Progress and Knowledge Transfer from Science to Technology in the Research Frontier of CRISPR Based on the LDA Model

Arun, R., Suresh, V., Madhavan, C.E.V., & Murty, M.N. (2010). On Finding the Natural Number of Topics with Latent Dirichlet Allocation: Some Observations. In M.J. Zaki, J.X. Yu, B. Ravindran, & V. Pudi (Eds.), Advances in Knowledge Discovery and Data Mining, Pt I, Proceedings (Vol. 6118, pp. 391–402). Berlin: Springer-Verlag Berlin. ArunR. SureshV. MadhavanC.E.V. MurtyM.N. 2010 On Finding the Natural Number of Topics with Latent Dirichlet Allocation: Some Observations In ZakiM.J. YuJ.X. RavindranB. PudiV. (Eds.), Advances in Knowledge Discovery and Data Mining, Pt I, Proceedings 6118 391 402 Berlin Springer-Verlag Berlin 10.1007/978-3-642-13657-3_43 Search in Google Scholar

Baltimore, D., Berg, P., Botchan, M., Carroll, D., Charo, R.A., Church, G., … Yamamoto, K.R. (2015). A prudent path forward for genomic engineering and germline gene modification. Science, 348(6230), 36–38. doi:10.1126/science.aab1028 BaltimoreD. BergP. BotchanM. CarrollD. CharoR.A. ChurchG. YamamotoK.R. 2015 A prudent path forward for genomic engineering and germline gene modification Science 348 6230 36 38 10.1126/science.aab1028 439418325791083 Open DOISearch in Google Scholar

Blei, D.M., Ng, A.Y., & Jordan, M.I. (2003). Latent dirichlet allocation. Journal of Machine Learning Research, 3(4/5), 993–1022 BleiD.M. NgA.Y. JordanM.I. 2003 Latent dirichlet allocation Journal of Machine Learning Research 3 4/5 993 1022 Search in Google Scholar

Blei, D.M. (2012). Probabilistic topic models. Communications of the Acm, 55(4), 77–84. doi:10.1145/2133806.2133826 BleiD.M. 2012 Probabilistic topic models Communications of the Acm 55 4 77 84 10.1145/2133806.2133826 Open DOISearch in Google Scholar

Blei, D.M., & Lafferty, J.D. (2006). Dynamic topic models. In Proceedings of the 23rd international conference on Machine learning (pp. 113–120). BleiD.M. LaffertyJ.D. 2006 Dynamic topic models In Proceedings of the 23rd international conference on Machine learning 113 120 10.1145/1143844.1143859 Search in Google Scholar

Blei, D.M., & Lafferty, J.D. (2007). A correlated topic model of science. Annals of Applied Statistics, 1(1), 17–35. doi:10.1214/07-aoas114 BleiD.M. LaffertyJ.D. 2007 A correlated topic model of science Annals of Applied Statistics 1 1 17 35 10.1214/07-aoas114 Open DOISearch in Google Scholar

Campbell, A., Cavalade, C., Haunold, C., Karanikic, P., & Piccaluga, A. (2020). Knowledge Transfer Metrics. Towards a European-wide set of harmonised indicators. EUR, 30218 CampbellA. CavaladeC. HaunoldC. KaranikicP. PiccalugaA. 2020 Knowledge Transfer Metrics. Towards a European-wide set of harmonised indicators. EUR, 30218 Search in Google Scholar

Doudna, J.A. (2020). The promise and challenge of therapeutic genome editing. Nature, 578(7794), 229–236. doi:10.1038/s41586-020-1978-5 DoudnaJ.A. 2020 The promise and challenge of therapeutic genome editing Nature 578 7794 229 236 10.1038/s41586-020-1978-5 899261332051598 Open DOISearch in Google Scholar

Doudna, J.A., & Charpentier, E. (2014). The new frontier of genome engineering with CRISPR-Cas9. Science, 346(6213), 1077–+. doi:10.1126/science.1258096 DoudnaJ.A. CharpentierE. 2014 The new frontier of genome engineering with CRISPR-Cas9 Science 346 6213 1077 10.1126/science.1258096 25430774 Open DOISearch in Google Scholar

Doudna, J.A., & Gersbach, C.A. (2015). Genome editing: The end of the beginning. Genome Biology, 16. doi:10.1186/s13059-015-0860-5 DoudnaJ.A. GersbachC.A. 2015 Genome editing: The end of the beginning Genome Biology 16 10.1186/s13059-015-0860-5 469935626700220 Open DOISearch in Google Scholar

