Identification of differentially expressed genes associated with the enhancement of X-ray susceptibility by RITA in a hypopharyngeal squamous cell carcinoma cell line (FaDu)
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Torre LA, Bray F, Siegel RL, Ferlay J, Lortet-Tieulent J, Jemal A. Global cancer statistics, 2012. CA Cancer J Clin 2015; 65: 87-108.TorreLABrayFSiegelRLFerlayJLortet-TieulentJJemalAGlobal cancer statistics, 2012.CA Cancer J Clin2015658710810.3322/caac.21262Search in Google Scholar
Chaturvedi AK, Engels EA, Pfeiffer RM, Hernandez BY, Xiao W, Kim E, et al. Human papillomavirus and rising oropharyngeal cancer incidence in the United States. J Clin Oncol 2011; 29: 4294-301.ChaturvediAKEngelsEAPfeifferRMHernandezBYXiaoWKimEHuman papillomavirus and rising oropharyngeal cancer incidence in the United StatesJ Clin Oncol201129429430110.1200/JCO.2011.36.4596Search in Google Scholar
Van Monsjou HS, Balm AJ, Van den Brekel MM, Wreesmann VB. Oropharyngeal squamous cell carcinoma: a unique disease on the rise? Oral Oncol 2010; 46: 780-5.Van MonsjouHSBalmAJVan den BrekelMMWreesmannVBOropharyngeal squamous cell carcinoma: a unique disease on the rise?Oral Oncol201046780510.1016/j.oraloncology.2010.08.011Search in Google Scholar
Garden AS, Asper JA, Morrison WH, Schechter NR, Glisson BS, Kies MS, et al. Is concurrent chemoradiation the treatment of choice for all patients with Stage III or IV head and neck carcinoma? Cancer 2004; 100: 1171-8.GardenASAsperJAMorrisonWHSchechterNRGlissonBSKiesMSIs concurrent chemoradiation the treatment of choice for all patients with Stage III or IV head and neck carcinoma?Cancer20041001171810.1002/cncr.20069Search in Google Scholar
Kramer S, Gelber RD, Snow JB, Marcial VA, Lowry LD, Davis LW, et al. Combined radiation therapy and surgery in the management of advanced head and neck cancer: final report of study 73–03 of the Radiation Therapy Oncology Group. Head Neck Surg 1987; 10: 19-30.KramerSGelberRDSnowJBMarcialVALowryLDDavisLWCombined radiation therapy and surgery in the management of advanced head and neck cancer: final report of study 73-3 of the Radiation Therapy Oncology Group.Head Neck Surg198710193010.1002/hed.2890100105Search in Google Scholar
Kato K, Muro K, Minashi K, Ohtsu A, Ishikura S, Boku N, et al. Phase II study of chemoradiotherapy with 5-fluorouracil and cisplatin for stage II–III esophageal squamous cell carcinoma: JCOG Trial (JCOG 9906). Int J Radiat Oncol Biol Phys 2011; 81: 684-90.KatoKMuroKMinashiKOhtsuAIshikuraSBokuNPhase II study of chemoradiotherapy with 5-fluorouracil and cisplatin for stage II-III esophageal squamous cell carcinoma: JCOG Trial (JCOG 9906).Int J Radiat Oncol Biol Phys2011816849010.1016/j.ijrobp.2010.06.033Search in Google Scholar
Kruser TJ, Armstrong EA, Ghia AJ, Huang S, Wheeler DL, Radinsky R, et al. Augmentation of radiation response by panitumumab in models of upper aerodigestive tract cancer. Int J Radiat Oncol Biol Phys 2008; 72: 534-42.KruserTJArmstrongEAGhiaAJHuangSWheelerDLRadinskyRAugmentation of radiation response by panitumumab in models of upper aerodigestive tract cancer.Int J Radiat Oncol Biol Phys2008725344210.1016/j.ijrobp.2008.06.1490Search in Google Scholar
