Species group | Species pair | Gene region | Minimum base pair difference | Delineation power | Notes |
---|---|---|---|---|---|
Avenae | 18S | 1 | Inadequate | ||
Avenae | 18S | 4 | Weak | ||
in NJ/ML analyses; potentially | |||||
distinguishable from closely | |||||
related species in isolated | |||||
analyses. | |||||
Avenae | 18S | 1 | Inadequate | ||
Avenae | 18S | 1 | Inadequate | ||
Avenae | 18S | 2 | Inadequate | ||
Avenae | 18S | 3 | Weak | See above note. | |
Avenae | ITS | 0 | Inadequate | ||
Avenae | ITS | 0 | Inadequate | ||
Avenae | ITS | 2 | Weak | Although only two bp different, | |
sequences of |
|||||
clade with some sequences | |||||
of “ |
|||||
been shown to be |
|||||
(see Subbotin |
|||||
Avenae | ITS | 2 | Weak | Despite only two bp difference, | |
sequences of |
|||||
monophyletic clade to | |||||
exclusion of other closely | |||||
related sequences. | |||||
Avenae | 28S | 1 | Inadequate | Only one 28S sequence of | |
comparison. | |||||
Avenae | 28S | 1 | Inadequate | Two 28S sequences of | |
Avenae | 28S | 1 | Inadequate | Only one 28S sequence of | |
comparison. | |||||
Avenae | 28S | 0 | inadequate | See above note. | |
Avenae | 28S | 0 | Inadequate | Two 28S sequences of | |
Avenae | 2 | Weak | Despite only two bp | ||
difference, |
|||||
monophyletic clade within | |||||
Cyperi | ITS | 1 | Inadequate | ||
Cyperi | 28S | 0 | Inadequate | ||
Goettingiana | ITS | 1 | Inadequate | ||
Goettingiana | 28S | 0 | Inadequate | Two 28S sequences of | |
different from one another; one | |||||
potentially misidentified | |||||
Goettingiana | 28S | 2 | Weak | Only one 28S sequence | |
of |
|||||
comparison. | |||||
Goettingiana | 28S | 2 | Weak | Only one 28S sequence of | |
comparison (two on GenBank | |||||
but one appears to actually be | |||||
Goettingiana | 1 | Inadequate | Three |
||
available for |
|||||
15 bp different from others. | |||||
Schachtii | 18S | 2 | Weak | ||
monophyletic clade to | |||||
exclusion of |
|||||
but not NJ, analyses. | |||||
Schachtii | 18S | 0 | Inadequate | ||
Schachtii | 18S | 0 | Inadequate | ||
Schachtii | 18S | 2 | Weak | See above note. | |
Schachtii | 18S | 0 | Inadequate | ||
Schachtii | 18S | 2 | Weak | See above note. | |
Schachtii | ITS | 0 | Inadequate | ||
Schachtii | ITS | 0 | Inadequate | ||
Schachtii | ITS | 0 | Inadequate | ||
Schachtii | ITS | 2 | Inadequate | ||
Schachtii | ITS | 1 | Inadequate | ||
Schachtii | ITS | 0 | Inadequate | ||
Schachtii | ITS | 0 | Inadequate | ||
Schachtii | ITS | 1 | Inadequate | ||
Schachtii | ITS | 0 | Inadequate | ||
Schachtii | 28S | 1 | Inadequate | ||
