Nutrients Changed the Assembly Processes of Profuse and Rare Microbial Communities in Coals

Abreu NA, Taga ME. Decoding molecular interactions in microbial communities. FEMS Microbiol Rev. 2016 Sep;40(5):648–663. https://doi.org/10.1093/femsre/fuw019 Abreu NA Taga ME Decoding molecular interactions in microbial communities FEMS Microbiol Rev 2016 Sep405648 663 https://doi.org/10.1093/femsre/fuw01910.1093/femsre/fuw019500728427417261Search in Google Scholar

Bottos EM, Kennedy DW, Romero EB, Fansler SJ, Brown JM, Bramer LM, Chu RK, Tfaily MM, Jansson JK, Stegen JC. Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities. FEMS Microbiol Ecol. 2018 Aug 01;94(8). https://doi.org/10.1093/femsec/fiy110 Bottos EM Kennedy DW Romero EB Fansler SJ Brown JM Bramer LM Chu RK Tfaily MM Jansson JK Stegen JC Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities FEMS Microbiol Ecol 2018 Aug 01948 https://doi.org/10.1093/femsec/fiy11010.1093/femsec/fiy11029912311Search in Google Scholar

Bucha M, Detman A, Pleśniak Ł, Drzewicki W, Kufka D, Chojnacka A, Mielecki D, Krajniak J, Jędrysek MO, Sikora A, et al. Microbial methane formation from different lithotypes of Miocene lignites from the Konin Basin, Poland: geochemistry of the gases and composition of the microbial communities. Int J Coal Geol. 2020 Sep;229:103558. https://doi.org/10.1016/j.coal.2020.103558 Bucha M Detman A Pleśniak Ł Drzewicki W Kufka D Chojnacka A Mielecki D Krajniak J Jędrysek MO Sikora A et al Microbial methane formation from different lithotypes of Miocene lignites from the Konin Basin, Poland: geochemistry of the gases and composition of the microbial communities Int J Coal Geol 2020 Sep229103558 https://doi.org/10.1016/j.coal.2020.10355810.1016/j.coal.2020.103558Search in Google Scholar

Cao X, Zhao D, Zeng J, Huang R, He F. Biogeographic patterns of abundant and rare bacterial and microeukaryotic subcommunities in connected freshwater lake zones subjected to different levels of nutrient loading. J Appl Microbiol. 2021 Jan;130(1):123–132. https://doi.org/10.1111/jam.14720 Cao X Zhao D Zeng J Huang R He F Biogeographic patterns of abundant and rare bacterial and microeukaryotic subcommunities in connected freshwater lake zones subjected to different levels of nutrient loading J Appl Microbiol 2021 Jan1301123 132 https://doi.org/10.1111/jam.1472010.1111/jam.1472032427406Search in Google Scholar

Chase JM, Myers JA. Disentangling the importance of ecological niches from stochastic processes across scales. Philos Trans R Soc Lond B Biol Sci. 2011 Aug 27;366(1576):2351–2363. https://doi.org/10.1098/rstb.2011.0063 Chase JM Myers JA Disentangling the importance of ecological niches from stochastic processes across scales Philos Trans R Soc Lond B Biol Sci 2011 Aug 2736615762351–2363 https://doi.org/10.1098/rstb.2011.006310.1098/rstb.2011.0063313043321768151Search in Google Scholar

Chase JM. Stochastic community assembly causes higher biodiversity in more productive environments. Science. 2010 Jun 11; 328(5984): 1388–1391. https://doi.org/10.1126/science.1187820 Chase JM Stochastic community assembly causes higher biodiversity in more productive environments Science 2010 Jun 11 3285984 1388 1391 https://doi.org/10.1126/science.118782010.1126/science.118782020508088Search in Google Scholar

Chen F, He H, Zhao SM, Yao J, Sun Q, Huang G, Xiao D, Tang LF, Leng Y, Tao X. Analysis of microbial community succession during methane production from Baiyinhua lignite. Energy Fuels. 2018 Oct 18;32(10):10311–10320. https://doi.org/10.1021/acs.energyfuels.8b01181 Chen F He H Zhao SM Yao J Sun Q Huang G Xiao D Tang LF Leng Y Tao X Analysis of microbial community succession during methane production from Baiyinhua lignite Energy Fuels 2018 Oct 18321010311 10320 https://doi.org/10.1021/acs.energyfuels.8b0118110.1021/acs.energyfuels.8b01181Search in Google Scholar

