Genetic variation of the major histocompatibilty complex-B haplotypes in Nigerian local chicken populations

Adeleke M. A., Peters S. O., Ozoje M. O., Ikeobi C. O. N., Adebambo A. O., Olowofeso O., Bamgbose A. M., Adebambo O. A. (2011): A preliminary screening of genetic lineage of Nigerian local chickens based on blood protein polymorphisms. Animal Genetic Resources 48: 23–28.10.1017/S2078633610000962Search in Google Scholar

Adebambo A. O., Mobegi V. A., Mwacharo J. M., Oladejo B. M., Adewale R. A., Ilori L. O., Makanjuola B. O., Afolayan O., Bjørnstad G., Jianlin H., Hanotte O. (2010): Lack of phylogeographic structure in Nigerian village chicken revealed by mitochondria D-loop sequence analysis. International Journal of Poultry Science 9: 503–507.10.3923/ijps.2010.503.507Search in Google Scholar

Botstein D., White R. L, Skolnick M., Davis R. W. (1980): Construction of genetic linkage map in man using restriction fragment length polymorphisms. American Journal of Human Genetics 32: 314–331.Search in Google Scholar

Briles W. E., Briles R. W. (1982): Identification of haplotypes of the chicken major histocompatibility complex (B). Immunogenetics 15: 449–459.10.1007/BF003459047106863Search in Google Scholar

Briles W. E., Bumstead N., Ewert D. L., Gilmour D. G., Gogusev J., Hala K., Koch C., Longenecker B. M., Nordskog A. W., Pink J. R., Schierman L. W., Simonsen M., Toivanen A., Toivanen P., Vainio O., Wick G. (1982): Nomenclature for chicken major histocompatibility (B) complex. Immunogenetics 15: 441–447.10.1007/BF003459037106862Search in Google Scholar

Chatterjee R., Sharma R. P., Mishra A., Dange M., Bhattacharya T. K. (2008): Association of Microsatellite with Growth and Immunocompetence Traits in Crossbred Layer Chicken. Journal of Poultry Science 45: 186–191.10.2141/jpsa.45.186Search in Google Scholar

Chazara O., Chang C-S., Bruneau N., Benabdeljelil K., Fotsa J-C., Kayang B. B., Loukou N. E., Osei-Amponsah R., Yapi-Gnaore V., Youssao I. A. K., Chen C-F., Pinard-van der Laan M-H., Tixier-Boichard M., Bed’Hom B.(2013): Diversity and Evolution of the Highly Polymorphic Tandem Repeat LEI0258 in the Chicken MHC-B Region. Immunogenetics 65: 447–459.10.1007/s00251-013-0697-623529664Search in Google Scholar

Desjardins P., Conklin D. (2010): NanoDrop microvolume quantitation of nucleic acids. Journal of Visualized Experiments 22 (45), doi:10.3791/256510.3791/2565334630821189466Search in Google Scholar

Fulton J. E. (2020): Advances in methodologies for detecting MHC-B variability in chickens. Poultry Science 99: 1267–1274.10.1016/j.psj.2019.11.029758789532111304Search in Google Scholar

Fulton J. E., McCarron A. M., Lund A. R., Pinegar K. N., Wolc A., Chazara O., Bed’Hom B., Berres M., Miller M. M. (2016): A high-density SNP panel reveals extensive diversity, frequent recombination and multiple recombination hotspots within the chicken major histocompatibility complex B region between BG2 and CD1A1. Genetics Selection and Evolution 48: 1. https://doi.org/10.1186/s12711-015-0181-x10.1186/s12711-015-0181-x470559726743767Search in Google Scholar

Fulton J. E., Young E. E., Bacon L. D. (1995): Chicken MHC alloantiserum cross-reactivity analysis by hemagglutination and flow cytometry. Immunogenetics 43: 277–288.10.1007/s002510050064Search in Google Scholar

Fulton J. E., Juul-Madsen H. R., Ashwell C. M., McCarron A. M., Arthur J. A., O’Sullivan N. P., Taylor R. L. Jr. (2006): Molecular genotype identification of the Gallus gallus major histocompatibility complex. Immunogenetics 58: 407–421.10.1007/s00251-006-0119-016738938Search in Google Scholar

Goudet J. (2002): FSTAT, a program for Windows (95 and above) to estimate and test gene diversity and fixation indexes (Version 2.9.3). Available at http://www.unil.ch/izea/softwares/fstat.html.Search in Google Scholar

Hako Touko B. A., Keambou C. T., Han J.-M., Bembidé C., Skilton R. A., Ogugo M., Manjeli Y., Osama S., Cho C.-Y., Djikeng A. (2015): Molecular typing of the major histocompatibility complex B microsatellite haplotypes in Cameroon chicken. Animal Genetic Resources 56: 47–54.10.1017/S2078633614000538Search in Google Scholar

Han B., Lian L., Qu L., Zheng J., Yang N. (2013): Abundant polymorphisms at the microsatellite locus LEI0258 in local chickens. Poultry Science 92: 3113–3119.10.3382/ps.2013-0341624235219Search in Google Scholar

Ilori B. M., Wheto M., Durosaro S. O., Akano K., Adebambo A. O., Adebambo O. A. (2016): Polymorphism of IGF-1 promoter and the UTR regions in Nigerian locally adapted chickens. Biology Agriculture and Healthcare 6: 143–150.Search in Google Scholar

