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Methodological Evaluation of Carbapenemase Detection by Different Methods

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13 sept 2024

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Antimicrobial Resistance Collaborators. Global burden of bacterial antimicrobial resistance in 2019: A systematic analysis. Lancet. 2022 Feb;399(10325):629–655. https://doi.org/10.1016/S0140-6736(21)02724-0 Antimicrobial Resistance Collaborators . Global burden of bacterial antimicrobial resistance in 2019: A systematic analysis . Lancet . 2022 Feb ; 399 ( 10325 ): 629 655 . https://doi.org/10.1016/S0140-6736(21)02724-0 Search in Google Scholar

Chen JS, Ma E, Harrington LB, Da Costa M, Tian X, Palefsky JM, Doudna JA. CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity. Science. 2018 Apr;360(6387): 436–439. https://doi.org/10.1126/science.aar6245 Chen JS Ma E Harrington LB Da Costa M Tian X Palefsky JM Doudna JA. CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity . Science . 2018 Apr ; 360 ( 6387 ): 436 439 . https://doi.org/10.1126/science.aar6245 Search in Google Scholar

Chen Y, Zhou Z, Jiang Y, Yu Y. Emergence of NDM-1-producing Acinetobacter baumannii in China. J Antimicrob Chemother. 2011 Jun;66(6):1255–1259. https://doi.org/10.1093/jac/dkr082 Chen Y Zhou Z Jiang Y Yu Y. Emergence of NDM-1-producing Acinetobacter baumannii in China . J Antimicrob Chemother . 2011 Jun ; 66 ( 6 ): 1255 1259 . https://doi.org/10.1093/jac/dkr082 Search in Google Scholar

CLSI. Performance standards for antimicrobial susceptibility testing. 30th ed. CLSI supplement M100. Wayne (USA): Clinical and Laboratory Standards Institute; 2020. CLSI . Performance standards for antimicrobial susceptibility testing . 30th ed. CLSI supplement M100 . Wayne (USA) : Clinical and Laboratory Standards Institute ; 2020 . Search in Google Scholar

Diene SM, Rolain JM. Carbapenemase genes and genetic platforms in Gram-negative bacilli: Enterobacteriaceae, Pseudomonas and Acinetobacter species. Clin Microbiol Infect. 2014 Sep;20(9):831–838. https://doi.org/10.1111/1469-0691.12655 Diene SM Rolain JM. Carbapenemase genes and genetic platforms in Gram-negative bacilli: Enterobacteriaceae, Pseudomonas and Acinetobacter species . Clin Microbiol Infect . 2014 Sep ; 20 ( 9 ): 831 838 . https://doi.org/10.1111/1469-0691.12655 Search in Google Scholar

Doi Y, Potoski BA, Adams-Haduch JM, Sidjabat HE, Pasculle AW, Paterson DL. Simple disk-based method for detection of Klebsiella pneumoniae carbapenemase-type β-lactamase by use of a boronic acid compound. J Clin Microbiol. 2008 Dec;46(12):4083–4086. https://doi.org/10.1128/jcm.01408-08 Doi Y Potoski BA Adams-Haduch JM Sidjabat HE Pasculle AW Paterson DL. Simple disk-based method for detection of Klebsiella pneumoniae carbapenemase-type β-lactamase by use of a boronic acid compound . J Clin Microbiol . 2008 Dec ; 46 ( 12 ): 4083 4086 . https://doi.org/10.1128/jcm.01408-08 Search in Google Scholar

Falcone M, Daikos GL, Tiseo G, Bassoulis D, Giordano C, Galfo V, Leonildi A, Tagliaferri E, Barnini S, Sani S, et al. Efficacy of ceftazidime-avibactam plus aztreonam in patients with bloodstream infections caused by metallo-β-lactamase-producing Enterobacterales. Clin Infect Dis. 2021 Jun 01;72(11):1871–1878. https://doi.org/10.1093/cid/ciaa586 Falcone M Daikos GL Tiseo G Bassoulis D Giordano C Galfo V Leonildi A Tagliaferri E Barnini S Sani S Efficacy of ceftazidime-avibactam plus aztreonam in patients with bloodstream infections caused by metallo-β-lactamase-producing Enterobacterales . Clin Infect Dis . 2021 Jun; 72 ( 11 ): 1871 1878 . https://doi.org/10.1093/cid/ciaa586 Search in Google Scholar