Chesson P. Mechanisms of maintenance of species diversity. Annu Rev Ecol Syst. 2000 Nov;31(1):343–366. https://doi.org/10.1146/annurev.ecolsys.31.1.343 Chesson P Mechanisms of maintenance of species diversity Annu Rev Ecol Syst 2000 Nov311343 366 https://doi.org/10.1146/annurev.ecolsys.31.1.34310.1146/annurev.ecolsys.31.1.343Search in Google Scholar

Davis KJ, Lu S, Barnhart EP, Parker AE, Fields MW, Gerlach R. Type and amount of organic amendments affect enhanced biogenic methane production from coal and microbial community structure. Fuel. 2018 Jan;211:600–608. https://doi.org/10.1016/j.fuel.2017.09.074 Davis KJ Lu S Barnhart EP Parker AE Fields MW Gerlach R Type and amount of organic amendments affect enhanced biogenic methane production from coal and microbial community structure Fuel 2018 Jan211600 608 https://doi.org/10.1016/j.fuel.2017.09.07410.1016/j.fuel.2017.09.074Search in Google Scholar

Dawson KS, Strąpoć D, Huizinga B, Lidstrom U, Ashby M, Macalady JL. Quantitative fluorescence in situ hybridization analysis of microbial consortia from a biogenic gas field in Alaska’s Cook Inlet basin. Appl Environ Microbiol. 2012 May 15;78(10):3599–3605. https://doi.org/10.1128/AEM.07122-11 Dawson KS Strąpoć D Huizinga B Lidstrom U Ashby M Macalady JL Quantitative fluorescence in situ hybridization analysis of microbial consortia from a biogenic gas field in Alaska’s Cook Inlet basin Appl Environ Microbiol 2012 May 1578103599 3605 https://doi.org/10.1128/AEM.07122-1110.1128/AEM.07122-11334635622427501Search in Google Scholar

Detman A, Bucha M, Simoneit BRT, Mielecki D, Piwowarczyk C, Chojnacka A, Błaszczyk MK, Jędrysek MO, Marynowski L, Sikora A. Lignite biodegradation under conditions of acidic molasses fermentation. Int J Coal Geol. 2018 Aug;196:274–287. https://doi.org/10.1016/j.coal.2018.07.015 Detman A Bucha M Simoneit BRT Mielecki D Piwowarczyk C Chojnacka A Błaszczyk MK Jędrysek MO Marynowski L Sikora A Lignite biodegradation under conditions of acidic molasses fermentation Int J Coal Geol 2018 Aug196274 287 https://doi.org/10.1016/j.coal.2018.07.01510.1016/j.coal.2018.07.015Search in Google Scholar

Emery J, Canbulat I, Zhang C. Fundamentals of modern ground control management in Australian underground coal mines. Int J Min Sci Technol. 2020 Sep;30(5):573–582. https://doi.org/10.1016/j.ijmst.2020.04.003 Emery J Canbulat I Zhang C Fundamentals of modern ground control management in Australian underground coal mines Int J Min Sci Technol 2020 Sep305573 582 https://doi.org/10.1016/j.ijmst.2020.04.00310.1016/j.ijmst.2020.04.003Search in Google Scholar

Evans S, Martiny JBH, Allison SD. Effects of dispersal and selection on stochastic assembly in microbial communities. ISME J. 2017 Jan;11(1):176–185. https://doi.org/10.1038/ismej.2016.96 Evans S Martiny JBH Allison SD Effects of dispersal and selection on stochastic assembly in microbial communities ISME J 2017 Jan111176 185 https://doi.org/10.1038/ismej.2016.9610.1038/ismej.2016.96531548627494293Search in Google Scholar

Faiz M, Hendry P. Significance of microbial activity in Australian coal bed methane reservoirs – A review. Bull Can Pet Geol. 2006; 54(3):261–272. https://doi.org/10.2113/gscpgbull.54.3.261 Faiz M Hendry P Significance of microbial activity in Australian coal bed methane reservoirs – A review Bull Can Pet Geol 2006 543261 272 https://doi.org/10.2113/gscpgbull.54.3.26110.2113/gscpgbull.54.3.261Search in Google Scholar

Fargione J, Brown CS, Tilman D. Community assembly and invasion: an experimental test of neutral versus niche processes. Proc Natl Acad Sci USA. 2003 Jul 22;100(15):8916–8920. https://doi.org/10.1073/pnas.1033107100 Fargione J Brown CS Tilman D Community assembly and invasion: an experimental test of neutral versus niche processes Proc Natl Acad Sci USA 2003 Jul 22100158916 8920 https://doi.org/10.1073/pnas.103310710010.1073/pnas.103310710016641312843401Search in Google Scholar

