This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.
Aires J.R., Nikaido H.: Aminoglycosides are captured from both periplasm and cytoplasm by the AcrD multidrug efflux transporter of Escherichia coli. J Bacteriol 2005, 187, 1923–1929.AiresJ.R.NikaidoH.Aminoglycosides are captured from both periplasm and cytoplasm by the AcrD multidrug efflux transporter of Escherichia coli20051871923192910.1128/JB.187.6.1923-1929.2005106402815743938Search in Google Scholar
Alikhan N.F., Zhou Z., Sergeant M.J., Achtman M.A.: genomic overview of the population structure of Salmonella. PLoS Genet 2018, 14, e1007261.AlikhanN.F.ZhouZ.SergeantM.J.AchtmanM.A.genomic overview of the population structure of Salmonella201814e100726110.1371/journal.pgen.1007261588639029621240Search in Google Scholar
Alonso C.A., González-Barrio D., Ruiz-Fons F., Ruiz-Ripa L., Torres C.: High frequency of B2 phylogroup among non-clonally related fecal Escherichia coli isolates from wild boars, including the lineage ST131. FEMS Microbiol Ecol 2017, 93, fix016.AlonsoC.A.González-BarrioD.Ruiz-FonsF.Ruiz-RipaL.TorresC.High frequency of B2 phylogroup among non-clonally related fecal Escherichia coli isolates from wild boars, including the lineage ST13120179310.1093/femsec/fix01628365752Search in Google Scholar
AMR One Health Surveillance Committee: Nippon AMR One Health Report (NAOR) 2017. Tokyo: Tuberculosis and Infectious Diseases Control Division, Health Service Bureau, Ministry of Health, Labour and Welfare, 2017.TokyoTuberculosis and Infectious Diseases Control Division, Health Service Bureau, Ministry of Health, Labour and Welfare2017Search in Google Scholar
Clermont O., Gordon D., Denamur E.: Guide to the various phylogenetic classification schemes for Escherichia coli and the correspondence among schemes. Microbiology 2015, 161, 980–988.ClermontO.GordonD.DenamurE.Guide to the various phylogenetic classification schemes for Escherichia coli and the correspondence among schemes201516198098810.1099/mic.0.00006325714816Search in Google Scholar
Clinical and Laboratory Standards Institute (CLSI). Performance Standards for Antimicrobial Susceptibility Testing. 28th ed. CLSI supplement M100. CLSI, 950 West Valley Road, Suite 2500, Wayne, Pennsylvania 19087 USA, 2018.Clinical and Laboratory Standards Institute (CLSI)2500WaynePennsylvania 19087 USA2018Search in Google Scholar
Csányi S., Lehoczi R., Sonkoly K.: National game management database of Hungary. Int J Inform Syst Soc Change 2010, 1, 34–43.CsányiS.LehocziR.SonkolyK.National game management database of Hungary20101344310.4018/978-1-4666-0927-3.ch015Search in Google Scholar
Elkins C.A., Nikaido H.: Substrate specificity of the RND-type multidrug efflux pumps AcrB and AcrD of Escherichia coli is determined predominately by two large periplasmic loops. J Bacteriol 2002, 184, 6490–6498.ElkinsC.A.NikaidoH.Substrate specificity of the RND-type multidrug efflux pumps AcrB and AcrD of Escherichia coli is determined predominately by two large periplasmic loops20021846490649810.1128/JB.184.23.6490-6499.200213544112426336Search in Google Scholar
European Medicines Agency, European Surveillance of Veterinary Antimicrobial Consumption, ‘Sales of veterinary antimicrobial agents in 30 European countries in 2015’. (EMA/184855/2017), 2017.2017Search in Google Scholar
