Populations | Source of variation in populations | d.f. | Sum of squares | Variance components | Percentage of variation | Haplotype diversity | Nucleotide diversity | |
---|---|---|---|---|---|---|---|---|
Companies | Company_1 | Among | 4 | 21.55 | 0.189 | 19.55 | 0.009 | |
Company_2 | ||||||||
Company_3 | Within | 118 | 92.103 | 0.780 | 80.45 | 0.582 | ||
Company_4 | ||||||||
Company_5 | ||||||||
Greenhousecenters | Demre | Among | 2 | 8.612 | 0.134 | 23.48 | ||
Kumluca | 0.493 | 0.005 | ||||||
Aksu | Within | 83 | 36.105 | 0.439 | 76.52 | |||
Natural areas | Geyikbayiri | |||||||
Phaselis | Among | 3 | 60.13 | 0.679 | 47.55 | |||
Termessos | Within | 110 | 82.49 | 0.749 | 52.45 | 0.805 | 0.012 | |
Bayatbademler | ||||||||
All populations (including outgroup) | Among | 12 | 114.828 | 0.368 | 34.59 | 0.697 | 0.010 | |
Within | 303 | 211.032 | 0.696 | 65.41 |
Primers (5′-3′) | Gene/size | References |
---|---|---|
F-CAACATTTATTTTGATTTTTTGG | COI/758 bp | Sperling and Hickey (1994) |
F-TACTACCATGAGGACAAATATC | CytB/434 bp |
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | −0.48 | −0.80 | −0.25 | 0.00 | −0.24 | −0.91 | −0.85 | −0.25 | −0.03 | −0.13 | 0.02 | −0.19 | |
2 | −0.85 | 0.07* | 0.22** | 0.26** | 0.22** | 0.23** | 0.22** | 0.25** | 0.40** | 0.37** | 0.27** | 0.33** | |
3 | −0.30 | 0.23** | 0.21** | 0.10* | 0.17** | 0.08** | 0.08** | 0.23** | 0.32** | 0.27** | 0.27** | 0.27** | |
4 | −0.63 | 0.08* | 0.16** | 0.37** | 0.15** | 0.34** | 0.36** | 0.04 | 0.28** | 0.27** | 0.26** | 0.18** | |
5 | −0.63 | −0.01 | 0.30** | 0.15** | 0.37** | 0.06 | 0.07 | 0.38** | 0.49** | 0.43** | 0.50** | 0.41** | |
6 | −0.04 | 0.06 | 0.26** | 0.14* | 0.13* | 0.34** | 0.35** | 0.15** | 0.21** | 0.18** | 0.24** | 0.20** | |
7 | −0.24 | 0.18** | 0.23** | 0.05 | 0.26** | 0.22** | 0.06 | 0.34** | 0.45** | 0.39** | 0.46** | 0.37** | |
8 | −0.80 | 0.01 | 0.26** | 0.13** | 0.02 | 0.13** | 0.23** | 0.37** | 0.48** | 0.41** | 0.48** | 0.39** | |
9 | −0.89 | 0.00 | 0.28** | 0.17** | 0.00 | 0.27** | 0.27** | 0.03 | 0.28** | 0.26** | 0.27** | 0.15** | |
10 | −0.75 | 0.05 | 0.19** | 0.12* | 0.10* | 0.16** | 0.17** | 0.05* | 0.08 | 0.02 | 0.27** | 0.14* | |
11 | 0.72 | 0.57** | 0.26** | 0.53** | 0.74** | 0.64** | 0.56** | 0.62** | 0.78** | 0.47** | 0.31** | 0.12** | |
12 | −0.03 | 0.34** | −0.00 | 0.23** | 0.41** | 0.37** | 0.30** | 0.37** | 0.40** | 0.30** | 0.39** | 0.27** | |
13 | 0.45* | 0.55** | 0.40** | 0.54** | 0.67** | 0.67** | 0.59** | 0.58** | 0.67** | 0.48** | 0.74** | 0.48** |
Populations | Source of variation in populations | d.f. | Sum of squares | Variance components | Percentage of variation | Haplotype diversity | Nucleotide diversity | |
---|---|---|---|---|---|---|---|---|
Companies | Company_1 | Among | 4 | 95.889 | 0.730 | 21.67 | 0.439 | 0.017 |
Company_2 | ||||||||
Company_3 | 141 | |||||||
Company_4 | Within | 372.467 | 2.641 | 78.33 | ||||
Company_5 | ||||||||
Greenhousecenters | Demre | Among | 2 | 60.639 | 1.096 | 35.65 | 0.380 | 0.014 |
Kumluca | Within | 75 | 148.425 | 1.979 | 64.35 | |||
Aksu | ||||||||
Natural areas | Geyikbayiri Phaselis | Among | 3 | 116.624 | 1.197 | 20.00 | 0.799 | 0.030 |
Termessos Bayatbademler | Within | 110 | 526.946 | 4.790 | 80.00 | |||
All populations (including outgroup) | Among | 12 | 422.418 | 1.227 | 27.53 | 0.608 | 0.023 | |
Within | 328 | 1059.940 | 3.231 | 72.47 |
Populations | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Outgroup | Lecocq_2013 | 1 | |||||||||||||||
Company_1 | 17 | 6 | 1 | 1 | |||||||||||||
Company_2 | 13 | 11 | 3 | 1 | |||||||||||||
Companies | Company_3 | 9 | 1 | 1 | 3 | ||||||||||||
Company_4 | 22 | 6 | |||||||||||||||
Company_5 | 14 | 14 | |||||||||||||||
Demre | 18 | 12 | |||||||||||||||
Greenhouse centers | Kumluca | 18 | 4 | 1 | 5 | ||||||||||||
Aksu | 18 | 2 | |||||||||||||||
Geyikbayiri | 17 | 1 | 4 | 4 | |||||||||||||
Phaselis | 4 | 26 | |||||||||||||||
Natural areas | Termessos | 15 | 15 | ||||||||||||||
Bayatbademler | 16 | 12 | |||||||||||||||
Total | 166 | 32 | 1 | 1 | 26 | 3 | 2 | 13 | 1 | 3 | 16 | 12 | 26 | 5 | 4 | 5 |
Population | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 | H10 | H11 | H12 | H13 | H14 | H15 | H16 | H17 | H18 | H19 | H20 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Outgroup | Lecocq_2013 | 1 | |||||||||||||||||||
Company_1 | 20 | 8 | |||||||||||||||||||
Company_2 | 24 | 3 | 3 | ||||||||||||||||||
Companies | Company_3 | 18 | 11 | 1 | |||||||||||||||||
Company_4 | 28 | ||||||||||||||||||||
Company_5 | 18 | 12 | |||||||||||||||||||
Demre | 20 | 2 | |||||||||||||||||||
Greenhouse centers | Kumluca | 25 | 3 | ||||||||||||||||||
Aksu | 16 | 8 | 1 | 1 | 2 | ||||||||||||||||
Geyikbayiri | 11 | 14 | 3 | ||||||||||||||||||
Natural areas | Phaselis | 15 | 2 | 13 | |||||||||||||||||
Termessos | 26 | 4 | |||||||||||||||||||
Bayatbademler | 14 | 11 | 3 | ||||||||||||||||||
Total | 210 | 8 | 8 | 1 | 12 | 2 | 12 | 3 | 3 | 2 | 11 | 3 | 2 | 13 | 14 | 3 | 26 | 4 | 1 | 3 |