Primers | Direction | Sequence (5'-3') | Loci | PCR | Sequencing | Reference |
---|---|---|---|---|---|---|
18S-CL-F3 | F | CTTGTCTCAAAGATTAAGCCATGCAT | 18S | √ | √ | This study |
1912R | R | TTTACGGTCAGAACTAGGG | 18S | √ | √ |
|
18S-530R | R | GCGGCTGCTGGCACCACACTT | 18S | √ |
|
|
530F | F | AAGTCTGGTGCCAGCAGCCGC | 18S | √ |
|
|
D2A | F | ACAAGTACCGTGAGGGAAAGTTG | 28S | √ | √ | Nunn (1992) |
D3B | R | TCGGAAGGAACCAGCTACTA | 28S | √ | √ | Nunn (1992) |
D3A | F | GACCCGTCTTGAAACACGGA | 28S | √ | Nunn (1992) | |
ITS-CL-F2 | F | ATTACGTCCCTGCCCTTTGTA | ITS | √ | √ | This study |
VRAIN 2R | R | TTTCACTCGCCGTTACTAAGGGAATC | ITS | √ | √ |
|
rDNA1.58S | R | ACGAGCCGAGTGATCCACCG | ITS | √ |
|
|
COI-CL-F8 | F | AGAGAGTTCTAATCATAAAGATATTGG | COI | √ | √ | This study |
COI-R2 | R | GTAGCAGCAGTAAAATAAGCACG | COI | √ | √ |
|
COI-F2 | F | CCTGTCTTGGCTGGTGCTATTAC | COI | √ |
|
Taxon | Isolate/Strain | Accession | Length (bp) | Locality |
---|---|---|---|---|
|
137 | AY508074 | 724 | Austria |
|
104F25F3 | MA, USA | ||
|
AM279710 | Portugal | ||
|
HLi104111UGMD | EU107359 | 741 | Taiwan |
|
154 | AY508083 | 724 | Greece |
|
155 | AY508084 | 725 | Germany |
|
Ne-2-98 | KT806477 | 782 | China |
|
BnFFPRI | AB849479 | 708 | Japan |
|
JH2015 | KT223042 | 786 | Belgium |
|
BrBRA | KF978102 | 785 | Brazil |
|
AB368530 | 1,241 | Alaska, USA |
Taxon | Isolate/Strain | Accession | Length (bp) | Locality |
---|---|---|---|---|
|
104F33 | 978 | MA, USA | |
|
137 | AY508011 | 1,706 | Austria |
|
– | AM279709 | 1,650 | Portugal |
|
138 | AY508012 | 1,698 | Germany |
|
– | KT599480 | 1,748 | Taiwan |
|
PL-21 | KU683736 | 1,676 | Poland |
|
169 | AY508024 | 1,653 | Trinidad & Tobago |
|
154 | AY508017 | 1,706 | Greece |
|
160 | AY508019 | 1,709 | China |
|
NK203 | AB849465 | 1,564 | Japan |
|
JH-2015 | KT223041 | 1,748 | Belgium |
|
38717 | GQ421483 | 1,642 | Hong Kong, China |
|
Zhoushan | KT878515 | 1,648 | China |
|
Ne27/04 | AM397017 | 1,687 | Brazil |
|
– | AM397017 | 1,699 | Alaska, USA |
|
– | LC027461 | 1,699 | Ishigaki Is., JP |
|
– | AB232162 | 2,525 | Japan |