Gobet A, Böer SI, Huse SM, van Beusekom JEE, Quince C, Sogin ML, Boetius A, Ramette A. Diversity and dynamics of rare and of resident bacterial populations in coastal sands. ISME J. 2012 Mar;6(3):542–553. https://doi.org/10.1038/ismej.2011.132 Gobet A Böer SI Huse SM van Beusekom JEE Quince C Sogin ML Boetius A Ramette A Diversity and dynamics of rare and of resident bacterial populations in coastal sands ISME J 2012 Mar63542 553 https://doi.org/10.1038/ismej.2011.13210.1038/ismej.2011.132328014421975598Search in Google Scholar

Guo X, Wu L, Huang L. Spatiotemporal patterns in diversity and assembly process of marine protist communities of the Changjiang (Yangtze River) plume and its adjacent waters. Front Microbiol. 2020 Oct 6;11:579290. https://doi.org/10.3389/fmicb.2020.579290 Guo X Wu L Huang L Spatiotemporal patterns in diversity and assembly process of marine protist communities of the Changjiang (Yangtze River) plume and its adjacent waters Front Microbiol 2020 Oct 611579290 https://doi.org/10.3389/fmicb.2020.57929010.3389/fmicb.2020.579290757321533123109Search in Google Scholar

Hanson CA, Fuhrman JA, Horner-Devine MC, Martiny JBH. Beyond biogeographic patterns: processes shaping the microbial landscape. Nat Rev Microbiol. 2012 Jul;10(7):497–506. https://doi.org/10.1038/nrmicro2795 Hanson CA Fuhrman JA Horner-Devine MC Martiny JBH Beyond biogeographic patterns: processes shaping the microbial landscape Nat Rev Microbiol 2012 Jul107497 506 https://doi.org/10.1038/nrmicro279510.1038/nrmicro279522580365Search in Google Scholar

He G, Wang X, Liu X, Xiao X, Huang S, Wu J. Nutrients availability shapes fungal community composition and diversity in the rare earth mine tailings of Southern Jiangxi, China. Russ J Ecol. 2018 Nov; 49(6):524–533. https://doi.org/10.1134/S1067413618660037 He G Wang X Liu X Xiao X Huang S Wu J Nutrients availability shapes fungal community composition and diversity in the rare earth mine tailings of Southern Jiangxi, China Russ J Ecol 2018 Nov 496524 533 https://doi.org/10.1134/S106741361866003710.1134/S1067413618660037Search in Google Scholar

He H, Zhan D, Chen F, Huang ZX, Huang HZ, Wang AK, Huang GH, Muhammad IA, Tao XX. Microbial community succession between coal matrix and culture solution in a simulated methanogenic system with lignite. Fuel. 2020;264:116905. https://doi.org/10.1016/j.fuel.2019.116905 He H Zhan D Chen F Huang ZX Huang HZ Wang AK Huang GH Muhammad IA Tao XX Microbial community succession between coal matrix and culture solution in a simulated methanogenic system with lignite Fuel 2020264116905 https://doi.org/10.1016/j.fuel.2019.11690510.1016/j.fuel.2019.116905Search in Google Scholar

in ’t Zandt MH, Beckmann S, Rijkers R, Jetten MSM, Manefield M, Welte CU. Nutrient and acetate amendment leads to acetoclastic methane production and microbial community change in a non-producing Australian coal well. Microb Biotechnol. 2018 Jul; 11(4):626–638. https://doi.org/10.1111/1751-7915.12853 in ’t Zandt MH Beckmann S Rijkers R Jetten MSM Manefield M Welte CU Nutrient and acetate amendment leads to acetoclastic methane production and microbial community change in a non-producing Australian coal well Microb Biotechnol 2018 Jul 114626 638 https://doi.org/10.1111/1751-7915.1285310.1111/1751-7915.12853601194728925579Search in Google Scholar

Iram A, Akhtar K, Ghauri MA. Coal methanogenesis: A review of the need of complex microbial consortia and culture conditions for the effective bioconversion of coal into methane. Ann Microbiol. 2017 Mar;67(3):275–286. https://doi.org/10.1007/s13213-017-1255-5 Iram A Akhtar K Ghauri MA Coal methanogenesis: A review of the need of complex microbial consortia and culture conditions for the effective bioconversion of coal into methane Ann Microbiol 2017 Mar673275 286 https://doi.org/10.1007/s13213-017-1255-510.1007/s13213-017-1255-5Search in Google Scholar