Roh J-L, Ko JH, Moon SJ, Ryu CH, Choi JY, Koch WM. The p53-reactivating small-molecule RITA enhances cisplatin-induced cytotoxicity and apoptosis in head and neck cancer. Cancer Lett 2012; 325: 35-41.RohJ-LKoJHMoonSJRyuCHChoiJYKochWMThe p53-reactivating small-molecule RITA enhances cisplatin-induced cytotoxicity and apoptosis in head and neck cancer.Cancer Lett2012325354110.1016/j.canlet.2012.05.020Search in Google Scholar
Roh J-L, Kang SK, Minn I, Califano JA, Sidransky D, Koch WM. p53-Reactivating small molecules induce apoptosis and enhance chemotherapeutic cytotoxicity in head and neck squamous cell carcinoma. Oral Oncol 2011; 47: 8-15.RohJ-LKangSKMinnICalifanoJASidranskyDKochWMp53-Reactivating small molecules induce apoptosis and enhance chemotherapeutic cytotoxicity in head and neck squamous cell carcinoma.Oral Oncol20114781510.1016/j.oraloncology.2010.10.011Search in Google Scholar
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 2013; 14: R36.KimDPerteaGTrapnellCPimentelHKelleyRSalzbergSLTopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.Genome Biol201314R3610.1186/gb-2013-14-4-r36Search in Google Scholar
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 2010; 28: 511-15.TrapnellCWilliamsBAPerteaGMortazaviAKwanGvan BarenMJTranscript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationNat Biotechnol2010285111510.1038/nbt.1621Search in Google Scholar
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol 1995; 289-300.BenjaminiYHochbergYControlling the false discovery rate: a practical and powerful approach to multiple testingJ R Stat Soc Series B Stat Methodol199528930010.1111/j.2517-6161.1995.tb02031.xSearch in Google Scholar
Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000; 28: 27-30.KanehisaMGotoSKEGG: kyoto encyclopedia of genes and genomesNucleic Acids Res200028273010.1093/nar/28.1.27Search in Google Scholar
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, et al. STRING v9. 1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res 2013; 41: D808-D15.FranceschiniASzklarczykDFrankildSKuhnMSimonovicMRothASTRING v9. 1: protein-protein interaction networks, with increased coverage and integrationNucleic Acids Res201341D808D1510.1093/nar/gks1094Search in Google Scholar
Saito R, Smoot ME, Ono K, Ruscheinski J, Wang P-L, Lotia S, et al. A travel guide to Cytoscape plugins. Nat Methods 2012; 9: 1069-76.SaitoRSmootMEOnoKRuscheinskiJWangP-LLotiaSA travel guide to Cytoscape pluginsNat Methods2012910697610.1038/nmeth.2212Search in Google Scholar
Bindea G, Mlecnik B, Hackl H, Charoentong P, Tosolini M, Kirilovsky A, et al. ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics 2009; 25: 1091-93.BindeaGMlecnikBHacklHCharoentongPTosoliniMKirilovskyAClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networksBioinformatics20092510919310.1093/bioinformatics/btp101Search in Google Scholar
Qi W, Chan H, Teng L, Li L, Chuai S, Zhang R et al. Selective inhibition of Ezh2 by a small molecule inhibitor blocks tumor cells proliferation. Proc Natl Acad Sci 2012; 109: 21360-65.QiWChanHTengLLiLChuaiSZhangRSelective inhibition of Ezh2 by a small molecule inhibitor blocks tumor cells proliferation.Proc Natl Acad Sci2012109213606510.1073/pnas.1210371110Search in Google Scholar
