Detecting differential viability selection between environments by analysis of compositional differentiation at different levels of genetic integration

Antao T, A Lopes, RJ Lopes, A Beja-Pereira and G Luikart (2008) LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method. BMC Bioinformatics 9:323. https://dx.doi.org/10.1186/1471-2105-9-32310.1186/1471-2105-9-323Open DOISearch in Google Scholar

Beaumont MA and RA Nichols (1996) Evaluating loci for use in the genetic analysis of population structure. Proceedings of the Royal Society B: Biological Sciences 263(1377)1619-1626. https://dx.doi.org/10.1098/rspb.1996.023710.1098/rspb.1996.0237Open DOISearch in Google Scholar

Flanagan SP and AG Jones (2015) Identifying signatures of sexual selection using genomewide selection components analysis. Ecology and Evolution 5(13):2722-2744. https://dx.doi.org/10.1002/ece3.154610.1002/ece3.1546Open DOISearch in Google Scholar

Foll M and O Gaggiotti (2008) A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180(2):977-993.10.1534/genetics.108.092221Search in Google Scholar

Gillet EM (2013) DifferInt : compositional differentiation among populations at three levels of genetic integration. Molecular Ecology Resources 13(5):953-964. https://dx.doi.org/10.1111/1755-0998.1214510.1111/1755-0998.12145Open DOISearch in Google Scholar

Gillet EM and H-R Gregorius (2008) Measuring differentiation among populations at different levels of genetic integration. BMC Genetics 9:60.10.1186/1471-2156-9-60Open DOISearch in Google Scholar

Gillet EM, H-R Gregorius and M Ziehe (2004) May inclusion of trait differences in genetic cluster analysis alter our views? Forest Ecology and Management 197(1-3):149-158.10.1016/j.foreco.2004.05.010Search in Google Scholar

Gregorius H-R (1974) On the concept of genetic distance between populations based on gene frequencies. In: Department of Forest Genetics, Royal College of Forestry, Stockholm (ed) Proceedings of the IRUFRO Joint Meeting of Working Parties on Population and Ecological Genetics, Breeding Theory and Progeny Testing, S.02-04. Stockholm, pp 17-22. http://www.uni-goettingen.de/de/document/download/9afb2d3c2d8aee7036cc05d475cd5a64.pdf/017-Gregorius-IUFRO-1974.pdfSearch in Google Scholar

Gregorius H-R (1984) A unique genetic distance. Biometrical Journal 26(1):13-18. https://dx.doi.org/10.1002/bimj.471026010310.1002/bimj.4710260103Open DOISearch in Google Scholar

Gregorius H-R (2011) The analysis of association between traits when differences between trait states matter. Acta Biotheoretica 59(3-4):213-229. https://dx.doi.org/10.1007/s10441-011-9138-910.1007/s10441-011-9138-9Open DOISearch in Google Scholar

Gregorius H-R (1991) On the concept of effective number. Theoretical Population Biology 40(2):269-283.10.1016/0040-5809(91)90056-LOpen DOISearch in Google Scholar

Gregorius H-R, B Degen and A König (2007) Problems in the analysis of genetic differentiation among populations – a case study in Quercus robur. Silvae Genetica 56(3-4):190-199. https://www.thuenen.de/media/institute/fg/PDF/Silvae_Genetica/2007/Vol._56_Heft_3-4/56_3-4_190.pdf10.1515/sg-2007-0029Search in Google Scholar

Gregorius H-R, EM Gillet and M Ziehe (2003) Measuring differences of trait distributions between populations. Biometrical Journal 45(8):959-973. https://dx.doi.org/10.1002/bimj.20039006310.1002/bimj.200390063Search in Google Scholar

Gregorius H-R and JH Roberds (1986) Measurement of genetical differentiation among subpopulations. Theoretical and Applied Genetics 71(6):826-834. https://dx.doi.org/10.1007/BF0027642510.1007/BF0027642524247710Open DOISearch in Google Scholar

Hedrick PW (2005) A standardized genetic differentiation measure. Evolution 59(8):1633-1638. https://dx.doi.org/10.1111/j.0014-3820.2005.tb01814.x10.1111/j.0014-3820.2005.tb01814.xSearch in Google Scholar

Hufford KM and JLH Hamrick (2003) Viability selection at three early life stages of the tropical tree Platypodium elegans (Fabaceae, Papilionoideae). Evolution 57(3):518-526. https://dx.doi.org/10.1111/j.0014-3820.2003.tb01543.x10.1111/j.0014-3820.2003.tb01543.x12703941Open DOISearch in Google Scholar

Jost L (2008) G_ST and its relatives do not measure differentiation. Molecular Ecology 17(18):4015-4026. https://dx.doi.org/10.1111/j.1365-294X.2008.03887.x10.1111/j.1365-294X.2008.03887.x19238703Open DOISearch in Google Scholar

Lotterhos KE and MC Whitlock (2014) Evaluation of demographic history and neutral parameterization on the performance of F_ST outlier tests. Molecular Ecology 23(9):2178-2192. https://dx.doi.org/10.1111/mec.1272510.1111/mec.12725422876324655127Open DOISearch in Google Scholar

Müller-Starck G (1993) Auswirkungen von Umweltbelastungen auf genetische Strukturen von Waldbeständen am Beispiel der Buche (Fagus sylvatica L.). Schriften aus der Forstlichen Fakultät der Universität Göttingen und der Niedersächsischen Forstlichen Versuchsanstalt, Bd. 112. Frankfurt am Main, Germany: J.D. Sauerländer’s Verlag, 163 p.Search in Google Scholar

Nei M (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences U.S.A. 70(12):3321-3323. http://www.pnas.org/content/70/12/3321.abstract10.1073/pnas.70.12.33214272284519626Search in Google Scholar

Nosil P, DJ Funk and D Ortiz-Barrientos (2009) Divergent selection and heterogeneous genomic divergence. Molecular Ecology 18(3):375-402. https://dx.doi.org/10.1111/j.1365-294X.2008.03946.x10.1111/j.1365-294X.2008.03946.x19143936Open DOISearch in Google Scholar

Simpson EH (1949) Measurement of diversity. Nature 163(30 April 1949):688. https://dx.doi.org/10.1038/163688a010.1038/163688a0Open DOISearch in Google Scholar

Wright S (1978) Evolution and the Genetics of Populations, Vol. 4: Variability Within and Among Natural Populations. Chicago, The University of Chicago Press, 590 p, ISBN 9780226910529Search in Google Scholar