Gatica J., Jurkevitch E., Cytryn E.: Comparative metagenomics and network analyses provide novel insights into the scope and distribution of ß-lactamase homologs in the environment. Front Microbiol 2019, 10, 146.GaticaJ.JurkevitchE.CytrynE.Comparative metagenomics and network analyses provide novel insights into the scope and distribution of ß-lactamase homologs in the environment20191014610.3389/fmicb.2019.00146637839230804916Search in Google Scholar
Heijnen L., Medema G.: Quantitative detection of E. coli, E. coli O157 and other shiga toxin producing E. coli in water samples using a culture method combined with real-time PCR. J Water Health 2006, 4, 487–498.HeijnenL.MedemaG.Quantitative detection of E. coli, E. coli O157 and other shiga toxin producing E. coli in water samples using a culture method combined with real-time PCR2006448749810.2166/wh.2006.0032Search in Google Scholar
Heuer H., Schmitt H., Smalla K.: Antibiotic resistance gene spread due to manure application on agricultural fields. Curr Opin Microbiol 2011, 14, 236–243.HeuerH.SchmittH.SmallaK.Antibiotic resistance gene spread due to manure application on agricultural fields20111423624310.1016/j.mib.2011.04.00921546307Search in Google Scholar
Holman D.B., Brunelle B.W., Trachsel J., Allen H.K.: Meta-analysis to define a core microbiota in the swine gut. mSystems 2017, 2, e00004-17.HolmanD.B.BrunelleB.W.TrachselJ.AllenH.K.Meta-analysis to define a core microbiota in the swine gut20172e000041710.1128/mSystems.00004-17544323128567446Search in Google Scholar
Klose V., Bayer K., Kern C., Goelß F., Fibi S., Wegl G.: Antibiotic resistances of intestinal lactobacilli isolated from wild boars. Vet Microbiol 2014, 168, 240–244.KloseV.BayerK.KernC.GoelßF.FibiS.WeglG.Antibiotic resistances of intestinal lactobacilli isolated from wild boars201416824024410.1016/j.vetmic.2013.11.014Search in Google Scholar
Libisch B., Uzinger N., Biró B., Anton A.: Isolation and characterisation of potentially pathogenic antibiotic-resistant bacterial strains from sewage sludge samples in Hungary. In: Book of Abstracts: The 11th European Meeting on Environmental Chemistry, 8-11 December 2010, Portorož, Slovenia, edited by P. Trebše, M. Petrič, V. Lavtižar, University of Nova Gorica, Nova Gorica, 2010, p. 193.LibischB.UzingerN.BiróB.AntonA.Isolation and characterisation of potentially pathogenic antibiotic-resistant bacterial strains from sewage sludge samples in Hungaryedited byTrebšeP.PetričM.LavtižarV.University of Nova GoricaNova Gorica2010193Search in Google Scholar
Literak I., Dolejska M., Radimersky T., Klimes J., Friedman M., Aarestrup F.M., Hasman H., Cizek A.: Antimicrobial-resistant faecal Escherichia coli in wild mammals in central Europe: multiresistant Escherichia coli producing extended-spectrum β-lactamases in wild boars. J Appl Microbiol 2010, 108, 1702–1711.LiterakI.DolejskaM.RadimerskyT.KlimesJ.FriedmanM.AarestrupF.M.HasmanH.CizekA.Antimicrobial-resistant faecal Escherichia coli in wild mammals in central Europe: multiresistant Escherichia coli producing extended-spectrum β-lactamases in wild boars20101081702171110.1111/j.1365-2672.2009.04572.xSearch in Google Scholar
