The rapid growth of the human population on earth has caused a significant increase in food demand. To meet this demand, the enhancement of animal protein production, which is the main source of nutrition for human consumption, is highly required. Aquaculture is the ideal source of animal proteins, which could be produced at the lowest cost and very fast. Increasing the productivity of aquaculture in vertical and horizontal expansion leads to an excessive increase of pollutants in the surrounding environment (Ahmad et al. 2017). Biofloc technology (BFT) applications are one of the best aquaculture systems and contribute to the achievement of sustainable development and desired objectives for a clean environment (Bossier and Ekasari 2017). Hargreaves (2013) defined the biofloc as “a mixture of algae, bacteria, protozoans and other kinds of particulate organic matter such as feces and uneaten feed in addition to some of zooplankton and nematodes, formed together to be an integrated and interdependent ecosystem”. Moreover, biofloc systems can operate with zero or low water exchange (0.5% to 1% per day) under high stocking density of fish or shrimp, assuring it to be an ideal system for saving water exchange (Hargreaves 2013).
However, fish species such as tilapia and carps, and shrimps such as pink, brine, and pacific whiteleg shrimp that are physiologically adapted to digest microbial protein obtained from biofloc consumption are usually suitable for biofloc systems (Emerenciano et al. 2013; Hargreaves 2013). On the contrary, biofloc systems are not suitable for fish species such as channel catfish and hybrid striped bass as well as for prawns such as giant tiger prawn and giant freshwater prawn. They cannot tolerate low water quality due to the high concentration of solids (Hargreaves 2013; Panigrahi et al. 2019a). Biofloc is generated by adding organic carbon and high aeration, which reduces toxic dissolved nitrogen in the water, where internal waste treatment processes are emphasized and encouraged (Liu et al. 2019). Although it is a potential technology, the data on operational parameters of BFT is still inadequate. Hence, there is an urgent need for more applied research on operational parameters of BFT to optimize the system, such as immunological effects, microbial associated molecular patterns production, and nutrient recycling (Bossier and Ekasari 2017). Hence, this review has been designed to highlight the application of biofloc systems and urge the development of this system to produce more aquaculture products without any pollution to the environment and with limited natural resources of water and land.
Microbial biotechnology, which deals with applying microorganisms to ensure the security, safety, and usefulness of foods, yielding high-quality products, proper human nutrition, and defense against plant and animal diseases, is still rising with different new technologies for sustainable development in the agricultural field. Nevertheless, uses of microbial biotechnology for sustainable development in aquaculture are critical because of the essential role of microorganisms in the establishment and control of ecosystem facilities, especially nutrient cycling, water quality control, and disease regulation in the culture system (Timmis et al. 2017). Although, several microbial biotechnologies have been applied or are still in the developmental pipeline to increase the productivity in aquaculture by creating the ecofriendly environment to support the growth of other aquatic organisms. These organisms are key agents of pollutant removal and recycling (Bossier and Ekasari 2017; Kabir and Aba 2019; Liu et al. 2019). BFT is one of such novel microbial biotechnologies that has been developed with an excellent ecofriendly technology not only for higher productivity but also for sustainable development (Emerenciano et al. 2017; Abakari et al. 2020a) (Table I). The scientific concepts of BFT grew concomitantly and independently by two groups of researchers. Steve Hopkins led one at the Waddell Mariculture Center, South Carolina, and the other group was led by Avnimelech in Israel (Hopkins et al. 1993; Avnimelech et al. 1994). In both cases, the concepts of active microbial suspension and heterotrophic feed web were used to generate an intensive microbial community for degradation and assimilation of organic residues gathering in the pond in no or limited water exchange condition, which replaced the conventional external biofilter or high water exchange systems in aquaculture (Hopkins et al. 1993; Avnimelech et al. 1994). In BFT, the microbes work for regulation of water quality through the control of nitrogen, resulting in the enhancement of the microbial proteins, which functions as a source of nutrition for aquaculture species. Moreover, the microbes in BFT play a vital role in biosecurity by inhibiting the pathogenic microorganisms’ growth (Emerenciano et al. 2017). For example, heterotrophic bacteria such as
Recent use of biofloc technology (BFT) in fish and prawn culture.