Ji M, Kong W, Stegen J, Yue L, Wang F, Dong X, Cowan DA, Ferrari BC. Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils. Environ Microbiol. 2020 Jun;22(6):2261–2272. https://doi.org/10.1111/1462-2920.14993 Ji M Kong W Stegen J Yue L Wang F Dong X Cowan DA Ferrari BC Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils Environ Microbiol 2020 Jun2262261 2272 https://doi.org/10.1111/1462-2920.1499310.1111/1462-2920.1499332216022Search in Google Scholar

Jones EJP, Voytek MA, Corum MD, Orem WH. Stimulation of methane generation from nonproductive coal by addition of nutrients or a microbial consortium. Appl Environ Microbiol. 2010 Nov; 76(21):7013–7022. https://doi.org/10.1128/AEM.00728-10 Jones EJP Voytek MA Corum MD Orem WH Stimulation of methane generation from nonproductive coal by addition of nutrients or a microbial consortium Appl Environ Microbiol 2010 Nov 76217013 7022 https://doi.org/10.1128/AEM.00728-1010.1128/AEM.00728-10297624020817801Search in Google Scholar

Jousset A, Bienhold C, Chatzinotas A, Gallien L, Gobet A, Kurm V, Küsel K, Rillig MC, Rivett DW, Salles JF, et al. Where less may be more: how the rare biosphere pulls ecosystems strings. ISME J. 2017 Apr; 11(4):853–862. https://doi.org/10.1038/ismej.2016.174 Jousset A Bienhold C Chatzinotas A Gallien L Gobet A Kurm V Küsel K Rillig MC Rivett DW Salles JF et al Where less may be more: how the rare biosphere pulls ecosystems strings ISME J 2017 Apr 114853 862 https://doi.org/10.1038/ismej.2016.17410.1038/ismej.2016.174536435728072420Search in Google Scholar

Ju F, Xia Y, Guo F, Wang Z, Zhang T. Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants. Environ Microbiol. 2014 Aug;16(8): 2421–2432. https://doi.org/10.1111/1462-2920.12355 Ju F Xia Y Guo F Wang Z Zhang T Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants Environ Microbiol 2014 Aug168 2421 2432 https://doi.org/10.1111/1462-2920.1235510.1111/1462-2920.1235524329969Search in Google Scholar

Konopka A, Lindemann S, Fredrickson J. Dynamics in microbial communities: unraveling mechanisms to identify principles. ISME J. 2015 Jul;9(7):1488–1495. https://doi.org/10.1038/ismej.2014.251 Konopka A Lindemann S Fredrickson J Dynamics in microbial communities: unraveling mechanisms to identify principles ISME J 2015 Jul971488 1495 https://doi.org/10.1038/ismej.2014.25110.1038/ismej.2014.251447870325526370Search in Google Scholar

Li L, Pujari L, Wu C, Huang D, Wei Y, Guo C, Zhang G, Xu W, Liu H, Wang X, et al. Assembly processes and co-occurrence patterns of abundant and rare bacterial community in the Eastern Indian Ocean. Front Microbiol. 2021;12(2234). https://doi.org/10.3389/fmicb.2021.616956 Li L Pujari L Wu C Huang D Wei Y Guo C Zhang G Xu W Liu H Wang X et al Assembly processes and co-occurrence patterns of abundant and rare bacterial community in the Eastern Indian Ocean Front Microbiol 2021122234 https://doi.org/10.3389/fmicb.2021.61695610.3389/fmicb.2021.616956838521134456881Search in Google Scholar

Li Z, Wang D, Lv D, Li Y, Liu H, Wang P, Liu Y, Liu J, Li D. The geologic settings of Chinese coal deposits. Int Geol Rev. 2018 Apr 26;60(5–6):548–578. https://doi.org/10.1080/00206814.2017.1324327 Li Z Wang D Lv D Li Y Liu H Wang P Liu Y Liu J Li D The geologic settings of Chinese coal deposits Int Geol Rev 2018 Apr 26605–6548 578 https://doi.org/10.1080/00206814.2017.132432710.4324/9780429449369-3Search in Google Scholar

Liu B, Yuan L, Shi X, Li Y, Jiang C, Ren B, Sun Q. Variations in microbiota communities with the ranks of coals from three Permian mining areas. Energy Fuels. 2019 Jun 20;33(6):5243–5252. https://doi.org/10.1021/acs.energyfuels.8b04413 Liu B Yuan L Shi X Li Y Jiang C Ren B Sun Q Variations in microbiota communities with the ranks of coals from three Permian mining areas Energy Fuels 2019 Jun 203365243 5252 https://doi.org/10.1021/acs.energyfuels.8b0441310.1021/acs.energyfuels.8b04413Search in Google Scholar

