Open Access

Problems in the Analysis of Genetic Differentiation Among Populations – a Case Study in Quercus robur


Cite

BARRENECHE, T., M. CASASOLI, K. RUSSELL, A. AKKAK, H. MEDDOUR, C. PLOMION, F. VILLANI and A. KREMER (2004): Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs). Theoretical and Applied Genetics 108: 558-566.10.1007/s00122-003-1462-214564395Search in Google Scholar

CHARLESWORTH, B. (1998): Measures of Divergence Between Populations and the Effect of Forces that Reduce Variability. Mol. Biol. Evol. 15: 538-543.10.1093/oxfordjournals.molbev.a0259539580982Open DOISearch in Google Scholar

CROW, J. F. and M. KIMURA (1970): An Introduction to Population Genetics Theory. Harper and Row, New York.Search in Google Scholar

DEGEN, B., R. STREIFF and B. ZIEGENHAGEN (1999): Comparative study of genetic variation and differentiation of two pedunculate oak (Quercus robur) stands using microsatellite and allozyme loci. Heredity 83: 597-603.10.1038/sj.hdy.688622010620033Open DOISearch in Google Scholar

DOW, B. D., M. V. ASHLEY and H. F. HOWE (1995): Characterization of Highly Variable (Ga/Ct) (N) Microsatellites in the Bur Oak, Quercus inacrocarpa. Theoretical and Applied Genetics 91: 137-141.10.1007/BF0022087024169679Search in Google Scholar

DUMOLIN, S., B. DEMESURE and R. J. PETIT (1995): Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated by an efficient PCR method. Theoretical and Applied Genetics 91: 1253-1256.10.1007/BF0022093724170054Search in Google Scholar

GREGORIUS, H.-R. (1987): The relationship between the concepts of genetic diversity and differentiation. Theor. Appl. Genetics 74: 397-401.10.1007/BF0027472424241679Open DOISearch in Google Scholar

GREGORIUS, H.-R. (1998): The system analytical approach to the study of hypotheses. URL http://www.uni-forst.gwdg.de/forst/fg/index.htm.Search in Google Scholar

GREGORIUS, H.-R. (2002): An integrative approach to modeling mating systems of tree populations. In: B. DEGEN, M. D. LOVELESS, A. KREMER 2002. Modelling and Experimental Research on Genetic Processes in Tropical and Temperate Forests. Belém, PA: Embrapa Amazônia Oriental, pp. 42-68.Search in Google Scholar

GREGORIUS, H.-R. and F. BERGMANN (1995): Analysis of isoenzyme genetic profiles observed in forest tree populations. Pp. 79-96. In: PH. BARADAT, W. T. ADAMS, G. MÜLLER-STARCK (eds.): Population Genetics and Genetic Conservation of Forest Trees. SPB Academic Publishing, Amsterdam.Search in Google Scholar

GREGORIUS, H.-R. and J. H. ROBERDS (1986): Measurement of genetical differentiation among subpopulations. Theoretical and Applied Genetics 71: 826-834.10.1007/BF0027642524247710Search in Google Scholar

HASEL, K. and E. SCHWARTZ (2002): Forstgeschichte. Ein Grundriss für Studium und Praxis. Kessel, Remagen.Search in Google Scholar

HEDRICK, P. W. (1999): Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53: 313-318.10.1111/j.1558-5646.1999.tb03767.x28565409Search in Google Scholar

HEDRICK, P. W. (2005): A standardized genetic differentiation measure. Evolution 59: 1633-1638.10.1111/j.0014-3820.2005.tb01814.xSearch in Google Scholar

HERTEL, H. and I. ZASPEL (1996): Investigations on vitality and genetic structure in oak stands. Annales Des Sciences Forestieres 53: 761-773.10.1051/forest:19960252Search in Google Scholar

HEUERTZ, M., J. F. HAUSMAN, O. J. HARDY, G. G. VENDRAMIN, N. FRASCARIA-LACOSTE and X. VEKEMANS (2004): Nuclear microsatellites reveal contrasting patterns of genetic structure between western and southeastern European populations of the common ash (Fraxinus excelsior L.). Evolution 58: 976-988.Search in Google Scholar

