The order Actinomycetales of the phylum of Actinobacteria, commonly known as actinomycetes, comprises of filamentous Gram-positive bacteria with high G+C (> 55%) content, which are found ubiquitously in both aquatic and terrestrial habitats. Actinomycetes exhibit considerable diversity and are often placed as an intermediate group between bacteria and fungi (Subathra Devi et al. 2022). Many actinomycetes are saprophytic, aerobic, or anaerobic bacteria and act as an inexhaustible environmental reservoir of secondary metabolites and industrially important enzymes. It makes them one of the most economically, medically, and agriculturally important groups of prokaryotes (Subramani and Aalbersberg 2012; Nawani et al. 2013; Mukhtar et al. 2017; Subathra Devi et al. 2022). Bioactive natural products derived from actinomycetes are extensively used as medically important antibiotics, anti-tumor agents, immune suppressors and vitamins; antibacterial/antifungal agents in agriculture; and for various other biotechnological applications as hydrolytic enzymes, enzyme-inhibitors, etc. (Gomes et al. 2000; Kumar et al. 2019; Pagmadulam et al. 2020; Song et al. 2020). Their ability to decompose plant biomass by producing various lignocellulolytic enzymes and chelate soil minerals makes their contribution to improving agricultural productivity and mineral recycling in soil compelling (Saini et al. 2015; Javed et al. 2021; Shanthi 2021). Further, actinobacterial endophytic associations are found to be beneficial to their plant counterparts, as actinobacteria can produce plant growth regulators, solubilize minerals, and fix nitrogen (Franco-Correa and Chavarro-Anzola 2016; Bhatti et al. 2017; Yadav et al. 2018; AbdElgawad et al. 2020).
Among the actinomycetes found in different environments, actinomycetes derived from marine and marine-associated habitats are widely acknowledged for their importance in medical, agricultural, and other industrial applications (Sebak et al. 2019; Hernández-Bolaños et al. 2020; Swarna and Gnanadoss 2020; De Simeis and Serra 2021; Jagannathan et al. 2021). Although most bioactive metabolites currently being used are isolated from different actinomycetes, the discovery of novel compounds from this bacterial group has encountered a decline in the last few decades, compelling the scientific community to explore more habitats for new groups of actinomycetes. Hence, different marine-associated territories have garnered scientific interest. Therefore, with their unique physical and chemical properties, mangrove sediments are often studied as a rich source for novel actinomycetes with the potential to yield new useful products (Law et al. 2020).
Mangrove forests are highly productive, dynamic, and relatively rare ecosystems, mainly confined to coastal areas of the world’s tropical and sub-tropical regions (Spalding et al. 2010; Liu et al. 2019). The varying physicochemical parameters of mangrove forests influenced by the tidal actions of the sea throughout the day determine their characteristic biological diversity (Chen et al. 2016; Wang et al. 2019). Marine-derived sediment actinomycetes are well known for their ability to synthesize novel antibiotics with unusual structures and properties than other ordinary soil actinomycetes (Sangkanu et al. 2017; Gong et al. 2018; Hu et al. 2018; Muhammad et al. 2022). This property has been associated with the harsh living environment with high salts concentrations they inhabit producing these secondary metabolites. These compounds have the potential to exhibit their bioactive properties under extreme conditions, making them beneficial in various medical and biotechnological applications (Jensen et al. 2005). Actinomycetes, producing many different antimicrobial compounds, have been isolated from different mangrove sediments in India (Baskaran et al. 2011; Sengupta et al. 2015). Other than antimicrobial compounds, various bioactive compounds like anti-tumor and antiviral agents, antioxidants, enzymes, and anti-fibrotic agents have been isolated from mangrove actinomycetes (Xu et al. 2014; Azman et al. 2015; Indupalli et al. 2018).
Sri Lankan mangrove systems are interspersed along the coastline of the country and are estimated to cover an area of more than 15,000 ha (Edirisinghe et al. 2012; Arulnayagam et al. 2021). Although Sri Lankan mangroves have been extensively studied for their faunal and floral diversity (IUCN 2010; Amarasinghe and Perera 2017; Arulnayagam et al. 2021; Fernando et al. 2022), mangrove sediment microbiology is a relatively new field in Sri Lanka and a largely untapped area for the isolation of new microorganisms that can produce new active secondary metabolites. In the present study, six cultivable actinomycetes isolated from Kadolkele mangrove sediments associated with the Negombo lagoon, Sri Lanka, have been characterized using their phenotypic and genotypic characteristics. Further, these isolates’ extracellular enzyme production and antibacterial activities have been explored, along with the potential use of the pigments produced by selected isolates in biotechnological applications.