Lupton N, Connell LD, Heryanto D, Sander R, Camilleri M, Down DI, Pan ZJ. Enhancing biogenic methane generation in coalbed methane reservoirs – Core flooding experiments on coals at in situ conditions. Int J Coal Geol. 2020;219:103377. https://doi.org/10.1016/j.coal.2019.103377 Lupton N Connell LD Heryanto D Sander R Camilleri M Down DI Pan ZJ Enhancing biogenic methane generation in coalbed methane reservoirs – Core flooding experiments on coals at in situ conditions Int J Coal Geol 2020219103377 https://doi.org/10.1016/j.coal.2019.10337710.1016/j.coal.2019.103377Search in Google Scholar

McLeish AG, Vick SHW, Grigore M, Pinetown KL, Midgley DJ, Paulsen IT. Adherent microbes in coal seam environments prefer mineral-rich and crack-associated microhabitats. Int J Coal Geol. 2021;234:103652. https://doi.org/10.1016/j.coal.2020.103652 McLeish AG Vick SHW Grigore M Pinetown KL Midgley DJ Paulsen IT Adherent microbes in coal seam environments prefer mineral-rich and crack-associated microhabitats Int J Coal Geol 2021234103652 https://doi.org/10.1016/j.coal.2020.10365210.1016/j.coal.2020.103652Search in Google Scholar

Meslé M, Périot C, Dromart G, Oger P. Biostimulation to identify microbial communities involved in methane generation in shallow, kerogen-rich shales. J Appl Microbiol. 2013 Jan;114(1):55–70. https://doi.org/10.1111/jam.12015 Meslé M Périot C Dromart G Oger P Biostimulation to identify microbial communities involved in methane generation in shallow, kerogen-rich shales J Appl Microbiol 2013 Jan114155 70 https://doi.org/10.1111/jam.1201510.1111/jam.1201522979955Search in Google Scholar

Meyer KM, Memiaghe H, Korte L, Kenfack D, Alonso A, Bohannan BJM. Why do microbes exhibit weak biogeographic patterns? ISME J. 2018 Jun;12(6):1404–1413. https://doi.org/10.1038/s41396-018-0103-3 Meyer KM Memiaghe H Korte L Kenfack D Alonso A Bohannan BJM Why do microbes exhibit weak biogeographic patterns? ISME J 2018 Jun1261404 1413 https://doi.org/10.1038/s41396-018-0103-310.1038/s41396-018-0103-3595609529662146Search in Google Scholar

Midgley DJ, Hendry P, Pinetown KL, Fuentes D, Gong S, Mitchell DL, Faiz M. Characterisation of a microbial community associated with a deep, coal seam methane reservoir in the Gippsland Basin, Australia. Int J Coal Geol. 2010 Jun;82(3–4):232–239. https://doi.org/10.1016/j.coal.2010.01.009 Midgley DJ Hendry P Pinetown KL Fuentes D Gong S Mitchell DL Faiz M Characterisation of a microbial community associated with a deep, coal seam methane reservoir in the Gippsland Basin, Australia Int J Coal Geol 2010 Jun823–4232 239 https://doi.org/10.1016/j.coal.2010.01.00910.1016/j.coal.2010.01.009Search in Google Scholar

Ofiţeru ID, Lunn M, Curtis TP, Wells GF, Criddle CS, Francis CA, Sloan WT. Combined niche and neutral effects in a microbial wastewater treatment community. Proc Natl Acad Sci USA. 2010 Aug 31; 107(35):15345–15350. https://doi.org/10.1073/pnas.1000604107 Ofiţeru ID Lunn M Curtis TP Wells GF Criddle CS Francis CA Sloan WT Combined niche and neutral effects in a microbial wastewater treatment community Proc Natl Acad Sci USA 2010 Aug 31 1073515345 15350 https://doi.org/10.1073/pnas.100060410710.1073/pnas.1000604107293262020705897Search in Google Scholar

Penner TJ, Foght JM, Budwill K. Microbial diversity of western Canadian subsurface coal beds and methanogenic coal enrichment cultures. Int J Coal Geol. 2010 May;82(1–2):81–93. https://doi.org/10.1016/j.coal.2010.02.002 Penner TJ Foght JM Budwill K Microbial diversity of western Canadian subsurface coal beds and methanogenic coal enrichment cultures Int J Coal Geol 2010 May821–281 93 https://doi.org/10.1016/j.coal.2010.02.00210.1016/j.coal.2010.02.002Search in Google Scholar