Munk P., Knudsen B.E., Lukjancenko O., Duarte A.S.R., Luiken R.E.C., Van Gompel L., Smit L.A.M., Schmitt H., Garcia A.D., Hansen R.B., Petersen T.N., Bossers A., Ruppe E., Lund O., Hald T., Pamp S.J., Vigre H., Heederik D., Wagenaar J.A., Mevius D., Aarestrup F.M.: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries. Nat Microbiol 2018, 3, 898–908.MunkP.KnudsenB.E.LukjancenkoO.DuarteA.S.R.LuikenR.E.C.VanGompel L.SmitL.A.M.SchmittH.GarciaA.D.HansenR.B.PetersenT.N.BossersA.RuppeE.LundO.HaldT.PampS.J.VigreH.HeederikD.WagenaarJ.A.MeviusD.AarestrupF.M.Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries2018389890810.1038/s41564-018-0192-9Search in Google Scholar
Ngeleka M., Pritchard J., Appleyard G., Middleton D.M., Fairbrother J.M.: Isolation and association of Escherichia coli AIDA-I/STb, rather than EAST1 pathotype, with diarrhea in piglets and antibiotic sensitivity of isolates. J Vet Diagn Invest 2003, 15, 242–252.NgelekaM.PritchardJ.AppleyardG.MiddletonD.M.FairbrotherJ.M.Isolation and association of Escherichia coli AIDA-I/STb, rather than EAST1 pathotype, with diarrhea in piglets and antibiotic sensitivity of isolates20031524225210.1177/104063870301500305Search in Google Scholar
Pacheco A.B.F., Guth B.E.C., De Almeida D.F., Ferreira L.C.S.: Characterization of enterotoxigenic Escherichia coli by random amplification of polymorphic DNA. Res Microbiol 1996, 147, 175–182.PachecoA.B.F.GuthB.E.C.De AlmeidaD.F.FerreiraL.C.S.Characterization of enterotoxigenic Escherichia coli by random amplification of polymorphic DNA199614717518210.1016/0923-2508(96)80217-8Search in Google Scholar
Rogers S.W., Shaffer C.E., Langen T.A., Jahne M., Welsh R.: Antibiotic-resistant genes and pathogens shed by wild deer correlate with land application of residuals. Ecohealth 2018, 15, 409–425.RogersS.W.ShafferC.E.LangenT.A.JahneM.WelshR.Antibiotic-resistant genes and pathogens shed by wild deer correlate with land application of residuals20181540942510.1007/s10393-018-1316-729524057Search in Google Scholar
Rosenberg E.Y., Ma D., Nikaido H.: AcrD of Escherichia coli is an aminoglycoside efflux pump. J Bacteriol 2000, 182, 1754–1756.RosenbergE.Y.MaD.NikaidoH.AcrD of Escherichia coli is an aminoglycoside efflux pump20001821754175610.1128/JB.182.6.1754-1756.20009447510692383Search in Google Scholar
Schierack P., Römer A., Jores J., Kaspar H., Guenther S., Filter M., Eichberg J., Wieler L.H.: Isolation and characterization of intestinal Escherichia coli clones from wild boars in Germany. Appl Environ Microbiol 2009, 75, 695–702.SchierackP.RömerA.JoresJ.KasparH.GuentherS.FilterM.EichbergJ.WielerL.H.Isolation and characterization of intestinal Escherichia coli clones from wild boars in Germany20097569570210.1128/AEM.01650-08263214419060173Search in Google Scholar
Szmolka A., Anjum M.F., La Ragione R.M., Kaszanyitzky É.J., Nagy B.: Microarray based comparative genotyping of gentamicin resistant Escherichia coli strains from food animals and humans. Vet Microbiol 2012, 156, 110–118.SzmolkaA.AnjumM.F.LaRagione R.M.KaszanyitzkyÉ.J.NagyB.Microarray based comparative genotyping of gentamicin resistant Escherichia coli strains from food animals and humans201215611011810.1016/j.vetmic.2011.09.03022018659Search in Google Scholar