Gu D, Yan Z, Cai C, Li J, Zhang Y, Wu Y, Yang J, Huang Y, Zhang R, Wu Y. Comparison of the NG-test Carba 5, colloidal gold immunoassay (CGI) test, and Xpert Carba-R for the rapid detection of car-bapenemases in carbapenemase-producing organisms. Antibiotics. 2023 Feb;12(2):300. https://doi.org/10.3390/antibiotics12020300 Gu D Yan Z Cai C Li J Zhang Y Wu Y Yang J Huang Y Zhang R Wu Y. Comparison of the NG-test Carba 5, colloidal gold immunoassay (CGI) test, and Xpert Carba-R for the rapid detection of car-bapenemases in carbapenemase-producing organisms . Antibiotics . 2023 Feb ; 12 ( 2 ): 300 . https://doi.org/10.3390/antibiotics12020300 Search in Google Scholar

Guzek A, Rybicki Z, Tomaszewski D, Mackiewicz K, Piechota W, Chciałowski A. Outcomes of 23 patients diagnosed with New Delhi metallo-β-lactamase (NDM)-producing Klebsiella pneumoniae infection treated with ceftazidime/avibactam and aztreonam at a single center in Poland. Eur J Clin Microbiol Infect Dis. 2024 Aug; 43(8):1579–1587. https://doi.org/10.1007/s10096-024-04859-y Guzek A Rybicki Z Tomaszewski D Mackiewicz K Piechota W Chciałowski A. Outcomes of 23 patients diagnosed with New Delhi metallo-β-lactamase (NDM)-producing Klebsiella pneumoniae infection treated with ceftazidime/avibactam and aztreonam at a single center in Poland . Eur J Clin Microbiol Infect Dis . 2024 Aug ; 43 ( 8 ): 1579 1587 . https://doi.org/10.1007/s10096-024-04859-y Search in Google Scholar

Jiang T, Hu X, Lin C, Xia Z, Yang W, Zhu Y, Xu H, Tang H, Shen J. Rapid visualization of Clostridioides difficile toxins A and B by multiplex RPA combined with CRISPR-Cas12a. Front Microbiol. 2023 Mar;14:1119395. https://doi.org/10.3389/fmicb.2023.1119395 Jiang T Hu X Lin C Xia Z Yang W Zhu Y Xu H Tang H Shen J. Rapid visualization of Clostridioides difficile toxins A and B by multiplex RPA combined with CRISPR-Cas12a . Front Microbiol . 2023 Mar ; 14 : 1119395 . https://doi.org/10.3389/fmicb.2023.1119395 Search in Google Scholar

Katsiari M, Panagiota G, Likousi S, Roussou Z, Polemis M, Alkiviadis Vatopoulos C, Platsouka ED, Maguina A. Carbapenem-resistant Klebsiella pneumoniae infections in a Greek intensive care unit: Molecular characterisation and treatment challenges. J Glob Antimicrob Resist. 2015 Jun;3(2):123–127. https://doi.org/10.1016/j.jgar.2015.01.006 Katsiari M Panagiota G Likousi S Roussou Z Polemis M Alkiviadis Vatopoulos C Platsouka ED Maguina A. Carbapenem-resistant Klebsiella pneumoniae infections in a Greek intensive care unit: Molecular characterisation and treatment challenges . J Glob Antimicrob Resist . 2015 Jun ; 3 ( 2 ): 123 127 . https://doi.org/10.1016/j.jgar.2015.01.006 Search in Google Scholar

Khalifa HO, Soliman AM, Ahmed AM, Shimamoto T, Nariya H, Matsumoto T, Shimamoto T. High prevalence of antimicrobial resistance in Gram-negative bacteria isolated from clinical settings in Egypt: Recalling for judicious use of conventional antimicrobials in developing nations. Microb Drug Resist. 2019 Apr;25(3):371–385. https://doi.org/10.1089/mdr.2018.0380 Khalifa HO Soliman AM Ahmed AM Shimamoto T Nariya H Matsumoto T Shimamoto T. High prevalence of antimicrobial resistance in Gram-negative bacteria isolated from clinical settings in Egypt: Recalling for judicious use of conventional antimicrobials in developing nations . Microb Drug Resist . 2019 Apr ; 25 ( 3 ): 371 385 . https://doi.org/10.1089/mdr.2018.0380 Search in Google Scholar

Lambert M, Leijonhufvud C, Segerberg F, Melenhorst JJ, Carlsten M. CRISPR/Cas9-based gene engineering of human natural killer cells: Protocols for knockout and readouts to evaluate their efficacy. Methods Mol Biol. 2020;2121:213–239. https://doi.org/10.1007/978-1-0716-0338-3_18 Lambert M Leijonhufvud C Segerberg F Melenhorst JJ Carlsten M. CRISPR/Cas9-based gene engineering of human natural killer cells: Protocols for knockout and readouts to evaluate their efficacy . Methods Mol Biol . 2020 ; 2121 : 213 239 . https://doi.org/10.1007/978-1-0716-0338-3_18 Search in Google Scholar