Pester M, Bittner N, Deevong P, Wagner M, Loy A. A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland. ISME J. 2010 Dec;4(12):1591–1602. https://doi.org/10.1038/ismej.2010.75 Pester M Bittner N Deevong P Wagner M Loy A A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland ISME J 2010 Dec4121591 1602 https://doi.org/10.1038/ismej.2010.7510.1038/ismej.2010.75449957820535221Search in Google Scholar

Philippot L, Spor A, Hénault C, Bru D, Bizouard F, Jones CM, Sarr A, Maron PA. Loss in microbial diversity affects nitrogen cycling in soil. ISME J. 2013 Aug;7(8):1609–1619. https://doi.org/10.1038/ismej.2013.34 Philippot L Spor A Hénault C Bru D Bizouard F Jones CM Sarr A Maron PA Loss in microbial diversity affects nitrogen cycling in soil ISME J 2013 Aug781609 1619 https://doi.org/10.1038/ismej.2013.3410.1038/ismej.2013.34372110623466702Search in Google Scholar

Plyatsuk L, Chernysh Y, Ablieieva I, Bataltsev Y, Vaskin R, Roy I, Yakhnenko E, Roubík H. Modelling and development of technological processes for low rank coal bio-utilization on the example of brown coal. Fuel. 2020; 267e117298. https://doi.org/10.1016/j.fuel.2020.117298 Plyatsuk L Chernysh Y Ablieieva I Bataltsev Y Vaskin R Roy I Yakhnenko E Roubík H Modelling and development of technological processes for low rank coal bio-utilization on the example of brown coal Fuel 2020 267e117298 https://doi.org/10.1016/j.fuel.2020.11729810.1016/j.fuel.2020.117298Search in Google Scholar

Pytlak A, Szafranek-Nakonieczna A, Sujak A, Grządziel J, Polakowski C, Kuźniar A, Proc K, Kubaczyński A, Goraj W, Gałązka A, et al. Stimulation of methanogenesis in bituminous coal from the upper Silesian coal basin. Int J Coal Geol. 2020 Nov; 231:103609. https://doi.org/10.1016/j.coal.2020.103609 Pytlak A Szafranek-Nakonieczna A Sujak A Grządziel J Polakowski C Kuźniar A Proc K Kubaczyński A Goraj W Gałązka A et al Stimulation of methanogenesis in bituminous coal from the upper Silesian coal basin Int J Coal Geol 2020 Nov 231103609 https://doi.org/10.1016/j.coal.2020.10360910.1016/j.coal.2020.103609Search in Google Scholar

Rathi R, Lavania M, Singh N, Sarma PM, Kishore P, Hajra P, Lal B. Evaluating indigenous diversity and its potential for microbial methane generation from thermogenic coal bed methane reservoir. Fuel. 2019 Aug;250:362–372. https://doi.org/10.1016/j.fuel.2019.03.125 Rathi R Lavania M Singh N Sarma PM Kishore P Hajra P Lal B Evaluating indigenous diversity and its potential for microbial methane generation from thermogenic coal bed methane reservoir Fuel 2019 Aug250362 372 https://doi.org/10.1016/j.fuel.2019.03.12510.1016/j.fuel.2019.03.125Search in Google Scholar

Raudsepp MJ, Gagen EJ, Evans P, Tyson GW, Golding SD, Southam G. The influence of hydrogeological disturbance and mining on coal seam microbial communities. Geobiology. 2016 Mar; 14(2):163–175. https://doi.org/10.1111/gbi.12166 Raudsepp MJ Gagen EJ Evans P Tyson GW Golding SD Southam G The influence of hydrogeological disturbance and mining on coal seam microbial communities Geobiology 2016 Mar 142163 175 https://doi.org/10.1111/gbi.1216610.1111/gbi.1216626541089Search in Google Scholar

San Roman M, Wagner A. Diversity begets diversity during community assembly until ecological limits impose a diversity ceiling. Mol Ecol. 2021 Nov;30(22):5874–5887. https://doi.org/10.1111/mec.16161 San Roman M Wagner A Diversity begets diversity during community assembly until ecological limits impose a diversity ceiling Mol Ecol 2021 Nov30225874 5887 https://doi.org/10.1111/mec.1616110.1111/mec.16161929320534478597Search in Google Scholar

Sekhohola LM, Igbinigie EE, Cowan AK. Biological degradation and solubilisation of coal. Biodegradation. 2013 Jun;24(3):305–318. https://doi.org/10.1007/s10532-012-9594-1 Sekhohola LM Igbinigie EE Cowan AK Biological degradation and solubilisation of coal Biodegradation 2013 Jun243305 318 https://doi.org/10.1007/s10532-012-9594-110.1007/s10532-012-9594-123001629Search in Google Scholar

