Isolate code | Primer | Nearest phylogenetic neighbours | Identity percentage |
---|---|---|---|
HFM-2 | 153 F/541 R | Coxsackievirus A6 | 99% |
HFM-5 | 153 F/541 R | Coxsackievirus A6 | 99% |
HFM-9 | 153 F/541 R | Coxsackievirus A6 | 99% |
HFM-10 | 153 F/541 R | Coxsackievirus A6 | 99% |
HFM-11 | 153 F/541 R | Coxsackievirus A6 | 99% |
HFM-12 | 153 F/541 R | Coxsackievirus A6 | 99% |
HFM-14 | 153 F/541 R | Coxsackievirus A6 | 99% |
HFM-15 | 153 F/541 R | Coxsackievirus A6 | 99% |
HFM-16 | 153 F/541 R | Coxsackievirus A6 | 99% |
HFM24 | 153 F/541 R | Coxsackievirus A16 | 99% |
HFM25 | 153 F/541 R | Coxsackievirus A16 | 99% |
HFM26 | 153 F/541 R | Coxsackievirus A16 | 97% |
Year | No. of samples | Coxsackievirus A6 positivity | Coxsackievirus A16 positivity | |
---|---|---|---|---|
2015–2016 | 15 | 12 | 9 | 0 |
2017 | 12 | 7 | 0 | 3 |
Total | 27 | 19 | 9 | 3 |
Target Serotype | Orientation | Sequence |
---|---|---|
Pan-EV-5’UTR Outer | Forward | 5’-CYTTGTGCGCCTGTTTT-3’ |
Reverse | 5’-ATTGTCACCATAAGCAGCC-3’ | |
Pan-EV-5’UTR-Inner | Forward | 5’-CAAGYACTTCTGTMWCCCC-3’ |
Reverse | 5’-CCCAAAGTAGTCGGTTCC-3’ | |
EV-A71-VP1 | Forward | 5’-AGAGCATGATTGAGACACG-3’ |
Reverse | 5’-RTCTTTCTCYTGTTTGTGTTC-3’ | |
CV-A16-VP1 | Forward | 5’-TGCAGACATGATTGACCAG-3’ |
Reverse | 5’-TGCCTACAGTTCTGATGCTA-3’ |