Figuerola, C.G., Marco, F.J.G., & Pinto, M. (2017). Mapping the evolution of library and information science (1978–2014) using topic modeling on LISA. Scientometrics, 112(3), 1507–1535. doi:10.1007/s11192-017-2432-9 FiguerolaC.G. MarcoF.J.G. PintoM. 2017 Mapping the evolution of library and information science (1978–2014) using topic modeling on LISA Scientometrics 112 3 1507 1535 10.1007/s11192-017-2432-9 Open DOISearch in Google Scholar

Fukuzawa, N., & Ida, T. (2016). Science linkages between scientific articles and patents for leading scientists in the life and medical sciences field: The case of Japan. Scientometrics, 106(2), 629–644. doi:10.1007/s11192-015-1795-z FukuzawaN. IdaT. 2016 Science linkages between scientific articles and patents for leading scientists in the life and medical sciences field: The case of Japan Scientometrics 106 2 629 644 10.1007/s11192-015-1795-z Open DOISearch in Google Scholar

Gittelman, M., & Kogut, B. (2003). Does good science lead to valuable knowledge? Biotechnology firms and the evolutionary logic of citation patterns. Management Science, 49(4), 366–382. doi:10.1287/mnsc.49.4.366.14420 GittelmanM. KogutB. 2003 Does good science lead to valuable knowledge? Biotechnology firms and the evolutionary logic of citation patterns Management Science 49 4 366 382 10.1287/mnsc.49.4.366.14420 Open DOISearch in Google Scholar

Griffiths, T.L., & Steyvers, M. (2004). Finding scientific topics. In Proceedings of the National Academy of Sciences of the United States of America, 101, 5228–5235. doi:10.1073/pnas.0307752101 GriffithsT.L. SteyversM. 2004 Finding scientific topics In Proceedings of the National Academy of Sciences of the United States of America 101 5228 5235 10.1073/pnas.0307752101 38730014872004 Open DOISearch in Google Scholar

Gupta, P., & Gulati, P. (2021). Implementation and comparison of topic modeling techniques based on user reviews in e-commerce recommendations. Journal of Ambient Intelligence and Humanized Computing, 12(5), 5055–5070. doi:10.1007/s12652-020-01956-6 GuptaP. GulatiP. 2021 Implementation and comparison of topic modeling techniques based on user reviews in e-commerce recommendations Journal of Ambient Intelligence and Humanized Computing 12 5 5055 5070 10.1007/s12652-020-01956-6 Open DOISearch in Google Scholar

Gurwitz, D. (2014). Gene drives raise dual-use concerns. Science, 345(6200), 1010–1010. doi:10.1126/science.345.6200.1010-b GurwitzD. 2014 Gene drives raise dual-use concerns Science 345 6200 1010 1010 10.1126/science.345.6200.1010-b 25170142 Open DOISearch in Google Scholar

Han, X.Y. (2020). Evolution of research topics in LIS between 1996 and 2019: An analysis based on latent Dirichlet Allocation topic model. Scientometrics, 125(3), 2561–2595. doi:10.1007/s11192-020-03721-0 HanX.Y. 2020 Evolution of research topics in LIS between 1996 and 2019: An analysis based on latent Dirichlet Allocation topic model Scientometrics 125 3 2561 2595 10.1007/s11192-020-03721-0 Open DOISearch in Google Scholar

Hsu, P.D., Lander, E.S., & Zhang, F. (2014). Development and applications of CRISPR-Cas9 for genome engineering. Cell, 157(6), 1262–1278. doi:10.1016/j.cell.2014.05.010 HsuP.D. LanderE.S. ZhangF. 2014 Development and applications of CRISPR-Cas9 for genome engineering Cell 157 6 1262 1278 10.1016/j.cell.2014.05.010 434319824906146 Open DOISearch in Google Scholar

Hoffman, M., Bach, F., & Blei, D. (2010). Online learning for latent dirichlet allocation. Advances in Neural Information Processing Systems, 23, 856–864. HoffmanM. BachF. BleiD. 2010 Online learning for latent dirichlet allocation Advances in Neural Information Processing Systems 23 856 864 Search in Google Scholar

Hu, X., & Rousseau, R. (2018). A new approach to explore the knowledge transition path in the evolution of science & technology: From the biology of restriction enzymes to their application in biotechnology. Journal of Informetrics, 12(3), 842–857. doi:10.1016/j.joi.2018.07.004 HuX. RousseauR. 2018 A new approach to explore the knowledge transition path in the evolution of science & technology: From the biology of restriction enzymes to their application in biotechnology Journal of Informetrics 12 3 842 857 10.1016/j.joi.2018.07.004 Open DOISearch in Google Scholar