KASHI, Y. and D. G. KING (2006): Simple sequence repeats as advantageous mutators in evolution. TRENDS in Genetics 22: 253-259.10.1016/j.tig.2006.03.00516567018Open DOISearch in Google Scholar

KREMER, A., J. L. DUPOUEY, J. D. DEANS, J. COTTRELL, U. CSAIKL, R. FINKELDEY, S. ESPINEL, J. JENSEN, J. KLEINSCHMIT, B. VAN DAM, A. DUCOUSSO, I. FORREST, U. L. DE HEREDIA, A. J. LOWE, M. TUTKOVA, R. C. MUNRO, C. STEINHOFF and V. BADEAU (2002): Leaf morphological differentiation between Quercus robur and Quercus petraea is stable across western European mixed oak stands. Annals of Forest Science 59: 777-787.10.1051/forest:2002065Search in Google Scholar

LATTA, R. G. and J. B. MITTON (1997): A comparison of population differentiation across four classes of gene marker in Limber Pine (Pinus flexilis James). Genetics 146: 1153-1163.10.1093/genetics/146.3.115312080439215916Search in Google Scholar

MANLY, B. F. J. (1997): Randomization, Bootstrap and Monte Carlo Methods in Biology. Chapman & Hall, London, 399 pp.Search in Google Scholar

NEI, M. (1973): Analysis of gene diversity in subdivided populations. Pro. Nat. Acad. Sci. USA 70(12): 3321-3323.10.1073/pnas.70.12.33214272284519626Search in Google Scholar

NAGYLAKI, T. (1998): Fixation Indices in Subdivided Populations. Genetics 148: 1325-1332.10.1093/genetics/148.3.132514600349539445Search in Google Scholar

NEIGEL, J. E. (1997): A comparison of alternative strategies for estimating gene flow from genetic markers. Annu. Rev. Ecol. Syst. 28: 105-128.10.1146/annurev.ecolsys.28.1.105Open DOISearch in Google Scholar

NEIGEL, J. E. (2002): Is FST obsolete? Conservation Genetics 3: 167-173.10.1023/A:1015213626922Open DOISearch in Google Scholar

NIELSEN, R. (2001): Statistical tests of selective neutrality in the age of genomics. Heredity 86: 641-647.10.1046/j.1365-2540.2001.00895.x11595044Open DOISearch in Google Scholar

SLATKIN, M. (1995): A Measure of Population Subdivision Based on Microsatellite Allele Frequencies. Genetics 139: 457-462.10.1093/genetics/139.1.45712063437705646Search in Google Scholar

STEINKELLNER, H., S. FLUSH, C. E. TURETSHEK, C. LEXER, R. STREIFF, A. KREMER, K. BURG and J. GLÖSSL (1997): Identification and characterization of (GA/TC)nmicrosatellite loci from Quercus petraea. Pl. Mol. Bio. 33: 1093-1096.Search in Google Scholar

STREIFF, R., T. LABBE, R. BACILIERI, H. STEINKELLNER, J. GLÖSSL and A. KREMER (1998): Withinpopulation genetic structure in Quercus robur L. and Quercus petraea (Matt.) Liebl. assessed with isozymes and microsatellites. Molecular Ecology 7: 317-328.10.1046/j.1365-294X.1998.00360.xOpen DOISearch in Google Scholar

WEIR, B. S. and C. C. COCKERHAM (1984): Estimating FStatistics for the analysis of population structure. Evolution 38: 1358-1370.Search in Google Scholar

WHITLOCK, M. C. and D. E. MCCAULEY (1999): Indirect measures of gene flow and migration: FST not equal 1/(4Nm + 1). Heredity 82: 117-125.10.1038/sj.hdy.688496010098262Search in Google Scholar

WRIGHT, S. (1978): Evolution and the Genetics of Populations, Vol. 4: Variability within and among Natural Populations. The University of Chicago Press, Chicago.Search in Google Scholar

ZANETTO, A., A. KREMER, G. MÜLLER-STARCK and H. H. HATTEMER (1996): Inheritance of isozymes in pedunculate oak (Quercus robur L.). Journal of Heredity 87: 364-370.10.1093/oxfordjournals.jhered.a023015Search in Google Scholar

eISSN:
2509-8934
Language:
English
Publication timeframe:
Volume Open
Journal Subjects:
Life Sciences, Molecular Biology, Genetics, Biotechnology, Plant Science