Schachtii | 28S | 2 | Inadequate | ||
Schachtii | 28S | 1 | Inadequate | ||
Schachtii | 28S | 3 | Weak | ||
Schachtii | 28S | 1 | Inadequate | ||
Schachtii | 28S | 1 | Inadequate |
Marker |
|||||
---|---|---|---|---|---|
Species of Heterodera | 18S | ITS | 28S | coxI | All |
Species with at least one sequence | 18 | 55 | 36 | 38 | 13 |
Species with more than one sequence | 13 | 38 | 22 | 29 | 11 |
Total number of sequences recorded |
|||||
---|---|---|---|---|---|
Species | Country | 18S | ITS | 28S | coxI |
Italy | 1 | 3 | |||
Netherlands | 2 | ||||
United Kingdom | 3 | 1 | |||
Belgium | 1 | ||||
New Zealand | 1 | 1 | 3 | ||
United Kingdom | 1 | 2 | |||
Australia | 7 | 5 | |||
China | 11 | ||||
Algeria | 4 | 6 | |||
Australia | 1 | ||||
Azerbaijan | 9 | ||||
China | 4 | 359 | 57 | 4 | |
Czech Republic | 7 | 7 | 7 | ||
Egypt | 5 | 3 | |||
France | 9 | 7 | |||
Germany | 3 | 4 | |||
India | 4 | 1 | |||
Iran | 2 | 1 | 4 | ||
Iraq | 3 | ||||
Israel | 3 | 4 | |||
Morocco | 27 | 5 | |||
Norway | 4 | ||||
Pakistan | 1 | ||||
Saudi Arabia | 23 | 1 | 1 | ||
Serbia | 1 | 1 | |||
South Korea | 1 | 2 | 1 | ||
Spain | 3 | 3 | |||
Switzerland | 1 | ||||
Syria | 3 | 6 | |||
Tunisia | 1 | 6 | |||
Turkey | 39 | 26 | |||
United Kingdom | 1 | ||||
USA | 1 | 10 | 3 | 14 | |
Unknown | 4 | ||||
Belgium | 1 | ||||
Germany | 3 | ||||
Netherlands | 3 | 2 | 2 | ||
Unknown | 2 | ||||
Belgium | 2 | ||||
Sweden | 1 | 1 | |||
India | 12 | 13 | |||
Pakistan | 1 | 1 | |||
United Kingdom | 1 | ||||
Belgium | 1 | ||||
Algeria | 2 | ||||
Canada | 5 | 6 | 5 | ||
France | 1 | 2 | |||
Italy | 3 | 1 | 5 | ||
Mexico | 2 | 1 | |||
South Africa | 1 | 1 | 1 | ||
Switzerland | 1 | ||||
Syria | 3 | 1 | |||
Germany | 1 | ||||
Algeria | 5 | ||||
Iran | 1 | 1 | |||
Italy | 1 | 1 | |||
Netherlands | 1 | ||||
Russia | 1 | 1 | |||
Serbia | 1 | ||||
USA | 1 | 2 | |||
Spain | 1 | ||||
USA | 1 | 1 | |||
Germany | 3 | 2 | |||
Italy | 1 | 1 | 1 | ||
Netherlands | 1 | 1 | |||
Spain | 3 | 3 | 3 | 8 | |
China | 1 | 27 | 10 | ||
Iran | 2 | 1 | 1 | ||
Italy | 2 | 4 | 4 | 2 | |
Japan | 11 | 3 | |||
Canada | 2 | ||||
Georgia | 1 | 1 | |||
Greece | 4 | ||||
Iran | 1 | 3 | |||
Italy | 2 | 1 | |||
Qatar | 1 | ||||
USA | 2 | 1 | 1 | ||
Algeria | 2 | ||||
Azerbaijan | 20 | ||||
China | 58 | 7 | 2 | ||
Germany | 2 | 1 | |||
Greece | 1 | ||||
India | 1 | ||||
Iran | 5 | 19 | |||
Italy | 1 | ||||
Kazakhstan | 25 | ||||
Kyrgyzstan | 31 | ||||
Russia | 3 | 7 | |||
Serbia | 1 | 2 | |||
Slovakia | 1 | ||||
Spain | 1 | 2 | |||
Sweden | 1 | 1 | |||
Syria | 6 | ||||
Tajikistan | 1 | 3 | |||
Turkey | 80 | 20 | |||
Ukraine | 3 | ||||
United Kingdom | 1 | 3 | |||