Li L, Hu S, Chen X. Non-viral delivery systems for CRISPR/Cas9-based genome editing: Challenges and opportunities. Biomaterials. 2018 Jul;171:207–218. https://doi.org/10.1016/j.biomaterials.2018.04.031 Li L Hu S Chen X. Non-viral delivery systems for CRISPR/Cas9-based genome editing: Challenges and opportunities . Biomaterials . 2018 Jul ; 171 : 207 218 . https://doi.org/10.1016/j.biomaterials.2018.04.031 Search in Google Scholar

Ma J, Song X, Li M, Yu Z, Cheng W, Yu Z, Zhang W, Zhang Y, Shen A, Sun H, et al. Global spread of carbapenem-resistant Entero-bacteriaceae: Epidemiological features, resistance mechanisms, detection and therapy. Microbiol Res. 2023 Jan;266:127249. https://doi.org/10.1016/j.micres.2022.127249 Ma J Song X Li M Yu Z Cheng W Yu Z Zhang W Zhang Y Shen A Sun H Global spread of carbapenem-resistant Entero-bacteriaceae: Epidemiological features, resistance mechanisms, detection and therapy . Microbiol Res . 2023 Jan ; 266 : 127249 . https://doi.org/10.1016/j.micres.2022.127249 Search in Google Scholar

Oueslati S, Tlili L, Exilie C, Bernabeu S, Iorga B, Bonnin RA, Dortet L, Naas T. Different phenotypic expression of KPC β-lactamase variants and challenges in their detection. J Antimicrob Chemother. 2020 Mar;75(3):769–771. https://doi.org/10.1093/jac/dkz508 Oueslati S Tlili L Exilie C Bernabeu S Iorga B Bonnin RA Dortet L Naas T. Different phenotypic expression of KPC β-lactamase variants and challenges in their detection . J Antimicrob Chemother . 2020 Mar ; 75 ( 3 ): 769 771 . https://doi.org/10.1093/jac/dkz508 Search in Google Scholar

Reygaert WC. An overview of the antimicrobial resistance mechanisms of bacteria. AIMS Microbiol. 2018 Jun 26;4(3):482–501. https://doi.org/10.3934/microbiol.2018.3.482 Reygaert WC. An overview of the antimicrobial resistance mechanisms of bacteria . AIMS Microbiol . 2018 Jun ; 4 ( 3 ): 482 501 . https://doi.org/10.3934/microbiol.2018.3.482 Search in Google Scholar

Salsman J, Dellaire G. Precision genome editing in the CRISPR era. Biochem Cell Biol. 2017 Apr;95(2):187–201. https://doi.org/10.1139/bcb-2016-0137 Salsman J Dellaire G. Precision genome editing in the CRISPR era . Biochem Cell Biol . 2017 Apr ; 95 ( 2 ): 187 201 . https://doi.org/10.1139/bcb-2016-0137 Search in Google Scholar

Tsou JH, Leng Q, Jiang F. A CRISPR test for detection of circulating nuclei acids. Transl Oncol. 2019 Dec;12(12):1566–1573. https://doi.org/10.1016/j.tranon.2019.08.011 Tsou JH Leng Q Jiang F. A CRISPR test for detection of circulating nuclei acids . Transl Oncol . 2019 Dec ; 12 ( 12 ): 1566 1573 . https://doi.org/10.1016/j.tranon.2019.08.011 Search in Google Scholar

Wang M, Earley M, Chen L, Hanson BM, Yu Y, Liu Z, Salcedo S, Cober E, Li L, Kanj SS, et al; Multi-Drug Resistant Organism Network Investigators. Clinical outcomes and bacterial characteristics of carbapenem-resistant Klebsiella pneumoniae complex among patients from different global regions (CRACKLE-2): A prospective, multicentre, cohort study. Lancet Infect Dis. 2022 Mar;22(3):401–412. https://doi.org/10.1016/S1473-3099(21)00399-6 Wang M Earley M Chen L Hanson BM Yu Y Liu Z Salcedo S Cober E Li L Kanj SS Multi-Drug Resistant Organism Network Investigators Clinical outcomes and bacterial characteristics of carbapenem-resistant Klebsiella pneumoniae complex among patients from different global regions (CRACKLE-2): A prospective, multicentre, cohort study . Lancet Infect Dis . 2022 Mar ; 22 ( 3 ): 401 412 . https://doi.org/10.1016/S1473-3099(21)00399-6 Search in Google Scholar