Jiang, T., Liu, X.P., Zhang, C., Yin, C.A.H., & Liu, H.Z. (2021). Overview of trends in global single cell research based on bibliometric analysis and LDA model (2009–2019). Journal of Data and Information Science, 6(2), 163–178. doi:10.2478/jdis-2021-0008 JiangT. LiuX.P. ZhangC. YinC.A.H. LiuH.Z. 2021 Overview of trends in global single cell research based on bibliometric analysis and LDA model (2009–2019) Journal of Data and Information Science 6 2 163 178 10.2478/jdis-2021-0008 Open DOISearch in Google Scholar

Kim, H., & Kim, J.S. (2014). A guide to genome engineering with programmable nucleases. Nature Reviews Genetics, 15(5), 321–334. doi:10.1038/nrg3686 KimH. KimJ.S. 2014 A guide to genome engineering with programmable nucleases Nature Reviews Genetics 15 5 321 334 10.1038/nrg3686 24690881 Open DOISearch in Google Scholar

Knott, G.J., & Doudna, J.A. (2018). CRISPR-Cas guides the future of genetic engineering. Science, 361(6405), 866–869. doi:10.1126/science.aat5011 KnottG.J. DoudnaJ.A. 2018 CRISPR-Cas guides the future of genetic engineering Science 361 6405 866 869 10.1126/science.aat5011 645591330166482 Open DOISearch in Google Scholar

Kushkowski, J.D., Shrader, C.B., Anderson, M.H., & White, R.E. (2020). Information flows and topic modeling in corporate governance. Journal of Documentation, 76(6), 1313–1339. doi:10.1108/jd-10-2019-0207 KushkowskiJ.D. ShraderC.B. AndersonM.H. WhiteR.E. 2020 Information flows and topic modeling in corporate governance Journal of Documentation 76 6 1313 1339 10.1108/jd-10-2019-0207 Open DOISearch in Google Scholar

Lamba, M., & Madhusudhan, M. (2019). Mapping of topics in DESIDOC Journal of Library and Information Technology, India: A study. Scientometrics, 120(2), 477–505. doi:10.1007/s11192-019-03137-5 LambaM. MadhusudhanM. 2019 Mapping of topics in DESIDOC Journal of Library and Information Technology, India: A study Scientometrics 120 2 477 505 10.1007/s11192-019-03137-5 Open DOISearch in Google Scholar

Ledford, H. (2015). CRISPR, the disruptor. Nature, 522(7554), 20–24. doi:10.1038/522020a LedfordH. 2015 CRISPR, the disruptor Nature 522 7554 20 24 10.1038/522020a Open DOISearch in Google Scholar

Li, D., Azoulay, P., & Sampat, B.N. (2017). The applied value of public investments in biomedical research. Science, 356(6333), 78–81. doi:10.1126/science.aal0010 LiD. AzoulayP. SampatB.N. 2017 The applied value of public investments in biomedical research Science 356 6333 78 81 10.1126/science.aal0010 Open DOISearch in Google Scholar

Lo, S.C.S. (2010). Scientific linkage of science research and technology development: A case of genetic engineering research. Scientometrics, 82(1), 109–120. doi:10.1007/s11192-009-0036-8 LoS.C.S. 2010 Scientific linkage of science research and technology development: A case of genetic engineering research Scientometrics 82 1 109 120 10.1007/s11192-009-0036-8 Open DOISearch in Google Scholar

McMillan, G.S., Narin, F., & Deeds, D.L. (2000). An analysis of the critical role of public science in innovation: The case of biotechnology. Research Policy, 29(1), 1–8. doi:10.1016/s0048-7333(99)00030-x McMillanG.S. NarinF. DeedsD.L. 2000 An analysis of the critical role of public science in innovation: The case of biotechnology Research Policy 29 1 1 8 10.1016/s0048-7333(99)00030-x Open DOISearch in Google Scholar

Mendes, F.M.L., Castor, K., Monteiro, R., Mota, F.B., & Rocha, L.F.M. (2019). Mapping the lab-on-a-chip patent landscape through bibliometric techniques. World Patent Information, 58. doi:10.1016/j.wpi.2019.101904 MendesF.M.L. CastorK. MonteiroR. MotaF.B. RochaL.F.M. 2019 Mapping the lab-on-a-chip patent landscape through bibliometric techniques World Patent Information 58 10.1016/j.wpi.2019.101904 Open DOISearch in Google Scholar