Fish/Prawn species cultured | Technology used | Effect on culture water | Effects on fish/prawn | References |
---|---|---|---|---|
Mullet ( | BFT in integrated cultivation | Modified bacterial nitrification; reduced total suspended solids | Enhanced growth of mullet, but impaired shrimp’s growth | (Holanda et al. 2020) |
Nile tilapia ( | Jaggery-based BFT | Enhanced bacterial assimilation and nitrification; boosted ammonia immobilization | Improved growth and survival; higher immunity to | (Elayaraja et al. 2020) |
Nile tilapia ( | Biochar-based BFT | Reduced total suspended solids; active heterotrophic bacterial assimilation and nitrification; enhanced levels of NO–3 and total nitrogen | No remarkable negative effects of biochar on growth and physiological performance. | (Abakari et al. 2020b) |
Genetically improved Nile tilapia ( | FRP tank culture with isolated probiotic bacteria from BFT | Enrichment of probiotic | Enhanced growth and survival; improved immunological parameters | (Menaga et al. 2020) |
Te Amur minnow ( | BFT with differential protein | No significant change in temperature, total ammonia nitrogen, total phosphorus and NO2-N; reduced pH and dissolved oxygen | Enhanced growth; boosted immune response and digestive enzymes activity; higher expression of antioxidant-related genes | (Yu et al. 2020) |
Shrimp ( | Wheat four-based zero-water exchange BFT | Effective recovery and sustainable water quality without sodium bicarbonate; higher bacterial diversity | Affected growth performance | (Kim et al. 2020) |
Shrimp ( | Biofloc-based super intensive tank system | Low concentrations of TAN and NO–2-N (< 1.0 mg/l) at late stage; higher bacterial diversity including various nitrifying bacteria in Biofloc | Better growth performance in outdoor conditions than in indoors | (Xu et al. 2021) |
Nile tilapia ( | Chestnut polyphenols-based BFT | No data | Improved growth performance; better survival; enhanced mucosal and serum immunity against pathogenic | (Van Doan et al. 2020) |
Nile tilapia ( | BFT with prebiotics and probiotics | Reduction of nitrite concentration | Higher rate of the specific growth, weight gain and final weight; better hematological parameters | (Laice et al. 2021) |
Indian major carps, e.g., rohu ( | BFT for polyculture | Maintenance of NH4-N, NO2-N and NO3-N in the acceptable range of water quality | Satisfactory growth performance (higher rate of specific growth) | (Deb et al. 2020) |
Juvenile of Cachama blanca ( | BFT | Maintenance of the all parameters of water quality in the acceptable range except NH–4 and NO–2 | Improved growth performance | (Sandoval-Vargas et al. 2020) |
Bluegill ( | Corn starch or sucrose-sugar-based BFT | Lower number of human pathogens; raised ammonia level and reduced dissolved oxygen level | Reduced growth performance and higher mortality rate | (Fischer et al. 2020) |
Successful fish farming is entirely dependent on the physicochemical and biological qualities of water. Consequently, water quality control is required for optimum ponds management (Sharma et al. 2018). Some studies suggest that the ratio between nitrogen (N) and carbon (C) in the water during the period of aquaculture should be controlled by implementing successful biofloc technology (Avnimelech 2009). Thus, the BFT is an integrated system (Fig. 1), and the quality of this system, which depends on the biotic composition of biofloc and the quantity of suspended solids, is checked with Imhoff cones. For checking the biotic composition of biofloc, water collected from the system is reserved in Imhoff cones for precipitation. After 15 minutes of precipitation, we can see the aggregates of heterotrophic bacteria, algae, entangled zooplankton including protozoa, rotifers, diatoms, uneaten feed, other dead organic matter, and the suspended particles, all of which reflect the quality of biofloc (Sharma et al. 2018). Some additives to the water can improve the BFT system; for example, the addition of carbohydrates to reduce toxic ammonia can promote the concentration of microorganisms within the biofloc as well as multiplication of heterotrophic bacteria to enhance the production of proteins and to reduce the growth of pathogenic strains (Panigrahi et al. 2019b).