Ushida K., Tsuchida S., Ogura Y., Toyoda A., Maruyama F.: Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae. Anim Sci J 2016, 87, 835–841.UshidaK.TsuchidaS.OguraY.ToyodaA.MaruyamaF.Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae20168783584110.1111/asj.1249226315488Search in Google Scholar
Van Gompel L., Luiken R.E., Sarrazin S., Munk P., Knudsen B.E., Hansen R.B., Mevius D.J., Bossers A., Aarestrup F.M., Dewulf J., Wagenaar J.A., Mevius D.J., Schmitt H., Heederik D.J.J., Dorado-Garcia A., Smit L.A.M.: The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries. J Antimicrob Chemother 2019, 74, 865–876.VanGompel L.LuikenR.E.SarrazinS.MunkP.KnudsenB.E.HansenR.B.MeviusD.J.BossersA.AarestrupF.M.DewulfJ.WagenaarJ.A.MeviusD.J.SchmittH.HeederikD.J.J.Dorado-GarciaA.SmitL.A.M.The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries20197486587610.1093/jac/dky51830649386Search in Google Scholar
Vu-Khac H., Holoda E., Pilipcinec E., Blanco M., Blanco J.E., Dahbi G., Mora A., Lopez C., Gonzalez E.A., Blanco J.: Serotypes, virulence genes, intimin types and PFGE profiles of Escherichia coli isolated from piglets with diarrhoea in Slovakia. Vet J 2007, 174, 176–187.Vu-KhacH.HolodaE.PilipcinecE.BlancoM.BlancoJ.E.DahbiG.MoraA.LopezC.GonzalezE.A.BlancoJ.Serotypes, virulence genes, intimin types and PFGE profiles of Escherichia coli isolated from piglets with diarrhoea in Slovakia200717417618710.1016/j.tvjl.2006.05.01916956777Search in Google Scholar
Wasyl D., Zając M., Lalak A., Skarżyńska M., Samcik I., Kwit R., Jablonski A., Bocian L., Wozniakowski G., Hoszowski A., Szulowski K.: Antimicrobial resistance in Escherichia coli isolated from wild animals in Poland. Microb Drug Resist 2018, 24, 807–815.WasylD.ZającM.LalakA.SkarżyńskaM.SamcikI.KwitR.JablonskiA.BocianL.WozniakowskiG.HoszowskiA.SzulowskiK.Antimicrobial resistance in Escherichia coli isolated from wild animals in Poland20182480781510.1089/mdr.2017.014829185858Search in Google Scholar
Wirth T., Falush D., Lan R., Colles F., Mensa P., Wieler L.H., Karch H., Reeves P.R., Maiden M.C., Ochman H., Achtman M.: Sex and virulence in Escherichia coli an evolutionary perspective. Mol Microbiol 2006, 60, 1136–1151.WirthT.FalushD.LanR.CollesF.MensaP.WielerL.H.KarchH.ReevesP.R.MaidenM.C.OchmanH.AchtmanM.Sex and virulence in Escherichia coli an evolutionary perspective2006601136115110.1111/j.1365-2958.2006.05172.x155746516689791Search in Google Scholar
Zhou Z., Alikhan N.F., Sergeant M.J., Luhmann N., Vaz C., Francisco A.P., Carrico J.A., Achtman M.: GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Res 2018, 28, 1395–1404.ZhouZ.AlikhanN.F.SergeantM.J.LuhmannN.VazC.FranciscoA.P.CarricoJ.A.AchtmanM.GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens2018281395140410.1101/gr.232397.117612063330049790Search in Google Scholar
Zottola T., Montagnaro S., Magnapera C., Sasso S., De Martino L., Bragagnolo A., D’Amici L., Condoleo R., Pisanelli G., Iovane G., Pagnini U.: Prevalence and antimicrobial susceptibility of Salmonella in European wild boar (Sus scrofa); Latium Region – Italy. Comp Immunol Microbiol Infect Dis 2013, 36, 161–168.ZottolaT.MontagnaroS.MagnaperaC.SassoS.De MartinoL.BragagnoloA.D’AmiciL.CondoleoR.PisanelliG.IovaneG.PagniniU.Prevalence and antimicrobial susceptibility of Salmonella in European wild boar (Sus scrofa); Latium Region – Italy20133616116810.1016/j.cimid.2012.11.00423253890Search in Google Scholar