Ilori B. M., Oyeniyi Dada Q. A., Ayankeye T. R., Hamzat F., Durosaro S. O., Wheto M., Adebambo A. O., Adebambo O. A. (2017): Effect of crossbreeding and selection for meat on Nigerian local chickens. Bulletin of Animal Health and Production in Africa 65: 277–287.Search in Google Scholar

Izadi F., Ritland C., Cheng K. M. (2011): Genetic diversity of the major histocompatibility complex region in commercial and noncommercial chicken flocks using the LEI0258 microsatellite marker. Poultry Science 90: 2711–2717.10.3382/ps.2011-0172122080008Search in Google Scholar

Kaufman J., Völk H., Wallny H. J. (1995): A “minimal essential Mhc” and an “unrecognized Mhc”: two extremes in selection for polymorphism. Immunological Review 143: 63–88.10.1111/j.1600-065X.1995.tb00670.x7558083Search in Google Scholar

Kuhnlein U., Liu N., Weigend S., Gavora J. S., Fairfull W., Zadworny D. (1997): DNA polymorphisms in the chicken growth hormone gene: response to selection for disease resistance and association with egg production. Animal Genetics 28: 116–123.10.1111/j.1365-2052.1997.00076.x9172309Search in Google Scholar

Kroemer G., Guillemot F., Auffray C. (1990): Genetic organization of the chicken MHC. Immunology Research 9: 8–19.10.1007/BF029184752406354Search in Google Scholar

Lazar I. (2010): GelAnalyzer 2010: version 2010a freeware. Available at www.gelaalyzer.comSearch in Google Scholar

Manjula P., Fulton J. E., Seo D., Lee J. H. (2020): Major histocompatibility complex B variability in Korean native chicken breeds. Poultry Science 99: 4704–4713. Available online 25 June 2020. https://doi.org/10.1016/j.psj.2020.05.049. Accessed 03 September 202010.1016/j.psj.2020.05.049759813132988505Search in Google Scholar

McConnell S. K., Dawson D. A., Wardle A., Burke T. (1999): The isolation and mapping of 19 tetranucleotide microsatellite markers in the chicken. Animal Genetics 30: 183–189.10.1046/j.1365-2052.1999.00454.x10442979Search in Google Scholar

Miller M. M., Bacon L. D., Hala K., Hunt H. D., Ewald S. J., Kaufman J., Zoorob R., Briles W. E. (2004): 2004 nomenclature for the chicken major histocompatibility (B and Y) complex. Immunogenetics 56: 261–279.10.1007/s00251-004-0682-115257423Search in Google Scholar

Miller M. M., TaylorJr. R. L. (2016): Brief review of the chicken Major Histocompatibility Complex: the genes, their distribution on chromosome 16, and their contributions to disease resistance. Poultry Science 95: 375–392.10.3382/ps/pev379498853826740135Search in Google Scholar

Ncube K. T., Jooste P. J., Soma P., Dzomba E. F., Muchadeyi F. C. (2014): Polymorphism of the major histocompatibility complex and genetic structure of southern African village chicken populations. International Journal of Poultry Science 13: 357–363.10.3923/ijps.2014.357.363Search in Google Scholar

Nei M. (1972): Genetic Distance between Populations. The American Naturalist 106: 283–292.10.1086/282771Search in Google Scholar

Ngeno K., van der Waaij E. H., Megens H. J., Kahi A. K., van Arendonk J. A. M., Crooijmans R. P. M. A. (2014): Genetic diversity of different local chicken ecotypes using highly polymorphic MHC-linked and non-MHC microsatellite markers. Animal Genetic Resources 56: 1–7. Available on CJO2014. doi:10.1017/S2078633614000484.10.1017/S2078633614000484Search in Google Scholar

Ohwojakpor O., Olowofeso O., Adebambo O. A., Onagbesan O. M. (2012): Genetic diversity of chicken populations in South-South region of Nigeria using microsatellite markers. Egyptian Poultry Science 32: 263–271.Search in Google Scholar

Olowofeso O., Wheto M., Durosaro S. O., Bankole K. O., Adepoju D. A., Folarin O. V. (2016): Combined exclusion probabilities of ten microsatellite markers used with Nigerian chicken populations. European International Journal of Science and Technology 5: 21–32.Search in Google Scholar

Park S. D. E. (2001): The Excel Microsatellite Toolkit: excel tools for diploid or haploid microsatellite data. Available at http://animalgenomics.ucd.eiSearch in Google Scholar

Peakall R., Smouse P. E. (2012): GenAlEx 6.5: Genetic Analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics 28: 2537–2539.10.1093/bioinformatics/bts460346324522820204Search in Google Scholar

Rogers S. L., Kaufman J. (2008): High allelic polymorphism, moderate sequence diversity and diversifying selection for B-NK but not Blec, the pair of lectin-like receptor genes in the chicken MHC. Immunogenetics 60: 461–475.10.1007/s00251-008-0307-118574582Search in Google Scholar

Takezaki N., Nei M., Tamura K. (2014): POPTREEW: Web version of POPTREE for constructing population trees from allele frequency data and computing other population statistics. Molecular Biology and Evolution 31: 1622–1624.10.1093/molbev/msu09324603277Search in Google Scholar

Weir B. S, Cockerham C. C. (1984): Estimating F-statistics for the analysis of population structure. Evolution 38: 1358–1370.10.1111/j.1558-5646.1984.tb05657.xSearch in Google Scholar