USA | 3 | 1 | 5 | ||
Unknown | 2 | ||||
Canada | 1 | 12 | 1 | ||
Chile | 1 | ||||
China | 5 | 275 | 29 | ||
Iran | 2 | 1 | |||
Japan | 6 | 10 | |||
South Korea USA | 1 | 4 21 | 7 7 | 81 | |
Unknown | 1 | 1 | |||
China | 1 | 10 | 1 | 3 | |
Germany | 2 | 1 | |||
Iran | 1 | ||||
Ireland | 1 | ||||
Italy | 2 | ||||
Netherlands | 4 | ||||
USA | 1 | ||||
Egypt | 2 | ||||
Iran | 2 | ||||
Israel | 1 | ||||
India | 1 | ||||
USA | 1 | ||||
China | 3 | 3 | |||
Myanmar | 2 | ||||
Vietnam | 2 | 1 | |||
China | 1 | 1 | |||
Algeria | 2 | 21 | 2 | ||
Estonia | 1 | ||||
Germany | 1 | 2 | |||
Iran | 4 | 3 | |||
Israel | 3 | 2 | |||
Italy | 2 | ||||
Netherlands | 1 | 2 | |||
Slovakia | 1 | 2 | |||
Sweden | 1 | 1 | |||
Tunisia | 1 | ||||
United Kingdom | 1 | ||||
Belgium | 1 | ||||
Germany | 1 | 2 | |||
Iran | 3 | 1 | 8 | ||
Kyrgyzstan | 1 | 1 | |||
Portugal | 1 | ||||
Russia | 1 | 2 | |||
USA | 6 | 5 | |||
China | 1 | 2 | 2 | ||
Iran | 1 | 1 | |||
Japan | 20 | 41 | 41 | ||
South Korea | 3 | 3 | 3 | ||
USA | 2 | 3 | 1 | ||
Cyprus | 21 | ||||
Iran | 3 | 3 | |||
Israel | 2 | ||||
Jordan | 2 | 3 | |||
Kazakhstan | 28 | ||||
Morocco | 3 | ||||
Russia | 1 | 1 | |||
Syria | 9 | 1 | 7 | ||
Turkey | 87 | 3 | |||
New Zealand | 1 | 1 | 4 | ||
Germany | 4 | 1 | |||
United Kingdom | 1 | ||||
USA | 1 | 4 | |||
Unknown | 1 | ||||
Russia | 1 | ||||
USA | 13 | 1 | 14 | ||
Italy | 2 | 2 | |||
Spain | 2 | ||||
Tunisia | 1 | 2 | 2 | ||
China | 1 | 1 | 1 | ||
Azerbaijan | 1 | 1 | |||
Iran | 1 | 1 | |||
Guatemala | 2 | ||||
Russia | 1 | ||||
USA | 2 | 1 | |||
South Korea | 1 | 1 | 1 | ||
India | 1 | 1 | |||
Iran | 1 | ||||
Belgium | 1 | ||||
Germany | 8 | 8 | |||
Iran | 5 | ||||
Netherlands | 1 | 1 | |||
Russia | 1 | 2 | |||
South Korea | 2 | 1 | 2 | ||
USA | 1 | 1 | |||
Belgium Germany | 1 | 5 4 | |||
Greece | 1 | 2 | |||
Russia Serbia | 1 1 | 4 | |||
Slovakia | 2 | ||||
Sweden | 1 | ||||
United Kingdom | 2 | ||||
Ghana | 2 | ||||
Ivory Coast | 1 | ||||
Belgium | 1 | 1 | 3 | ||
Germany | 4 | ||||
Iran | 1 | 1 | |||
Russia | 5 | ||||
Ukraine | 3 | 4 | |||
Algeria | 1 | ||||
Australia | 4 | ||||
Belgium | 1 | 15 | |||
China | 1 | 1 | 8 | 3 | |
France | 1 | 3 | |||
Germany | 4 | ||||
Iran | 2 | 1 | |||
Ireland | 2 | ||||
Japan | 1 | 1 | 1 | ||
Mexico | 1 | 2 | |||
Morocco | 3 | ||||
Netherlands | 8 | 1 | 1 | ||
Poland | 1 | 1 | |||
Serbia | 3 | ||||
South Africa | 1 | ||||
South Korea | 3 | 4 | 7 | ||
Turkey | 12 | ||||
USA | 2 | 3 | 22 | ||
Unknown | 6 | 1 | |||
Germany | 1 | ||||
China | 1 | ||||
India | 1 | ||||
China | 1 | 1 | |||
Japan | 1 | 1 | |||
South Korea | 3 | 8 | 12 | ||
India | 1 | ||||