The actinobacterial isolates that showed any antibacterial activity in the cross-streak assay were selected and grown in starch-casein broths at 30°C at 100–150 rpm for 5–7 days. After the incubation, 2 ml aliquots of each actinobacterial culture (OD405 ≈ 0.2) were centrifuged at 10,000 rpm for 10 minutes, and the resulting supernatant was filtered. The cell-free supernatant of each selected actinobacterial culture was tested against five different test pathogens (
For the determination of the aeration effect, two sets of starch casein broths (25 ml) in 100 ml Erlenmeyer flasks were inoculated as per the above with the actinomycetes culture. One set was incubated on a rotary shaker at 100 rpm, and the other set was incubated under stationary conditions at room temperature. The significant difference between the dry weights of the biomass resulting from the growth with and without shaking was evaluated separately using a two-tailed, unpaired
To determine the effect of different salinity levels on actinomycetes growth, five sets of starch casein broths (25 ml), additionally supplemented with the different concentrations of sodium chloride (0%, 2%, 4%, 6%, and 8% w/v) were used. Similarly, the initial pH of four sets of starch casein broths (25 ml) in 100 ml Erlenmeyer flasks was separately adjusted at 3, 5, 7, and 9. Inoculated flasks were incubated at room temperature on a rotary shaker at 100 rpm. The growth was estimated after seven days of incubation by measuring the dry weight of microbial biomass.
Characteristics of actinomycete isolates.
Isolate name | Colony morphology | Gram’s reaction | Spore chain morphology | Catalase production | |
---|---|---|---|---|---|
Aerial mass color | Reverse side pigment color | ||||
Ac-1 | greyish white | yellowish green | + | open spirals | + |
Ac-2 | greyish white | yellowish orange | + | biverticillate with spirals | + |
Ac-6 | white | – | + | flexuous | + |
Ac-7 | white | – | + | flexuous | + |
Ac-9 | greyish white | yellowish grey | + | open spirals | + |
Ac-10 | white | – | + | pleomorphic bacilli | + |
Only three of the six isolates gave positive protease and lipase assays results. Interestingly, strains Ac-1, Ac-2, and Ac-9, which were negative for protease production, exhibited lipase production. Similarly, the three strains that produced protease (Ac-6, Ac-7, and Ac-10) showed no lipase activity. Among the isolates, Ac-10 showed the highest enzymatic index for protease, while Ac-1 had the highest enzymatic index for lipase assay (Tukey’s test,
Antibacterial activity of actinomycete isolates against the test strains in the cross-streak assay.
Strain ID | Test strain | |||
---|---|---|---|---|
Ac-1 | ++ | ++ | + | – |
Ac-2 | ++ | + | + | – |
Ac-6 | – | – | – | – |
Ac-7 | – | – | – | – |
Ac-9 | + | + | + | – |
Ac-10 | – | – | – | – |
(+)/(++) – the presence of a zone of inhibition near the growth of actinomycete strain, (++) indicates that the inhibition zone was higher compared to (+)
(–) – the absence of a zone of inhibition near the growth of actinomycete strain
Comparison of growth of actinomycete isolates Ac-1 and Ac-2 under shaking and non-shaking conditions.
Growth condition | Dry weight of the biomass (g)# | |
---|---|---|
Ac-1 | Ac-2 | |
With shaking (at 100 rpm) | 0.023 ± 0.003** | 0.043 ± 0.006* |
Without shaking | 0.000** | 0.057 ± 0.006* |
# – The biomass was obtained by drying the culture resulting from inoculation 25 ml of SCB and incubation for seven days at room temperature under shaking and non-shaking conditions. The values given are the means of three individual replicates (n = 3) with a standard error of mean (± SEM). Means followed by an asterisk/asterisks within a column, are significantly different (unpaired
Four different solvents: 95% alcohol, ethyl acetate, acetone, and chloroform, were separately used to determine the suitable solvent for extracting pigments from isolates Ac-1 and Ac-2. Extraction of pigments with acetone resulted in the intense yellow colored pigment solution compared to pigments extracted with other solvents. Therefore, acetone-extracted pigments of Ac-1 and Ac-2 were used for further studies. Although the strain Ac-9 produced yellow-colored pigments, the yield and the color intensity of the Ac-9 crude pigment extract were not satisfactory for further evaluations. Primarily, as the resulting pigment extract of Ac-9 had a very faint yellow color that could not be improved through the initial experimental conditions, the crude pigment extract of Ac-9 was not evaluated further.