Sharma A, Jani K, Thite V, Dhar SK, Shouche Y. Geochemistry shapes bacterial communities and their metabolic potentials in tertiary coalbed. Geomicrobiol J. 2019 Feb 07;36(2):179–187. https://doi.org/10.1080/01490451.2018.1526987 Sharma A Jani K Thite V Dhar SK Shouche Y Geochemistry shapes bacterial communities and their metabolic potentials in tertiary coalbed Geomicrobiol J 2019 Feb 07362179 187 https://doi.org/10.1080/01490451.2018.152698710.1080/01490451.2018.1526987Search in Google Scholar

Stegen JC, Lin X, Fredrickson JK, Konopka AE. Estimating and mapping ecological processes influencing microbial community assembly. Front Microbiol. 2015 May 01;6:370. https://doi.org/10.3389/fmicb.2015.00370 Stegen JC Lin X Fredrickson JK Konopka AE Estimating and mapping ecological processes influencing microbial community assembly Front Microbiol 2015 May 016370 https://doi.org/10.3389/fmicb.2015.0037010.3389/fmicb.2015.00370441644425983725Search in Google Scholar

Strąpoć D, Picardal FW, Turich C, Schaperdoth I, Macalady JL, Lipp JS, Lin YS, Ertefai TF, Schubotz F, Hinrichs KU, et al. Methane-producing microbial community in a coal bed of the Illinois basin. Appl Environ Microbiol. 2008 Apr 15;74(8):2424–2432. https://doi.org/10.1128/AEM.02341-07 Strąpoć D Picardal FW Turich C Schaperdoth I Macalady JL Lipp JS Lin YS Ertefai TF Schubotz F Hinrichs KU et al Methane-producing microbial community in a coal bed of the Illinois basin Appl Environ Microbiol 2008 Apr 157482424 2432 https://doi.org/10.1128/AEM.02341-0710.1128/AEM.02341-07229313418310416Search in Google Scholar

Su X, Zhao W, Xia D. The diversity of hydrogen-producing bacteria and methanogens within an in situ coal seam. Biotechnol Biofuels. 2018 Dec; 11(1):245. https://doi.org/10.1186/s13068-018-1237-2 Su X Zhao W Xia D The diversity of hydrogen-producing bacteria and methanogens within an in situ coal seam Biotechnol Biofuels 2018 Dec 111245 https://doi.org/10.1186/s13068-018-1237-210.1186/s13068-018-1237-2612899230202440Search in Google Scholar

Szafranek-Nakonieczna A, Zheng YH, Słowakiewicz M, Pytlak A, Polakowski C, Kubaczyński A, Bieganowski A, Banach A, Wolińska A, Stępniewska Z. Methanogenic potential of lignites in Poland. Int J Coal Geol. 2018;196:201–210. https://doi.org/10.1016/j.coal.2018.07.010 Szafranek-Nakonieczna A Zheng YH Słowakiewicz M Pytlak A Polakowski C Kubaczyński A Bieganowski A Banach A Wolińska A Stępniewska Z Methanogenic potential of lignites in Poland Int J Coal Geol 2018196201 210 https://doi.org/10.1016/j.coal.2018.07.01010.1016/j.coal.2018.07.010Search in Google Scholar

Thielemann T, Cramer B, Schippers A. Coalbed methane in the Ruhr basin, Germany: A renewable energy resource? Org Geochem. 2004 Nov;35(11–12):1537–1549. https://doi.org/10.1016/S0146-6380(04)00120-2 Thielemann T Cramer B Schippers A Coalbed methane in the Ruhr basin, Germany: A renewable energy resource? Org Geochem 2004 Nov3511–121537 1549 https://doi.org/10.1016/S0146-6380(04)00120-210.1016/S0146-6380(04)00120-2Search in Google Scholar

Vick SHW, Gong S, Sestak S, Vergara TJ, Pinetown KL, Li Z, Greenfield P, Tetu SG, Midgley DJ, Paulsen IT. Who eats what? Unravelling microbial conversion of coal to methane. FEMS Microbiol Ecol. 2019 Jul 01;95(7):fiz093. https://doi.org/10.1093/femsec/fiz093 Vick SHW Gong S Sestak S Vergara TJ Pinetown KL Li Z Greenfield P Tetu SG Midgley DJ Paulsen IT Who eats what? Unravelling microbial conversion of coal to methane FEMS Microbiol Ecol 2019 Jul 01957fiz093 https://doi.org/10.1093/femsec/fiz09310.1093/femsec/fiz09331216572Search in Google Scholar