Xu H, Tang H, Li R, Xia Z, Yang W, Zhu Y, Liu Z, Lu G, Ni S, Shen J. A new method based on LAMP-CRISPR-Cas12a-lateral flow immunochromatographic strip for detection. Infect Drug Resist. 2022 Feb;15:685–696. https://doi.org/10.2147/idr.s348456 Xu H Tang H Li R Xia Z Yang W Zhu Y Liu Z Lu G Ni S Shen J. A new method based on LAMP-CRISPR-Cas12a-lateral flow immunochromatographic strip for detection . Infect Drug Resist . 2022 Feb ; 15 : 685 696 . https://doi.org/10.2147/idr.s348456 Search in Google Scholar

Yahav D, Giske CG, Grāmatniece A, Abodakpi H, Tam VH, Leibovici L. New β-lactam-β-lactamase inhibitor combinations. Clin Microbiol Rev. 2020 Nov;34(1):e00115-20. https://doi.org/10.1128/cmr.00115-20 Yahav D Giske CG Grāmatniece A Abodakpi H Tam VH Leibovici L. New β-lactam-β-lactamase inhibitor combinations . Clin Microbiol Rev . 2020 Nov ; 34 ( 1 ): e00115 - 20 . https://doi.org/10.1128/cmr.00115-20 Search in Google Scholar

Zhang R, Liu L, Zhou H, Chan EW, Li J, Fang Y, Li Y, Liao K, Chen S. Nationwide surveillance of clinical carbapenem-resistant Enterobacteriaceae (CRE) strains in China. EBioMedicine. 2017 May; 19:98–106. https://doi.org/10.1016/j.ebiom.2017.04.032 Zhang R Liu L Zhou H Chan EW Li J Fang Y Li Y Liao K Chen S. Nationwide surveillance of clinical carbapenem-resistant Enterobacteriaceae (CRE) strains in China . EBioMedicine . 2017 May ; 19 : 98 106 . https://doi.org/10.1016/j.ebiom.2017.04.032 Search in Google Scholar

Zhang Y, Wang Q, Yin Y, Chen H, Jin L, Gu B, Xie L, Yang C, Ma X, Li H, et al. Epidemiology of carbapenem-resistant Entero-bacteriaceae infections: Report from the China CRE network. Antimicrob Agents Chemother. 2018 Jan;62(2):e01882-17. https://doi.org/10.1128/aac.01882-17 Zhang Y Wang Q Yin Y Chen H Jin L Gu B Xie L Yang C Ma X Li H Epidemiology of carbapenem-resistant Entero-bacteriaceae infections: Report from the China CRE network . Antimicrob Agents Chemother . 2018 Jan ; 62 ( 2 ): e01882 - 17 . https://doi.org/10.1128/aac.01882-17 Search in Google Scholar

Zhang Z, Wang D, Li Y, Liu Y, Qin X. Comparison of the performance of phenotypic methods for the detection of carbapenem-resistant enterobacteriaceae (CRE) in clinical practice. Front Cell Infect Microbiol. 2022 Feb;12:849564. https://doi.org/10.3389/fcimb.2022.849564 Zhang Z Wang D Li Y Liu Y Qin X. Comparison of the performance of phenotypic methods for the detection of carbapenem-resistant enterobacteriaceae (CRE) in clinical practice . Front Cell Infect Microbiol . 2022 Feb ; 12 : 849564 . https://doi.org/10.3389/fcimb.2022.849564 Search in Google Scholar

Zhen X, Stålsby Lundborg C, Sun X, Gu S, Dong H. Clinical and economic burden of carbapenem-resistant infection or colonization caused by Klebsiella pneumoniae, Pseudomonas aeruginosa, Acinetobacter baumannii: A multicenter study in China. Antibiotics. 2020 Aug;9(8):514. https://doi.org/10.3390/antibiotics9080514 Zhen X Stålsby Lundborg C Sun X Gu S Dong H. Clinical and economic burden of carbapenem-resistant infection or colonization caused by Klebsiella pneumoniae, Pseudomonas aeruginosa, Acinetobacter baumannii: A multicenter study in China . Antibiotics . 2020 Aug ; 9 ( 8 ): 514 . https://doi.org/10.3390/antibiotics9080514 Search in Google Scholar

Zong Z, Feng Y, McNally A. Carbapenem and colistin resistance in Enterobacter: Determinants and clones. Trends Microbiol. 2021 Jun; 29(6):473–476. https://doi.org/10.1016/j.tim.2020.12.009 Zong Z Feng Y McNally A. Carbapenem and colistin resistance in Enterobacter: Determinants and clones . Trends Microbiol . 2021 Jun ; 29 ( 6 ): 473 476 . https://doi.org/10.1016/j.tim.2020.12.009 Search in Google Scholar

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