Comparative Genome Analysis of a Novel Alkaliphilic Actinobacterial Species Nesterenkonia haasae
, , , e | 24 set 2022
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Article Category: Original Paper
Pubblicato online: 24 set 2022
Pagine: 453 - 461
Ricevuto: 03 mag 2022
Accettato: 31 lug 2022
DOI: https://doi.org/10.33073/pjm-2022-040
Parole chiave
© 2022 Shuang Wang at al., published by Sciendo
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
Fig. 1
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Fig. 3
Fig. 4
antiSMASH results of Nesterenkonia members.
| Most similar known cluster | Similarity | |
|---|---|---|
| Ectoine | 75% | |
| Kocurin | 88% | |
| Ectoine | 75% | |
| T3pks | 3% | |
| Redox-cofactor | 100% | |
| Livipeptin | 66% | |
| Terpenes | 28% | |
| Ectoine | 50% | |
| Chejuenolide A/Chejuenolide B | 7% | |
| Terpenes | 28% | |
| Foxicins A-D | 4% | |
| Ectoine | 75% | |
| Terpenes | 28% | |
| Tetronasin | 3% | |
| Ectoine | 50% | |
| Terpenes | 28% | |
| Ectoine | 50% | |
| Glycopeptidolipid | 20% | |
| Terpenes | 21% | |
| Ectoine | 75% | |
| Terpenes | 28% | |
| Ectoine | 75% | |
| Ectoine | 50% | |
| Terpenes | 28% | |
| Ectoine | 75% | |
| Terpenes | 50% | |
| Ectoine | 75% | |
| Terpenes | 28% | |
| Ectoine | 50% | |
| Terpenes | 21% | |
| Salinichelins | 23% | |
| Ectoine | 75% | |
| Terpenes | 50% | |
| Terpenes | 28% | |
| Tetronasin | 3% | |
| Ectoine | 75% | |
| Pentalenolactone | 15% | |
| Ectoine | 50% | |
| Ishigamide | 11% | |
| Terpenes | 28% | |
| Ectoine | 75% | |
| Lankacidin C | 13% | |
| Terpenes | 50% | |
| Ectoine | 50% | |
| Terpenes | 28% | |
| Pentostatine/Vidarabine | 9% | |
| Ectoine | 75% | |
| Desferrioxamin B | 60% |
Genome attributes of present study Nesterenkonia members.
| Genome completeness (%) | Genome contamination (%) | Genome size (bp) | Genomic DNA G + C (%) | rRNAs | tRNAs | |
|---|---|---|---|---|---|---|
| “stercoripullorum” |
84.3 | 3.7 | 2,634,134 | 65.8 | 0 | 34 |
| 98.3 | 0 | 2,591,866 | 63.7 | 6 | 49 | |
| 98.8 | 1.4 | 3,397,286 | 64.7 | 5 | 49 | |
| 99.1 | 0 | 2,947,649 | 67.5 | 3 | 48 | |
| 99.5 | 0.8 | 3,083,451 | 66.8 | 5 | 50 | |
| 99.1 | 1.2 | 3,433,063 | 60.8 | 7 | 48 | |
| 75.9 | 0.07 | 2,188,008 | 71.7 | 4 | 31 | |
| 99.1 | 1.2 | 2,966,101 | 66.2 | 6 | 47 | |
| 98.5 | 3.2 | 3,002,985 | 67.4 | 6 | 50 | |
| 100 | 0.9 | 2,742,649 | 66.6 | 6 | 55 | |
| 99.5 | 0.07 | 2,958,123 | 66.7 | 6 | 47 | |
| 97.7 | 0.4 | 2,641,000 | 62.8 | 3 | 46 | |
| 97.7 | 0.8 | 3,676,111 | 63.5 | 2 | 46 | |
| 98.3 | 0.07 | 2,524,489 | 61.8 | 5 | 47 | |
| 70.4 | 0.8 | 2,699,453 | 66 | 6 | 48 | |
| 98.1 | 0.8 | 2,551,278 | 66.8 | 6 | 49 | |
| 99.1 | 0.3 | 3,283,675 | 61.1 | 3 | 51 | |
| 98.5 | 1 | 3,017,448 | 67.5 | 6 | 47 | |
| 98.8 | 1.6 | 3,113,980 | 63 | 3 | 49 | |
| 99 | 1.4 | 2,791,176 | 64.2 | 5 | 47 | |
| 99.7 | 0.6 | 3,569,370 | 68.8 | 6 | 49 |