Vick SHW, Tetu SG, Sherwood N, Pinetown K, Sestak S, Vallotton P, Elbourne LDH, Greenfield P, Johnson E, Barton D, et al. Revealing colonisation and biofilm formation of an adherent coal seam associated microbial community on a coal surface. Int J Coal Geol. 2016 Apr;160–161:42–50. https://doi.org/10.1016/j.coal.2016.04.012 Vick SHW Tetu SG Sherwood N Pinetown K Sestak S Vallotton P Elbourne LDH Greenfield P Johnson E Barton D et al Revealing colonisation and biofilm formation of an adherent coal seam associated microbial community on a coal surface Int J Coal Geol 2016 Apr;160–16142 50 https://doi.org/10.1016/j.coal.2016.04.01210.1016/j.coal.2016.04.012Search in Google Scholar

Wang A, Shao P, Lan F, Jin H. Organic chemicals in coal available to microbes to produce biogenic coalbed methane: A review of current knowledge. J Nat Gas Sci Eng. 2018 Dec;60:40–48. https://doi.org/10.1016/j.jngse.2018.09.025 Wang A Shao P Lan F Jin H Organic chemicals in coal available to microbes to produce biogenic coalbed methane: A review of current knowledge J Nat Gas Sci Eng 2018 Dec6040 48 https://doi.org/10.1016/j.jngse.2018.09.02510.1016/j.jngse.2018.09.025Search in Google Scholar

Wang B, Wang Y, Cui X, Zhang Y, Yu Z. Bioconversion of coal to methane by microbial communities from soil and from an opencast mine in the Xilingol grassland of northeast China. Biotechnol Biofuels. 2019a Dec;12(1):236. https://doi.org/10.1186/s13068-019-1572-y Wang B Wang Y Cui X Zhang Y Yu Z Bioconversion of coal to methane by microbial communities from soil and from an opencast mine in the Xilingol grassland of northeast China Biotechnol Biofuels 2019a Dec121236 https://doi.org/10.1186/s13068-019-1572-y10.1186/s13068-019-1572-y678139431624498Search in Google Scholar

Wang B, Yu Z, Zhang Y, Zhang H. Microbial communities from the Huaibei coalfield alter the physicochemical properties of coal in methanogenic bioconversion. Int J Coal Geol. 2019b Feb;202:85–94. https://doi.org/10.1016/j.coal.2018.12.004 Wang B Yu Z Zhang Y Zhang H Microbial communities from the Huaibei coalfield alter the physicochemical properties of coal in methanogenic bioconversion Int J Coal Geol 2019b Feb20285 94 https://doi.org/10.1016/j.coal.2018.12.00410.1016/j.coal.2018.12.004Search in Google Scholar

Wu W, Logares R, Huang B, Hsieh C. Abundant and rare picoeukaryotic sub‐communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean. Environ Microbiol. 2017 Jan;19(1):287–300. https://doi.org/10.1111/1462-2920.13606 Wu W Logares R Huang B Hsieh C Abundant and rare picoeukaryotic sub‐communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean Environ Microbiol 2017 Jan191287 300 https://doi.org/10.1111/1462-2920.1360610.1111/1462-2920.1360627871146Search in Google Scholar

Zhou J, Deng Y, Zhang P, Xue K, Liang Y, Van Nostrand JD, Yang Y, He Z, Wu L, Stahl DA, et al. Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proc Natl Acad Sci USA. 2014 Mar 04;111(9):E836–E845. https://doi.org/10.1073/pnas.1324044111 Zhou J Deng Y Zhang P Xue K Liang Y Van Nostrand JD Yang Y He Z Wu L Stahl DA et al Stochasticity, succession, and environmental perturbations in a fluidic ecosystem Proc Natl Acad Sci USA 2014 Mar 041119E836 E845 https://doi.org/10.1073/pnas.132404411110.1073/pnas.1324044111394831624550501Search in Google Scholar

Zhou JZ, Ning DL. Stochastic community assembly: Does it matter in microbial ecology? Microbiol Mol Biol Rev. 2017;81(4): e00002-17. https://doi.org/10.1128/MMBR.00002-17 Zhou JZ Ning DL Stochastic community assembly: Does it matter in microbial ecology? Microbiol Mol Biol Rev 2017814 e00002 17 https://doi.org/10.1128/MMBR.00002-1710.1128/MMBR.00002-17570674829021219Search in Google Scholar