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Evaluation of GenDx Protocol for HLA NGS Genotyping Using the Ion Torrent Sequencing Platform

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Shiina T, Hosomichi K, Inoko H, Kulski JK. The HLA genomic loci map: Expression, interaction, diversity and disease. J Hum Genet, 2009, 54 (1), 15-39. Search in Google Scholar

Janse van Rensburg WJ, de Kock A, Bester C, Kloppers JF. HLA and disease: Missing clinical data on laboratory request forms – a missed opportunity. South African Med J, 2021, 111 (1), 4. Search in Google Scholar

Kennedy AE, Ozbek U, Dorak MT. What has GWAS done for HLA and disease associations? Int J Immunogenet, 2017, 44 (5), 195-211. Search in Google Scholar

Edgerly CH, Weimer ET. The past, present, and future of HLA typing in transplantation. Methods Mol Biol, 2018, 1802, 1-10. Search in Google Scholar

Mahdi BM. A glow of HLA typing in organ transplantation. Clin Transl Med, 2013, 2 (6), 1-5. Search in Google Scholar

Bravo-Egana V, Sanders H, Chitnis N. New challenges, new opportunities: Next generation sequencing and its place in the advancement of HLA typing. Hum Immunol, 2021, 82 (7), 478-87.Search in Google Scholar

Lind C, Ferriola D, Mackiewicz K, et al. Next-generation sequencing: The solution for high-resolution, unambiguous human leukocyte antigen typing. Hum Immunol, 2010, 71 (10), 1033-42.Search in Google Scholar

Duke JL, Lind C, Mackiewicz K, et al. Determining performance characteristics of an NGS-based HLA typing method for clinical applications. HLA, 2016, 87 (3), 141-52.Search in Google Scholar

De Santis D, Dinauer D, Duke J, et al. 16th IHIW: Review of HLA typing by NGS. Int J Immunogenet, 2013, 40 (1), 72-6. Search in Google Scholar

Osoegawa K, Montero-Martín G, Mallempati KC, et al. Challenges for the standardized reporting of NGS HLA genotyping: Surveying gaps between clinical and research laboratories. Hum Immunol, 2021, 82 (11), 820-8.Search in Google Scholar

Excoffier L. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Res, 2010, 10, 564-567. Search in Google Scholar

RStudio Team. RStudio: Integrated Development Environment for R. RStudio, PBC, Boston, MA, 2021, http://www.rstudio.com/. Search in Google Scholar

Klasberg S, Surendranath V, Lange V, Schöfl G. Bioinformatics Strategies, Challenges, and Opportunities for Next Generation Sequencing-Based HLA Genotyping. Transfus Med Hemotherapy, 2019, 46 (5), 312-24. Search in Google Scholar

Brown NK, Merkens H, Rozemuller EH, et al. Reduced PCR-generated errors from a hybrid capture-based NGS assay for HLA typing. Hum Immunol, 2021, 82 (4), 296-301.Search in Google Scholar

Naumova Е, Ivanova М. Main tissue compatibility complex – facts, hypotheses, application in medicine. Sofia, Litse, 2006, 13-26.Search in Google Scholar

Zlatev A, Ivanova M, Michailova S, et al. Bulgarian bone marrow donors registry – Past and future directions. Cell Tissue Bank, 2008, 9 (4), 347-51. Search in Google Scholar

Ivanova M, Rozemuller E, Tyufekchiev N, et al. HLA polymorphism in Bulgarians defined by high-resolution typing methods in comparison with other populations. Tissue Antigens, 2002, 60 (6), 496-504. Search in Google Scholar

Gonzalez-Galarza FF, McCabe A, Santos EJM, et al. (2020) Allele frequency net database (AFND) 2020 update: Gold-standard data classification, open access genotype data and new query tools. Nucleic Acids Res, 48 (D1), 783-8.Search in Google Scholar

eISSN:
2719-5384
Lingua:
Inglese
Frequenza di pubblicazione:
4 volte all'anno
Argomenti della rivista:
Medicine, Basic Medical Science, Immunology, Clinical Medicine, other