Fig. 1.
Role of microbial communities in biofloc technology (BFT) to improved water quality and fish yield in freshwater indoor and outdoor pond aquaculture (Liu et al. 2019).

Fish and shrimp ponds contain a high load of nutrients because of the vast amount of feeds. Almost 50–70% of feeds is in the water or in the sediment, thus resulting in water quality deterioration due to the imbalance of carbon and nitrogen in the culture pond. In such fish and shrimp ponds, biofloc technology can improve water quality by balancing carbon and nitrogen in the aquaculture system by photosynthesis and nitrification processes (Crab et al. 2012). It was reported that the optimum ratio of carbon and nitrogen in biofloc could help to maintain the water quality to raise Pacific white leg shrimp in lower salinity for inland culture. In turn, it decreases the possibility of land pollution by the release of saline wastewater from the shrimp pond (Kumar et al. 2019). Furthermore, the biofloc working on enhancement of the physicochemical parameters of water to the optimum range is essential for the proper growth of fishes and shrimp (Sharma et al. 2018). A study reported that mullet (
In BFT, heterotrophic bacteria are the most common microbial community members forming the structure of biofloc. Simultaneously, the chemoautotrophic nitrifiers are fewer in number than other types of bacteria, which in turn leads to less efflux of nitrogen to the ecosystem of the pond. Also, actinobacteria stimulate the formation of biofloc and could be necessary for secondary benefits of protecting against fish pathogens. However, they may upsurge the accumulation of off-flavor in the fish flesh and water (Liu et al. 2019). Some additives like glucose, starch, and glycerol are preferred as carbon sources to cultivate the biofloc outdoor, and these carbon sources are not only affecting the microbial community structure and composition but also affect the number of pathogenic bacteria, for example,
Moreover, nitrifying bacteria in biofloc, such as ammonia oxidizers, oxidize ammonia to nitrite, and then nitrite oxidizers, oxidize nitrite to nitrate (Chen et al. 2006). Both nitrite and nitrate can damage aquatic animals’ gill tissue, resulting in problems with respiration and/or higher mortality (Lin and Chen 2001; Kuhn et al. 2010b). Hence, some factors such as temperature, salinity, alkalinity, pH, dissolved oxygen, settling solids, total suspended solids, and orthophosphate have to be monitored continuously and practically in biofloc technology as shown in Table II (Emerenciano et al. 2017). Better water quality in BFT results from a complex interaction among different water parameters. Hence, the demand for more research in this field is increasing day by day to better understand this complex interaction of parameter of water quality to develop the aquaculture production methods.
The key factors of water quality checked in BFT systems and its optimal and/or normal detected ranges (Emerenciano et al. 2017).
Factors | Normal and/or ideal detected ranges | Remarks |
---|---|---|
Temperature | 28–30° (usually perfect for species in tropical region) | In addition to shrimp and fish, microbial growth might be affected by low temperatures (∼ 20°C) |
pH | pH 6.8 to 8.0 | Optimum pH values in BFT are less than pH 7.0 but these might disturb the process of nitrification |
Dissolved oxygen (DO) | Optimum level is above of 4.0 mg/l and as a minimum 60% of saturation | For precise growth and respiration of fish, shrimp and microbiota |
TAN | Depend on pH, optimum level is less than 1 mg/l in pH ≤ 7.0 | pH could play a vital role on toxicity values |
Salinity | Optimum range relied on the cultured fish/shrimp species | It is promising to produce BFT, e.g., from 0 to 50 ppt |
Alkalinity | Ideal level is greater than 100 mg/l | Greater values of alkalinity aid in assimilation of nitrogen by heterotrophic bacteria as well as assist in process of nitrification by chemoautotrophic bacteria |
Nitrite | Optimum level is less than 1 mg/l | One of the critical factors (hard to regulate). Distinct attention to be required |
Orthophosphate | Optimum range from 0.5 mg/l to 20 mg/l | In these ranges, usually nontoxic to the cultured fish and shrimp |
Nitrate | Optimum range from 0.5 mg/l to 20 mg/l | The same as orthophosphate |