Chang C, Hung M. The role of EZH2 in tumour progression. Br J Cancer 2012; 106: 243-47.ChangCHungMThe role of EZH2 in tumour progression.Br J Cancer20121062434710.1038/bjc.2011.551Search in Google Scholar
Xiong S, Wang Q, Zheng L, Gao F, Li J. Identification of candidate molecular markers of nasopharyngeal carcinoma by tissue microarray and in situ hybridization. Med Oncol 2011; 28: 341-48.XiongSWangQZhengLGaoFLiJIdentification of candidate molecular markers of nasopharyngeal carcinoma by tissue microarray and in situ hybridization.Med Oncol2011283414810.1007/s12032-010-9727-5Search in Google Scholar
Li T, Kon N, Jiang L, Tan M, Ludwig T, Zhao Y, et al. Tumor suppression in the absence of p53-mediated cell-cycle arrest, apoptosis, and senescence. Cell 2012; 149: 1269-83.LiTKonNJiangLTanMLudwigTZhaoYTumor suppression in the absence of p53-mediated cell-cycle arrest, apoptosis, and senescenceCell201214912698310.1016/j.cell.2012.04.026Search in Google Scholar
Mirzayans R, Andrais B, Scott A, Murray D. New insights into p53 signaling and cancer cell response to DNA damage: implications for cancer therapy. Biomed Res Int 2012; 2012.MirzayansRAndraisBScottAMurrayDNew insights into p53 signaling and cancer cell response to DNA damage: implications for cancer therapyBiomed Res Int2012201210.1155/2012/170325Search in Google Scholar
Chuang H-C, Yang LP, Fitzgerald AL, Osman A, Woo SH, Myers JN, et al. The p53-Reactivating Small Molecule RITA Induces Senescence in Head and Neck Cancer Cells. PLoS One 2014; 9: e104821.ChuangH-CYangLPFitzgeraldALOsmanAWooSHMyersJNThe p53-Reactivating Small Molecule RITA Induces Senescence in Head and Neck Cancer CellsPLoS One20149e10482110.1371/journal.pone.0104821Search in Google Scholar
de Boer JG. Polymorphisms in DNA repair and environmental interactions. Mutat Res 2002; 509: 201-10.de BoerJGPolymorphisms in DNA repair and environmental interactionsMutat Res20025092011010.1016/S0027-5107(02)00217-8Search in Google Scholar
Song X, Sturgis EM, Jin L, Wang Z, Wei Q, Li G. Variants in nucleotide excision repair core genes and susceptibility to recurrence of squamous cell carcinoma of the oropharynx. Int J Cancer 2013; 133: 695-704.SongXSturgisEMJinLWangZWeiQLiGVariants in nucleotide excision repair core genes and susceptibility to recurrence of squamous cell carcinoma of the oropharynxInt J Cancer201313369570410.1002/ijc.28051Search in Google Scholar
Boehler C, Gauthier LR, Mortusewicz O, Biard DS, Saliou J-M, Bresson A, et al. Poly (ADP-ribose) polymerase 3 (PARP3), a newcomer in cellular response to DNA damage and mitotic progression. Proc Natl Acad Sci 2011; 108: 2783-88.BoehlerCGauthierLRMortusewiczOBiardDSSaliouJ-MBressonAPoly (ADP-ribose) polymerase 3 (PARP3), a newcomer in cellular response to DNA damage and mitotic progressionProc Natl Acad Sci201110827838810.1073/pnas.1016574108Search in Google Scholar
Zhai X, Zhao H, Liu Z, Wang L-E, El-Naggar AK, Sturgis EM, et al. Functional variants of the NEIL1 and NEIL2 genes and risk and progression of squamous cell carcinoma of the oral cavity and oropharynx. Clin Cancer Res 2008; 14: 4345-52.ZhaiXZhaoHLiuZWangL-EEl-NaggarAKSturgisEMFunctional variants of the NEIL1 and NEIL2 genes and risk and progression of squamous cell carcinoma of the oral cavity and oropharynxClin Cancer Res20081443455210.1158/1078-0432.CCR-07-5282Search in Google Scholar