The antibacterial activity of crude microbial pigment extracts was assessed using a standard agar well diffusion assay against
Antibacterial activity of actinomycete crude pigment extracts against test strains in well-diffusion assay.
Test organism | Average diameter of the zone of inhibition (mm) ± SEM* | |
---|---|---|
Ac-1 | Ac-2 | |
– | 21.0 ± 0.5774 | |
– | 18.0 ± 0.0 | |
– | 22.5 ± 0.2881 |
* – Values given are the means of three individual replicates (n = 3) with a standard error of mean (± SEM). Acetone was used as the negative control for the assays.
The potential of yellow-colored pigment of Ac-1 as a fabric colorant was evaluated using six different commercially available fibers: satin, polyester, terin, poplin, silk-cotton-blended fabric, and Khushbu. Depending on the fiber type, different dyeing performances were observed (Fig. 8). However, all the resulting color tones had a good visual quality for all types of fibers, and subsequent cold-water, acid, and alkaline treatments of the dyed fabric resulted in no visible color loss indicating its potential suitability in future biotechnological applications.
Tropical mangrove forests are not only acknowledged as one of the most productive global ecosystems, they also serve as a significant pool of untapped microbial populations with the ability to produce novel secondary metabolites to be used in biotechnological applications (Baskaran et al. 2011; Law et al. 2020). Sri Lankan mangrove systems are interspersed along the coastline of the country. Although the richness of Sri Lankan mangrove forests concerning the floral and faunal diversity has been acknowledged widely (Pinto and Punchihewa 1996; Amarasinghe and Perera 2017; Fernando et al. 2022), the microbial potentials of these unique ecosystems remain elusive. Moreover, mangrove forests are known to harbor diversified actinomycete populations (Baskaran et al. 2011; Zainal Abidin et al. 2016). Actinomycetes are a group of Gram-positive bacteria with greater economic importance due to their potential ability to produce various bioactive secondary metabolites (Hong et al. 2009; Janardhan et al. 2014; Gong et al. 2018). In the current study, we have used surface sediment samples from two sites within the Kadolkele mangrove ecosystem to isolate six actinomycete strains. The sampling sites are located within the area maintained by the Regional Research Centre of the National Aquatic Resources Research and Development Agency, Sri Lanka. ‘Kadolkele’ mangrove forest is associated with Negombo lagoon in the west coast of Sri Lanka and dispersed over an area of 14 ha. Actinomycetes were isolated using modified-SCA. Filter sterilized-sea/mangrove water (50% v/v) obtained from the sampling site or the closer by area of the sampling site was used to prepare diluent and the isolation medium. Further, the isolation medium was supplemented with cycloheximide and nalidixic acid to inhibit the growth of fungi and Gram-negative bacteria from the sediment samples, respectively. SCA is commonly used for the isolation of saccharolytic bacteria, especially actinomycetes, from marine and other environmental samples (Mackay 1977; Baskaran et al. 2011). SCA is considered as one of the most suitable media for the isolation of actinomycetes (Lee et al. 2014; Waheeda and Shyam 2017).
Many studies have shown that actinomycetes isolated from various terrestrial and aquatic ecosystems can produce economically significant components (Subramani and Aalbersberg 2012, 2013; Singh and Dubey 2015). Different
Preliminary screening for the antibacterial activities of the isolates using a cross-streak assay showed that the three pigment-producing isolates, Ac-1, Ac-2, and Ac-9 could inhibit three of the four test organisms. In contrast, no growth inhibition was observed for
Isolates Ac-1, Ac-2, and Ac-9 were identified as
Many genera belonging to the actinomycete group are known to produce pigments of different colors (Parmar and Singh 2018; Vasanthabharathi and Jayalakshmi 2020; Gupta et al. 2022). The majority of the 41 actinomycete strains isolated from soil samples collected from different locations in Nepal were capable of producing pigments of different colors, such as blue, green, yellow, and violet on SCA (Sapkota et al. 2020). Further, many studies have shown that these pigments may harbor bioactive properties such as antibacterial, antifungal, antioxidant, and anticancer properties (Prashanthi et al. 2015; Azman et al. 2018; Mesrian et al. 2021).
The pigments of microbial origins are preferred in industrial applications for various reasons. A yellow-colored pigment, extracted from
Actinomycete strains isolated from ‘Kadolkele’ mangrove sediments in Sri Lanka, exhibited the potential of producing several extracellular enzymes and the ability to inhibit the growth of selected Gram-negative and Gram-positive bacteria. Three isolates were identified as belonging to the genus