Miyata, Y., Ishita, E., Yang, F., Yamamoto, M., Iwase, A., & Kurata, K. (2020). Knowledge structure transition in library and information science: Topic modeling and visualization. Scientometrics, 125(1), 665–687. doi:10.1007/s11192-020-03657-5 MiyataY. IshitaE. YangF. YamamotoM. IwaseA. KurataK. 2020 Knowledge structure transition in library and information science: Topic modeling and visualization Scientometrics 125 1 665 687 10.1007/s11192-020-03657-5 Open DOISearch in Google Scholar

Newman, D.J., & Block, S. (2006). Probabilistic topic decomposition of an eighteenth-century American newspaper. Journal of the American Society for Information Science and Technology, 57(6), 753–767. doi:10.1002/asi.20342 NewmanD.J. BlockS. 2006 Probabilistic topic decomposition of an eighteenth-century American newspaper Journal of the American Society for Information Science and Technology 57 6 753 767 10.1002/asi.20342 Open DOISearch in Google Scholar

Pickar-Oliver, A., & Gersbach, C.A. (2019). The next generation of CRISPR-Cas technologies and applications. Nature Reviews Molecular Cell Biology, 20(8), 490–507. doi:10.1038/s41580-019-0131-5 Pickar-OliverA. GersbachC.A. 2019 The next generation of CRISPR-Cas technologies and applications Nature Reviews Molecular Cell Biology 20 8 490 507 10.1038/s41580-019-0131-5 707920731147612 Open DOISearch in Google Scholar

Qin, J.H., Wang, J.J., & Ye, F.Y. (2019). A metric approach to hot topics in biomedicine via keyword co-occurrence. Journal of Data and Information Science, 4(4), 13–25. doi:10.2478/jdis-2019-0018 QinJ.H. WangJ.J. YeF.Y. 2019 A metric approach to hot topics in biomedicine via keyword co-occurrence Journal of Data and Information Science 4 4 13 25 10.2478/jdis-2019-0018 Open DOISearch in Google Scholar

Roder, M., Both, A., Hinneburg, A., & Assoc Comp, M. (2015). Exploring the space of topic coherence measures. New York: Assoc Computing Machinery. RoderM. BothA. HinneburgA. Assoc CompM. 2015 Exploring the space of topic coherence measures New York Assoc Computing Machinery 10.1145/2684822.2685324 Search in Google Scholar

Shan B. & Li F. (2010). A survey of topic evolution based on LDA (in Chinese). Journal of Chinese Information Processing, 24(06), 43–49+68 ShanB. LiF. 2010 A survey of topic evolution based on LDA (in Chinese) Journal of Chinese Information Processing 24 06 43 49+68 Search in Google Scholar

Sievert, C., & Shirley, K. (2014). LDAvis: A method for visualizing and interpreting topics. In Proceedings of the workshop on interactive language learning, visualization, and interfaces (pp. 63–70). SievertC. ShirleyK. 2014 LDAvis: A method for visualizing and interpreting topics In Proceedings of the workshop on interactive language learning, visualization, and interfaces 63 70 10.3115/v1/W14-3110 Search in Google Scholar

Sugimoto, C.R., Li, D.F., Russell, T.G., Finlay, S.C., & Ding, Y. (2011). The shifting sands of disciplinary development: Analyzing north american library and information science dissertations using Latent Dirichlet Allocation. Journal of the American Society for Information Science and Technology, 62(1), 185–204. doi:10.1002/asi.21435 SugimotoC.R. LiD.F. RussellT.G. FinlayS.C. DingY. 2011 The shifting sands of disciplinary development: Analyzing north american library and information science dissertations using Latent Dirichlet Allocation Journal of the American Society for Information Science and Technology 62 1 185 204 10.1002/asi.21435 Open DOISearch in Google Scholar

Suominen, A., & Toivanen, H. (2016). Map of science with topic modeling: Comparison of unsupervised learning and human-assigned subject classification. Journal of the Association for Information Science and Technology, 67(10), 2464–2476. doi:10.1002/asi.23596 SuominenA. ToivanenH. 2016 Map of science with topic modeling: Comparison of unsupervised learning and human-assigned subject classification Journal of the Association for Information Science and Technology 67 10 2464 2476 10.1002/asi.23596 Open DOISearch in Google Scholar

Tijssen, R.J.W. (2010). Discarding the ‘basic science/applied science’ dichotomy: A knowledge utilization triangle classification system of research journals. Journal of the American Society for Information Science and Technology, 61(9), 1842–1852. doi:10.1002/asi.21366 TijssenR.J.W. 2010 Discarding the ‘basic science/applied science’ dichotomy: A knowledge utilization triangle classification system of research journals Journal of the American Society for Information Science and Technology 61 9 1842 1852 10.1002/asi.21366 Open DOISearch in Google Scholar

