throat swabs | serum samples | |||
---|---|---|---|---|
sample set | ||||
studied | positive | studied | positive | |
1 | 20 | 20 | 120 | 30 |
2 | 30 | 15 | 30 | 15 |
total | 50 | 35 | 150 | 45 |
(70%) | (30%) |
SARS-CoV-2 gene | EPI_ISL_984307 (210209_3597/2021) | EPI_ISL_984305 (210209_3596/2021) |
---|---|---|
C1247F | C1247F | |
D614G | D614G | |
S | G75V | G75V |
Y453F | Y453F | |
M177T | ||
D343Y | D343Y | |
N | G204L | G204L |
R203K | R203K | |
NS3 | R126M | |
NS7b | L22stop | L22stop |
Q275H | Q275H | |
NSP2 | S138L | S138L |
V541I | V541I | |
D218E | D218E | |
NSP3 | ||
E869D | E869D | |
G37E | G37E | |
NSP9 | P57S | P57S |
NSP12 | P323L | P323L |
NSP13 | K94I | K94I |
A274S | A274S | |
NSP14 | M49I | M49I |
NSP15 | M218T | M218T |
Strain classification | ||
GISAID clade | O | GR |
PANGO lineage | B.1.1.279 | B.1.1.279 |
Nextstrain clade | 20B | 20B |
Positive throat swab | 3 | 8 | 11 | 12 |
---|---|---|---|---|
E gene | 19.4 | 23.9 | 22.3 | 23.9 |
N gene | 24.9 | 29.6 | 27.9 | 28.9 |
RdRp1 | 29.9 | 37.8 | 34.3 | 36.2 |
RdRp2 | 28.8 | 36.9 | 33.6 | 35.5 |