Total suspended solids (TSS) | Ideal level is less than 500 mg/l | As measured in Imhof cones, the excessive levels of TSS contributes to the DO intake by gill occlusion and heterotrophic community |
Settling solids (SS) | Optimum range relied on the cultured fish/shrimp species. | The same as TSS |
RAS is a modern aquaculture system that could be applied to nurture fish fingerlings in a biosecurity environment to assist in the production schemes; nevertheless, it is still obscure what kind of RAS could be the best for such activities. A comparative study on the role of RAS and BFT on the growth of
The high-density fish and shrimp culture usually demand a waste treatment infrastructure, and biofloc is the best waste treatment system. It was revealed that BFT systems could be efficiently applied to upsurge fish production by establishing an encouraging relationship between biofloc and fish density, which showed a higher capacity to recycle nitrogenous waste at high culture densities (4 million fishes per ha) (Park et al. 2017). Moreover, BFT systems are suitable for achieving aquaculture with an intensive aeration, low or no exchange of water, higher stocking densities and organic input, heavy mixing and an additional advantage of the generation of an additional feed source for some species well-suited for these conditions. However, BFT was developed to secure fish rearing ponds from diseases caused by the pathogens available in incoming water (Hargreaves 2013). It was reported that Jaggery-based BFT enhanced the immunity of Nile tilapia against the pathogenic
BFT has many benefits that distinguish it from many other advanced fish farming systems, such as an ecofriendly culture system with zero drain water after culture. BFT is dominated over other systems because of its higher capacity for reduction of environmental impact, improvement of effective use of land and water, maintenance of the suitable quality of water with minimal water usage and exchange within the rearing ponds, and production of protein-rich biofloc as a supplementary feed for aquatic organisms (Reddy 2019). Likewise, Arias-Moscoso et al. (2018) stated that biofloc could ensure clean water and higher biosecurity by reduction of wastewater pollution as well as lowering the risk of introduction and spread of diseases and pathogens. Moreover, BFT enhances survival rate, growth performance, and feed conversion in fish culture systems, urging its application as a more economical alternative to other culture systems. Because of the generation of biofloc as non-costly and adequate feed, BFT also reduces the need to utilize protein-rich feed resulting in the cost-effective production of cultured animals. Thus, BFT also reduces the burden on capturing fisheries to market cheaper food fish and trash fish for the fishmeal industry (Reddy 2019).
There are many weaknesses in the biofloc system, such as the urgent need for high aeration and water movement, which leads to the increased energy requirement for mixing and aeration. Furthermore, several disadvantages are also reported for BFT, such as reduced response time because of consumption of dissolved oxygen in the water and higher respiration rates, potential pollution from nitrate accumulation, and the requirement of start-up period and alkalinity supplementation (Reddy 2019). Moreover, the performance of BFT may be inconsistent and dependent on seasonal variation of the daylight period for sunlight-exposed systems (Reddy 2019). Finally, BFT has sown frequent requirements of maintenance, which sometimes may be too expensive.
Biofloc technology is an innovative and effective microbial biotechnology in which toxic materials such as nitrogen components can be treated and converted to a useful product like proteins, which can be used by the fish and crustaceans as supplementary feeds. It is an excellent technique to develop the aquaculture system under limited or zero water exchange with high fish stocking density, vigorous aeration, and biota formed by biofloc. BFT presented aquaculture as a sustainable tool for the environmental, social, and economic issues that synchronize with its growth. So this technique needs to be developed by more researches to keep up and maintain the aquaculture systems in the future.
Fig. 1.

The key factors of water quality checked in BFT systems and its optimal and/or normal detected ranges (Emerenciano et al. 2017).
