Nucleotide positions in |
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Haplotype Number | Frequency | 19 | 20 | 37 | 47 | 54 | 65 | 80 | 98 | 111 | 126 | 129 | 131 | 150 | 165 | 171 | 192 | 238 | 247 | 284 | 342 | 398 | 399 | 406 | 407 | 441 | 447 | 455 |
H 1 | 25 | T | A | G | A | A | T | A | C | T | T | A | A | C | T | T | G | T | A | A | A | C | T | T | C | T | T | G |
H 2 | 1 | . | . | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 3 | 1 | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | C | . | . | . | . | . |
H 4 | 1 | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | T | . | C | . |
H 5 | 1 | . | . | . | . | . | . | . | A | C | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 6 | 1 | G | . | . | C | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 7 | 1 | G | C | A | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 8 | 1 | G | C | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | T | . | . | . | . | . | . | . |
H 9 | 2 | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 10 | 1 | G | C | A | . | . | G | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . |
H 11 | 1 | G | C | A | C | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 12 | 1 | G | C | A | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 13 | 1 | G | C | A | . | G | G | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . |
H 14 | 1 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . |
H 15 | 2 | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 16 | 2 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | . | . |
H 17 | 1 | G | . | A | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . |
H 18 | 1 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | T | . | . | . | . | . | . |
H 19 | 1 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . |
H 20 | 1 | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 21 | 1 | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | C | . | . | . | . | G | . | . | . | . |
H 22 | 1 | G | C | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 23 | 1 | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . |
H 24 | 1 | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
H 25 | 1 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | A | . | C |
H 26 | 1 | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
No. | Sampling Location | Sample Code | Number of samples | |
---|---|---|---|---|
1 | Karaburun- Natural | I-W | 9 | |
2 | Karaburun- Culture | I-C | 9 | |
3 | Çeşme-Natural | II-W | 5 | |
4 | Kuşadası-Natural | III-W | 10 | |
5 | Güllük-Natural | IV-W | 5 | |
6 | Bodrum-Natural | V-W | 4 | |
7 | Çanakkale-Natural | VI-W | 6 | |
8 | Antalya-Natural | VII-W | 5 | |
TOTAL | 53 |
Haplotypes | Sample Code | ||
---|---|---|---|
H 1 | |||
H 2 | H 15 | ||
H 3 | H 16 | ||
H 4 | H 17 | ||
H 5 | H 18 | ||
H 6 | H 19 | ||
H 7 | H 20 | ||
H 8 | H 21 | ||
H 9 | H 22 | ||
H 10 | H 23 | ||
H 11 | H 24 | ||
H 12 | H 25 | ||
H 13 | H 26 | ||
H 14 |
Population | Sample size ( |
Haplotype Diversity ( |
PS | PIR | Nucleotide diversity (π) | Taijm’a’s D | Fu’s Fs | |
---|---|---|---|---|---|---|---|---|
9 | 9 | 1.000 | 6 | 13 | 0.0097(± 0.0012) | −1.513 | −0.380 | |
9 | 3 | 0.417 | 4 | 7 | 0.0014 (± 0.0007) | −0.176 | −5.174** | |
5 | 4 | 0.900 | 1 | 6 | 0.0076 (± 0.0022) | 0.498 | −0.036 | |
10 | 5 | 0.756 | 0 | 1 | 0.0031 (± 0.0005) | −1.276 | −1.320 | |
5 | 2 | 0.400 | 0 | 2 | 0.0008 (± 0.0007) | −0.817 | 0.090 | |
4 | 3 | 0.833 | 0 | 7 | 0.0021 (± 0.0007) | −0.710 | −0.887 | |
6 | 4 | 0.800 | 0 | 7 | 0.0049 (± 0.0014) | −1.390 |
−0.219 | |
5 | 5 | 1.000 | 0 | 3 | 0.0059 (± 0.0014) | −1.162 | −2.371 |
Da | |||||||||
---|---|---|---|---|---|---|---|---|---|
I-C | I-W | II-W | III-W | IV-W | V-W | VI-W | VII-W | ||
Dxy |
|||||||||
Karaburun I-C | 0 | 0.00148 | −0.00045 | 0.00080 | 0.00141 | 0.00169 | 0.00060 | 0.00160 | |
Karaburun I-W | 0.00701 | 0 | 0.00056 | 0.00009 | 0.00000 | 0.00000 | −0.00008 | 0.00000 | |
Çeşme II-W | 0.00815 | 0.00503 | 0 | 0.00014 | 0.00050 | 0.00084 | 0.00000 | 0.00084 | |
Kuşadası III-W | 0.00717 | 0.00233 | 0.00545 | 0 | 0.00006 | 0.00014 | −0.00028 | −0.00004 | |
Güllük IV-W | 0.00666 | 0.00112 | 0.00470 | 0.00201 | 0 | 0.00000 | 0.00000 | 0.00000 | |
Bodrum V-W | 0.00757 | 0.00175 | 0.00566 | 0.00273 | 0.00147 | 0 | 0.00000 | 0.00000 | |
Çanakkale VI-W | 0.00788 | 0.00307 | 0.00622 | 0.00370 | 0.00287 | 0.00349 | 0 | −0.00042 | |
Antalya VII-W | 0.00936 | 0.00363 | 0.00755 | 0.00444 | 0.00335 | 0.00398 | 0.00496 | 0 |
0.00000 | |||||||||
0.22466 |
0.00000 | ||||||||
0.08522 | 0.00077 | 0.00000 | |||||||
0.03716 | 0.07255 | −0.02564 | 0.00000 | ||||||
−0.08257 | 0.16667 | 0.04412 | 0.00474 | 0.00000 | |||||
0.21178 | −0.02273 | −0.03261 | 0.04085 | 0.16667 | 0.00000 | ||||
0.03226 | 0.01562 | −0.08541 | −0.05174 | −0.00737 | −0.02362 | 0.00000 | |||
0.02463 | 0.04000 | −0.06047 | −0.05882 | −0.01205 | 0.00415 | −0.08711 | 0.00000 |
Stations | Common Dentex Natural | Common Dentex Culture | |
---|---|---|---|
(I) Karaburun | Foça offshore |
Akvatur Fish Farm |
|
(II) Çeşme* | Çeşme fish pond |
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(III) Kuşadası** | Çağlar fishery agency |
||
(IV) Güllük | Güllük Gulf |
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(V) Bodrum | Bodrum Şenol Fishery |
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(VI) Çanakkale | Engin Fishery |
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(VII) Antalya | Antalya offshore |