Japan |
Goats |
gag (~529 bp) |
79 |
Mexico |
Sheep and goats |
LTR (300 bp), gag (578 bp) |
2, 96 |
Italy |
Sheep and goats |
gag-pol (800 bp) |
101 |
Slovenia |
Goats |
gag-pol (1.8 kb), pol (1.2 kb) |
80 |
Canada |
Goats |
gag (1200 bp) |
159 |
Belgium |
Goats |
gag-pol (1.8 kb), pol (1.2 kb) |
97 |
Philippines |
Goats |
partial gag |
133 |
U.S. |
Sheep and goats |
gag-pol (1.8 kb), pol (1.2 kb) |
162 |
Brazil |
Sheep and goats |
env (~400bp), gag (625 bp) |
22 |
Poland |
Goats |
gag (625 bp) |
128 |
France |
Goats |
RT (~300 bp) |
162 |
B2 |
Spain |
Sheep |
gag-pol (1.8 kb), pol (1.2 kb) |
57 |
Italy |
Sheep |
gag-pol (800 bp) |
15 |
Czech Republic |
Sheep |
gag-pol (800 bp) |
14 |
Poland |
Sheep and goats |
gag (625 bp) |
119 |
Switzerland |
Sheep |
gag-pol (1.8 kb), pol (1.2 kb) |
162 |
France |
Sheep and goats |
RT (~300 bp) |
162 |
B3 |
Italy |
Sheep and goats |
gag-pol (800 bp) |
15 |
B4 |
Canada |
Goats |
gag-pol (1.8 kb), pol (1.2 kb) |
90 |
B5 |
Belgium |
Goats |
gag-pol (1.8 kb), pol (1.2 kb) |
97 |
C |
Norway |
Sheep and goats |
pol (710 bp), tat-env (2.1–2.4 kp) |
55 |
D |
Switzerland |
Sheep and goats |
pol (1.2 kb) |
162 |
E1 |
Italy |
Goats |
gag-pol (800 bp) |
63 |
E2 |
Italy |
Goats |
gag-pol (800 bp) |
63 |