Tijssen, R.J.W., Buter, R.K., & van Leeuwen, T.N. (2000). Technological relevance of science: An assessment of citation linkages between patents and research papers. Scientometrics, 47(2), 389–412. Retrieved from <Go to ISI>://WOS:000089449100014 TijssenR.J.W. ButerR.K. van LeeuwenT.N. 2000 Technological relevance of science: An assessment of citation linkages between patents and research papers Scientometrics 47 2 389 412 Retrieved from <Go to ISI>://WOS:000089449100014 10.1023/A:1005603513439 Search in Google Scholar

Wang, J.J., & Ye, F.Y. (2021). Probing into the interactions between papers and patents of new CRISPR/CAS9 technology: A citation comparison. Journal of Informetrics, 15(4), 12. doi:10.1016/j.joi.2021.101189 WangJ.J. YeF.Y. 2021 Probing into the interactions between papers and patents of new CRISPR/CAS9 technology: A citation comparison Journal of Informetrics 15 4 12 10.1016/j.joi.2021.101189 Open DOISearch in Google Scholar

Wang, X., & McCallum, A. (2006). Topics over time: A non-markov continuous-time model of topical trends. In Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining (pp. 424–433). WangX. McCallumA. 2006 Topics over time: A non-markov continuous-time model of topical trends In Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining 424 433 10.1145/1150402.1150450 Search in Google Scholar

WIPO. (2019). International patent classification (version 2019). Available at http://www.wipo.int/classifications/ipc WIPO 2019 International patent classification (version 2019) Available at http://www.wipo.int/classifications/ipc Search in Google Scholar

van Raan, A.F.J. (2017a). Patent citations analysis and its value in research evaluation: A review and a new approach to map technology-relevant research. Journal of Data and Information Science, 2(1), 13–50. doi:10.1515/jdis-2017-0002 van RaanA.F.J. 2017a Patent citations analysis and its value in research evaluation: A review and a new approach to map technology-relevant research Journal of Data and Information Science 2 1 13 50 10.1515/jdis-2017-0002 Open DOISearch in Google Scholar

van Raan, A.F.J. (2017b). Sleeping beauties cited in patents: Is there also a dormitory of inventions? Scientometrics, 110(3), 1123–1156. doi:10.1007/s11192-016-2215-8 van RaanA.F.J. 2017b Sleeping beauties cited in patents: Is there also a dormitory of inventions? Scientometrics 110 3 1123 1156 10.1007/s11192-016-2215-8 531108728255185 Open DOISearch in Google Scholar

Yau, C.K., Porter, A., Newman, N., & Suominen, A. (2014). Clustering scientific documents with topic modeling. Scientometrics, 100(3), 767–786. doi:10.1007/s11192-014-1321-8 YauC.K. PorterA. NewmanN. SuominenA. 2014 Clustering scientific documents with topic modeling Scientometrics 100 3 767 786 10.1007/s11192-014-1321-8 Open DOISearch in Google Scholar

Zhou, H.C., Zheng, D.J., Li, Y.M., & Shen, J.W. (2019). User-opinion mining for mobile library apps in China: Exploring user improvement needs. Library Hi Tech, 37(3), 325–337. doi:10.1108/lht-05-2018-0066 ZhouH.C. ZhengD.J. LiY.M. ShenJ.W. 2019 User-opinion mining for mobile library apps in China: Exploring user improvement needs Library Hi Tech 37 3 325 337 10.1108/lht-05-2018-0066 Open DOISearch in Google Scholar

Zhou, W.Y., Yuan, Y.J., Zhang, Y.Q., & Chen, D. (2021). A decade of CRISPR gene editing in China and beyond: A scientometric landscape. Crispr Journal, 4(3), 313–320. doi:10.1089/crispr.2020.0148 ZhouW.Y. YuanY.J. ZhangY.Q. ChenD. 2021 A decade of CRISPR gene editing in China and beyond: A scientometric landscape Crispr Journal 4 3 313 320 10.1089/crispr.2020.0148 34152220 Open DOISearch in Google Scholar

Zhu, H.C., Li, C., & Gao, C.X. (2020). Applications of CRISPR-Cas in agriculture and plant biotechnology. Nature Reviews Molecular Cell Biology, 21(11), 661–677. doi:10.1038/s41580-020-00288-9 ZhuH.C. LiC. GaoC.X. 2020 Applications of CRISPR-Cas in agriculture and plant biotechnology Nature Reviews Molecular Cell Biology 21 11 661 677 10.1038/s41580-020-00288-9 32973356 Open DOISearch in Google Scholar