China | 7 | ||||
Costa Rica | 1 | 1 | 1 | ||
Estonia | 1 | ||||
Iran | 1 | 1 | 2 | ||
Italy | 1 | ||||
Japan | 8 | 8 | 8 | ||
South Korea | 8 | 8 | 9 | ||
United Kingdom | 1 | 2 | 1 | ||
USA | 2 | 5 | |||
Unknown | 4 | ||||
Iran | 1 | 1 | |||
Belgium | 1 | 1 | 3 | ||
Belgium | 1 | ||||
Germany | 1 | ||||
Slovakia | 1 | ||||
United Kingdom | 1 | ||||
USA | 1 | 2 | |||
Russia | 1 | 1 | |||
Afghanistan | 1 | ||||
China | 5 | ||||
Greece | 1 | 5 | 1 | ||
India | 4 | ||||
Portugal | 1 | ||||
USA | 2 | 1 |
Number of sequences recorded |
|||||
---|---|---|---|---|---|
ITS | 18S | 28S | Total | ||
Afghanistan | 1 | 1 | |||
Algeria | 62 | 7 | 8 | 77 | |
Australia | 11 | 1 | 6 | 18 | |
Azerbaijan | 36 | 1 | 37 | ||
Belgium | 21 | 1 | 2 | 14 | 38 |
Canada | 19 | 1 | 7 | 5 | 32 |
Chile | 1 | 1 | |||
China | 761 | 16 | 131 | 21 | 937 |
Costa Rica | 1 | 1 | 1 | 3 | |
Cyprus | 21 | 21 | |||
Czech Republic | 7 | 7 | 7 | 21 | |
Egypt | 7 | 3 | 10 | ||
Estonia | 2 | 2 | |||
France | 11 | 9 | 20 | ||
Georgia | 1 | 1 | 2 | ||
Germany | 35 | 1 | 28 | 64 | |
Ghana | 2 | 2 | |||
Greece | 6 | 1 | 1 | 7 | 15 |
Guatemala | 2 | 2 | |||
India | 26 | 15 | 1 | 42 | |
Iran | 41 | 16 | 51 | 108 | |
Iraq | 3 | 8 | 11 | ||
Ireland | 1 | 2 | 3 | ||
Israel | 7 | 7 | |||
Italy | 19 | 6 | 8 | 12 | 45 |
Ivory Coast | 1 | 1 | |||
Japan | 47 | 64 | 50 | 161 | |
Jordan | 2 | 3 | 5 | ||
Kazakhstan | 53 | 53 | |||
Kyrgyzstan | 32 | 1 | 33 | ||
Madagascar | 2 | 2 | |||
Mexico | 3 | 3 | 6 | ||
Morocco | 34 | 5 | 39 | ||
Myanmar | 2 | 2 | |||
Netherlands | 16 | 2 | 3 | 7 | 28 |
New Zealand | 2 | 2 | 7 | 11 | |
Norway | 4 | 4 | |||
Pakistan | 2 | 1 | 3 | ||
Poland | 1 | 2 | 3 | ||
Portugal | 1 | 1 | 2 | ||
Qatar | 1 | 1 | |||
Russia | 12 | 23 | 35 | ||
Saudi Arabia | 23 | 1 | 1 | 25 | |
Serbia | 7 | 3 | 10 | ||
Slovak Republic | 3 | 4 | 7 | ||
South Africa | 3 | 1 | 1 | 5 | |
South Korea | 30 | 38 | 36 | 104 | |
Spain | 10 | 3 | 3 | 13 | 29 |
Sweden | 4 | 2 | 2 | 8 | |
Switzerland | 3 | 3 | |||
Syria | 15 | 1 | 21 | 37 | |
Tajikistan | 1 | 3 | 4 | ||
Tunisia | 4 | 1 | 2 | 6 | 13 |
Turkey | 219 | 53 | 272 | ||
Ukraine | 3 | 1 | 7 | 11 | |
United Kingdom | 11 | 1 | 9 | 21 | |
USA | 71 | 7 | 18 | 158 | 254 |
Vietnam | 2 | 1 | 3 | ||
Unknown | 2 | 21 | 1 | 1 | 25 |
Total | 1724 | 77 | 346 | 592 | 2739 |
18S | ITS | 28S | cox1 | |||||
---|---|---|---|---|---|---|---|---|
Species | bp (%) | bp (%) | bp (%) | bp (%) | ||||
4 | 0–1; 0.50 (0–0.29; 0.15) | 6 | 0–2; 2 (0–0.48; 0.48) | |||||
3 | 0(0) | 5 | 0–1; 0 (0–0.24; 0) | |||||
18 | 0–9; 3 (0–0.93; 0.31) | 5 | 0(0) | |||||