Factors | Normal and/or ideal detected ranges | Remarks |
---|---|---|
Temperature | 28–30° (usually perfect for species in tropical region) | In addition to shrimp and fish, microbial growth might be affected by low temperatures (∼ 20°C) |
pH | pH 6.8 to 8.0 | Optimum pH values in BFT are less than pH 7.0 but these might disturb the process of nitrification |
Dissolved oxygen (DO) | Optimum level is above of 4.0 mg/l and as a minimum 60% of saturation | For precise growth and respiration of fish, shrimp and microbiota |
TAN | Depend on pH, optimum level is less than 1 mg/l in pH ≤ 7.0 | pH could play a vital role on toxicity values |
Salinity | Optimum range relied on the cultured fish/shrimp species | It is promising to produce BFT, e.g., from 0 to 50 ppt |
Alkalinity | Ideal level is greater than 100 mg/l | Greater values of alkalinity aid in assimilation of nitrogen by heterotrophic bacteria as well as assist in process of nitrification by chemoautotrophic bacteria |
Nitrite | Optimum level is less than 1 mg/l | One of the critical factors (hard to regulate). Distinct attention to be required |
Orthophosphate | Optimum range from 0.5 mg/l to 20 mg/l | In these ranges, usually nontoxic to the cultured fish and shrimp |
Nitrate | Optimum range from 0.5 mg/l to 20 mg/l | The same as orthophosphate |
Total suspended solids (TSS) | Ideal level is less than 500 mg/l | As measured in Imhof cones, the excessive levels of TSS contributes to the DO intake by gill occlusion and heterotrophic community |
Settling solids (SS) | Optimum range relied on the cultured fish/shrimp species. | The same as TSS |
Recent use of biofloc technology (BFT) in fish and prawn culture.
Fish/Prawn species cultured | Technology used | Effect on culture water | Effects on fish/prawn | References |
---|---|---|---|---|
Mullet ( | BFT in integrated cultivation | Modified bacterial nitrification; reduced total suspended solids | Enhanced growth of mullet, but impaired shrimp’s growth | ( |
Nile tilapia ( | Jaggery-based BFT | Enhanced bacterial assimilation and nitrification; boosted ammonia immobilization | Improved growth and survival; higher immunity to | ( |
Nile tilapia ( | Biochar-based BFT | Reduced total suspended solids; active heterotrophic bacterial assimilation and nitrification; enhanced levels of NO–3 and total nitrogen | No remarkable negative effects of biochar on growth and physiological performance. | ( |
Genetically improved Nile tilapia ( | FRP tank culture with isolated probiotic bacteria from BFT | Enrichment of probiotic | Enhanced growth and survival; improved immunological parameters | ( |
Te Amur minnow ( | BFT with differential protein | No significant change in temperature, total ammonia nitrogen, total phosphorus and NO2-N; reduced pH and dissolved oxygen | Enhanced growth; boosted immune response and digestive enzymes activity; higher expression of antioxidant-related genes | ( |
Shrimp ( | Wheat four-based zero-water exchange BFT | Effective recovery and sustainable water quality without sodium bicarbonate; higher bacterial diversity | Affected growth performance | ( |
Shrimp ( | Biofloc-based super intensive tank system | Low concentrations of TAN and NO–2-N (< 1.0 mg/l) at late stage; higher bacterial diversity including various nitrifying bacteria in Biofloc | Better growth performance in outdoor conditions than in indoors | ( |
Nile tilapia ( | Chestnut polyphenols-based BFT | No data | Improved growth performance; better survival; enhanced mucosal and serum immunity against pathogenic | (Van |
Nile tilapia ( | BFT with prebiotics and probiotics | Reduction of nitrite concentration | Higher rate of the specific growth, weight gain and final weight; better hematological parameters | ( |
Indian major carps, e.g., rohu ( | BFT for polyculture | Maintenance of NH4-N, NO2-N and NO3-N in the acceptable range of water quality | Satisfactory growth performance (higher rate of specific growth) | ( |
Juvenile of Cachama blanca ( | BFT | Maintenance of the all parameters of water quality in the acceptable range except NH–4 and NO–2 | Improved growth performance | ( |
Bluegill ( | Corn starch or sucrose-sugar-based BFT | Lower number of human pathogens; raised ammonia level and reduced dissolved oxygen level | Reduced growth performance and higher mortality rate | ( |