17 | 0–11; 1 (0–1.09; 0.06) | 542 | 0–80; 8 (0–11.89; 0.89) | 76 | 0–5; 0 (0–0.67; 0) | 91 | 0–34; 9 (0–8.17; 2.40) | |
2 | 1 (0.06) | 7 | 0–12; 3 (0–1.29; 0.37) | 2 | 0(0) | 2 | 0(0) | |
3 | 2–10; 8 (0.20–1.02; 0.81) | |||||||
12 | 0–12; 4 (0–1.18; 0.39) | 13 | 0–11; 2 (0–1.46; 0.26) | |||||
13 | 0–13; 6 (0–1.35; 0.62) | 8 | 0–6; 3 (0–0.83; 0.41) | 17 | 0–20; 3 (0–4.77; 0.82) | |||
3 | 7–14; 11 (0.74–1.49; 1.18) | |||||||
11 | 0–10; 3 (0–1.21; 0.36) | 2 | 52 (9.49) | 3 | 1–16; 16 (0.24–4.01; 3.77) | |||
2 | 0(0) | |||||||
5 | 0–2; 1 (0–0.24; 0.11) | 3 | 0–2; 2 (0–0.51; 0.51) | |||||
3 | 0(0) | 3 | 0(0) | 3 | 0(0) | 8 | 0–1; 0 (0–0.28; 0) | |
3 | 3–4; 3 (0.25–0.36; 0.36) | 43 | 0–48; 11 (0–4.52; 1.05) | 18 | 0–4; 1 (0–0.54; 0.15) | 2 | 0(0) | |
2 | 2 (0.34) | 8 | 0–3; 1 (0–0.31; 0.10) | 9 | 0–2; 1 (0–0.47; 0.24) | |||
3 | 1–2; 1 (0.12–0.17; 0.17) | 256 | 0–43; 2 (0–4.46; 0.21) | 10 | 0–2; 1 (0–0.30; 0.13) | 75 | 0–44; 10 (0–10.58; 2.42) | |
6 | 0–1; 0 (0–0.16; 0) | 319 | 0–112; 3 (0–11.89; 0.32) | 56 | 0–43; 2 (0–5.79; 0.26) | 81 | 0–9; 0 (0–1.04; 0) | |
4 | 0–10; 5 (0–1.21; 0.59) | 15 | 0–81; 37 (0–11.34; 5.08) | 2 | 19 (2.92) | 3 | 0–17; 17 (0–4.84; 4.84) | |
5 | 0–6; 2 (0–0.59; 0.23) | |||||||
3 | 0–3; 3 (0–0.26; 0.26) | 7 | 1–6; 4 (0.15–0.91; 0.58) | |||||
2 | 5 (0.31) | 37 | 0–68; 7 (0–8.89; 0.84) | 2 | 9 (1.33) | 10 | 0–47; 14 (0–11.4; 3.37) | |
13 | 0–4; 1 (0–0.57; 0.17) | 19 | 0–9; 2 (0–5.92; 0.59) | |||||
3 | 1–22; 2 (0.17–1.27; 0.34) | 29 | 0–28; 7 (0–3.08; 0.73) | 48 | 0–21; 2 (0–2.88; 0.27) | 44 | 0–18; 5 (0–4.57; 1.27) | |
154 | 0–122; 13 (0–13.32; 1.46) | 1 (0.15) | 16 | 0–50; 27 (0–12.05; 6.52) | ||||
4 | 0(0) | |||||||
6 | 1–9; 3 (0.10–0.93; 0.31) | 6 | 0–1; 1 (0–0.27; 0.24) | |||||
14 | 0–9; 3 (0–0.95; 0.42) | 14 | 0–2; 0 (0–0.49; 0) | |||||
1 (0.17) | 6 | 1–9; 7 (0.11–0.95; 0.74) | 3 (0.38) | |||||
2 | 3 (0.30) | 2 | 2 (0.44) | |||||
5 | 6–18; 12 (0.66–1.94; 1.28) | |||||||
13 | 0–10; 6 (0–1.08; 0.62) | 20 | 0–8; 2 (0–1.93; 0.53) | |||||
5 | 0–4; 2 (0–0.46; 0.22) | 19 | 0–11; 1 (0–2.59; 0.24) | |||||
3 | 0–1; 1 (0–0.09; 0.09) | |||||||
5 | 0–20; 15 (0–2.10; 1.58) | 1 (0.15) | 16 | 0–18; 2 (0–4.57; 0.51) | ||||
9 | 1–9; 4 (0.06–0.99; 0.31) | 64 | 0–31; 12 (0–3.04; 1.29) | 20 | 0–4; 1 (0–0.58; 0.13) | 38 | 0–7; 1 (0–1.88; 0.12) | |
5 | 0–12; 4.5 (0–1.36; 1.03) | 10 | 0–8; 4 (0–1.06; 0.53) | 12 | 0–6; 1 (0–1.59; 0.24) | |||
7 | 0–3; 0 (0–0.72; 0) | |||||||
5 | 0–8; 3 (0–0.47; 0.29) | 23 | 0–14; 3 (0–1.48; 0.43) | 19 | 0–1; 0 (0–0.15; 0) | 26 | 0–5; 0 (0–1.24; 0) | |
5 | 1–8; 3.5 (0.10–0.88; 0.36) | 5 | 0–1; 1 (0–0.24; 0.24) | |||||
16 | 0–39; 14 (0–5.65; 2.19) | 4 | 0–2; 1 (0–0.31; 0.15) |